CmaCh02G009050 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G009050
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ruBisCO large subunit-binding protein subunit alpha
Location	Cma_Chr02: 5389012 .. 5393123 (+)
RNA-Seq Expression	CmaCh02G009050
Synteny	CmaCh02G009050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGCGCACAGTACGGAATATTTCTTGTCAAAATCACATTTGGGCCGTATCGTAACAAAACTAATCCTGGAATAGCCTCAACGGTTCTGGAAGAAGAAGAATCTTCTGGAACGTCCAACCCAACAATAAAATCAAACCCTAAATTCATTCATTACGTTCATCCTTTTGCTTACACACCTTATCCCAAAACCCAGCGAGCTCTACCGGAACAAAAACCTCCGAGCTTTGCTACCGGAAAATGGCGTCTGCGAATGCAATTTCTTCCGCATCCATTCTTTGTTCTTCCCAGAAGGTACTGCTTCCACTGCTTTTCTCATTTCTTCCTCGGACTCTGGACTCTAGAGCAATAGCTCTCATTACTCCGTATTCTAAATAGTTCGTAGCTTTCGTTCATTTTTCTACGTAACTGGCATTCTAGCTAGAAATTTTGTGTAATTAGCTATGATAGATGAGCTGGGGGGGGGGGGGGGGGGGNGGGTTCTTTAATCTTTTAAAATGTGGGGAGTGGGAGGGCTGTGCTATTTCCGGTGGCTTACGCTGCATTTGTCTAATGTTGCAGAGCTTGAGGAAAGTGAATCAACCGCAGAGTAACAGGGTGAATTACAGACAAGCGGGTAGCAGATTTGTTGTGAGAGCTACTGCAAAGGATATAGCGTTCGACCAGAGTTCAAGGACTGCACTTCAGTCTGGGATTGATAAGCTTGCCAATGCAGTCGGTCTGACTCTTGGACCCAGGGGTAACTTTCTGGTTCTTTTGATTTATGAATTAGTTAGCATTGAATTTCGTTTCTGTGCTCCTCGTTATCCCGCCTTGCGTAGATATGTCTGCTGTTGAAATCTATACAAGACACTGCTCAATTTGGTTCTTAACATAATGAAAAACTTGCGACCTTTGTATTTGAAGGGAGGAATGTTGTGCTGGATGAGTTCGGCAGTCCCAAAGTAGTAAATGATGGTGTGACAATTGCTCGTGCAATTGAGTTGCCTGATCCCATGGAGAATGCTGