CmaCh02G009400 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G009400
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Erythronate-4-phosphate dehydrogenase family protein
Location	Cma_Chr02: 5577209 .. 5577997 (-)
RNA-Seq Expression	CmaCh02G009400
Synteny	CmaCh02G009400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCAGGTCGACGGATTACCGGTGCCGCCTCGGCGGTGATCGCCTCAAGATCAAGGCATTCTTCGTTCGGTTTTCGCATCTTGAATCCCTGAATCCACTGCCGGACTCGCTCACTCTTTTCTACCTTCCTCGCATTGACGAGACCGACCTGGAGATCGACGGCCTTAAGATTCGTCCGGACTCGCCGGCGTTTGTGACTCTTCATCGAGTCGTCTCACCGTCGTTGCGGATGAGGAAGGATGTGGTGTTCGGGAGTAGAGAGCGAGTTCGAGCAAGCGAAGGTGTGCAGTTCCAGGTGTATTTGAGGGAGGAGAAGGTCGTGCAGGGGATTTTCAGGAGGTGCGACGATGGAGAGTGGAGATTAGAGTGTAAATGCGCGCTTGAATCTGACATCGCCAGATCAGCGGCAGCGGCAGCGGCGGTGGAGATTTGTGTGGATTTGGAGGGAGAGGTAGCGATGTTTGAGAAGGTGGTGCTGAAAGTGAGAAGGAAGAAGAAGAGAGGTTTCTGTGCAATGGAGGAGATTCCGGAGAGGCGAGAAGTGGACGGTGATTGCGATGGATGTGGTTGTTGTTGTGAGGTGGATGGAGATTCGTCGGTCGGCGATTGCGGTAGTAGTGGTGGTGATGATGATGATGATGATGACGACGACGACGGCGGAGAAACGGAGGTAGAGGGGGCGTGGTGGGGCATGGATTTGGGGATTTGGGCCGTGTGTTTAGGAGTTGGGTTCTTGGTCTCTAAGGCGGCCCACTCCAAAACATTGAGGCGCAAGGGAATATTCTGA

mRNA sequence

ATGTGCAGGTCGACGGATTACCGGTGCCGCCTCGGCGGTGATCGCCTCAAGATCAAGGCATTCTTCGTTCGGTTTTCGCATCTTGAATCCCTGAATCCACTGCCGGACTCGCTCACTCTTTTCTACCTTCCTCGCATTGACGAGACCGACCTGGAGATCGACGGCCTTAAGATTCGTCCGGACTCGCCGGCGTTTGTGACTCTTCATCGAGTCGTCTCACCGTCGTTGCGGATGAGGAAGGATGTGGTGTTCGGGAGTAGAGAGCGAGTTCGAGCAAGCGAAGGTGTGCAGTTCCAGGTGTATTTGAGGGAGGAGAAGGTCGTGCAGGGGATTTTCAGGAGGTGCGACGATGGAGAGTGGAGATTAGAGTGTAAATGCGCGCTTGAATCTGACATCGCCAGATCAGCGGCAGCGGCAGCGGCGGTGGAGATTTGTGTGGATTTGGAGGGAGAGGTAGCGATGTTTGAGAAGGTGGTGCTGAAAGTGAGAAGGAAGAAGAAGAGAGGTTTCTGTGCAATGGAGGAGATTCCGGAGAGGCGAGAAGTGGACGGTGATTGCGATGGATGTGGTTGTTGTTGTGAGGTGGATGGAGATTCGTCGGTCGGCGATTGCGGTAGTAGTGGTGGTGATGATGATGATGATGATGACGACGACGACGGCGGAGAAACGGAGGTAGAGGGGGCGTGGTGGGGCATGGATTTGGGGATTTGGGCCGTGTGTTTAGGAGTTGGGTTCTTGGTCTCTAAGGCGGCCCACTCCAAAACATTGAGGCGCAAGGGAATATTCTGA

Coding sequence (CDS)

ATGTGCAGGTCGACGGATTACCGGTGCCGCCTCGGCGGTGATCGCCTCAAGATCAAGGCATTCTTCGTTCGGTTTTCGCATCTTGAATCCCTGAATCCACTGCCGGACTCGCTCACTCTTTTCTACCTTCCTCGCATTGACGAGACCGACCTGGAGATCGACGGCCTTAAGATTCGTCCGGACTCGCCGGCGTTTGTGACTCTTCATCGAGTCGTCTCACCGTCGTTGCGGATGAGGAAGGATGTGGTGTTCGGGAGTAGAGAGCGAGTTCGAGCAAGCGAAGGTGTGCAGTTCCAGGTGTATTTGAGGGAGGAGAAGGTCGTGCAGGGGATTTTCAGGAGGTGCGACGATGGAGAGTGGAGATTAGAGTGTAAATGCGCGCTTGAATCTGACATCGCCAGATCAGCGGCAGCGGCAGCGGCGGTGGAGATTTGTGTGGATTTGGAGGGAGAGGTAGCGATGTTTGAGAAGGTGGTGCTGAAAGTGAGAAGGAAGAAGAAGAGAGGTTTCTGTGCAATGGAGGAGATTCCGGAGAGGCGAGAAGTGGACGGTGATTGCGATGGATGTGGTTGTTGTTGTGAGGTGGATGGAGATTCGTCGGTCGGCGATTGCGGTAGTAGTGGTGGTGATGATGATGATGATGATGACGACGACGACGGCGGAGAAACGGAGGTAGAGGGGGCGTGGTGGGGCATGGATTTGGGGATTTGGGCCGTGTGTTTAGGAGTTGGGTTCTTGGTCTCTAAGGCGGCCCACTCCAAAACATTGAGGCGCAAGGGAATATTCTGA

Protein sequence

MCRSTDYRCRLGGDRLKIKAFFVRFSHLESLNPLPDSLTLFYLPRIDETDLEIDGLKIRPDSPAFVTLHRVVSPSLRMRKDVVFGSRERVRASEGVQFQVYLREEKVVQGIFRRCDDGEWRLECKCALESDIARSAAAAAAVEICVDLEGEVAMFEKVVLKVRRKKKRGFCAMEEIPERREVDGDCDGCGCCCEVDGDSSVGDCGSSGGDDDDDDDDDDGGETEVEGAWWGMDLGIWAVCLGVGFLVSKAAHSKTLRRKGIF

Homology

[Close]

BLAST of CmaCh02G009400 vs. TAIR 10
Match: AT4G24110.1 (unknown protein; Has 76 Blast hits to 76 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 204.5 bits (519), Expect = 1.0e-52
Identity = 124/257 (48.25%), Postives = 164/257 (63.81%), Query Frame = 0


Query: 1   MCRSTDYRCRLGGDRLKIKAFFVRFSHLESLNPLPDSLTLFYLPRIDETDLEIDGLKIRP 60
           MCRS D+   +  + LK+KAFFVRF+ L +   LPDSLTL Y PRI+E   E+DG KIRP
Sbjct: 1   MCRSPDFERYVEKESLKVKAFFVRFTGLPTRGFLPDSLTLLYPPRINEAAFELDGSKIRP 60

Query: 61  DSPAFVTLHRVVSPSLRMRKDVVFGSRERVRASEGVQFQVYLREEKVVQGIFRRCDDGEW 120
           DSPAFVTLHRVV        DV++GSRERVR  EG++F+VY+ EE+V++GIFR+ +  +W
Sbjct: 61  DSPAFVTLHRVVKGG-----DVIYGSRERVRVWEGIRFEVYMSEERVIKGIFRKDEGDKW 120

Query: 121 RLECKCALESDIARSAAAAAAVEICVDLEGEVAMFEKV-VLKVRRKKKRGFCAMEEIPER 180
           +LEC+C +E +         A E+ V  EG VA        + RRK+K GF  +EEIPE 
Sbjct: 121 KLECECEMEEE--------GAAEVVVAAEGHVATATMARKHRRRRKQKIGFECLEEIPEE 180

Query: 181 REVDGDCDGCGCCCEVDGDSSVGDCGSSGGDDDDDDDDDDGGETEVEGAWWGMDLGIWAV 240
           RE   D DG  C C   G+S  G+       + ++ +     E+E EG  W +DLGIW +
Sbjct: 181 REEGRDSDGGVCFCTCSGESDDGE------GEWEEVEWTAEMESETEGMGWAVDLGIWVM 237

Query: 241 CLGVGFLVSKAAHSKTL 257
           CLGVG+LVSKA+ +KTL
Sbjct: 241 CLGVGYLVSKAS-TKTL 237

[Close]

BLAST of CmaCh02G009400 vs. TAIR 10
Match: AT1G75180.1 (Erythronate-4-phosphate dehydrogenase family protein )

HSP 1 Score: 43.5 bits (101), Expect = 3.0e-04
Identity = 31/105 (29.52%), Postives = 54/105 (51.43%), Query Frame = 0


Query: 11  LGGDRLKIKAFFVRFSHLESLNPLPDSLTLFYLPRIDETDLEIDGLKIRPDSPAFVTLHR 70
           L    L ++ F+VR S+ +  +  P+ LT+ ++P   ++ LEI+G+++   S        
Sbjct: 33  LSSPLLDLRVFYVRISNFKVDHSTPEVLTITHIPLDPDSLLEINGVRMSMYSEG------ 92

Query: 71  VVSPSLRMRKD-----VVFGSRERVRASEGVQFQVYLREEKVVQG 111
           V S   R R D       F S + +R S  V+F+VY ++E V+ G
Sbjct: 93  VSSQLRRDRVDKKSEVATFISTDNIRLSGSVKFEVYDKDELVLSG 131

[Close]

BLAST of CmaCh02G009400 vs. TAIR 10
Match: AT1G75180.2 (Erythronate-4-phosphate dehydrogenase family protein )

HSP 1 Score: 43.5 bits (101), Expect = 3.0e-04
Identity = 31/105 (29.52%), Postives = 54/105 (51.43%), Query Frame = 0


Query: 11  LGGDRLKIKAFFVRFSHLESLNPLPDSLTLFYLPRIDETDLEIDGLKIRPDSPAFVTLHR 70
           L    L ++ F+VR S+ +  +  P+ LT+ ++P   ++ LEI+G+++   S        
Sbjct: 33  LSSPLLDLRVFYVRISNFKVDHSTPEVLTITHIPLDPDSLLEINGVRMSMYSEG------ 92

Query: 71  VVSPSLRMRKD-----VVFGSRERVRASEGVQFQVYLREEKVVQG 111
           V S   R R D       F S + +R S  V+F+VY ++E V+ G
Sbjct: 93  VSSQLRRDRVDKKSEVATFISTDNIRLSGSVKFEVYDKDELVLSG 131

[Close]

BLAST of CmaCh02G009400 vs. TAIR 10
Match: AT1G75180.3 (Erythronate-4-phosphate dehydrogenase family protein )

HSP 1 Score: 43.5 bits (101), Expect = 3.0e-04
Identity = 31/105 (29.52%), Postives = 54/105 (51.43%), Query Frame = 0


Query: 11  LGGDRLKIKAFFVRFSHLESLNPLPDSLTLFYLPRIDETDLEIDGLKIRPDSPAFVTLHR 70
           L    L ++ F+VR S+ +  +  P+ LT+ ++P   ++ LEI+G+++   S        
Sbjct: 33  LSSPLLDLRVFYVRISNFKVDHSTPEVLTITHIPLDPDSLLEINGVRMSMYSEG------ 92

Query: 71  VVSPSLRMRKD-----VVFGSRERVRASEGVQFQVYLREEKVVQG 111
           V S   R R D       F S + +R S  V+F+VY ++E V+ G
Sbjct: 93  VSSQLRRDRVDKKSEVATFISTDNIRLSGSVKFEVYDKDELVLSG 131

The following BLAST results are available for this feature:

BLAST of CmaCh02G009400 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G009400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24110.1	1.0e-52	48.25	unknown protein; Has 76 Blast hits to 76 proteins in 13 species: Archae - 0; Bac...	[more]
AT1G75180.1	3.0e-04	29.52	Erythronate-4-phosphate dehydrogenase family protein	[more]
AT1G75180.2	3.0e-04	29.52	Erythronate-4-phosphate dehydrogenase family protein	[more]
AT1G75180.3	3.0e-04	29.52	Erythronate-4-phosphate dehydrogenase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..224
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..224
None	No IPR available	PANTHER	PTHR37244	NADP-SPECIFIC GLUTAMATE DEHYDROGENASE	coord: 1..260

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G009400.1	CmaCh02G009400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane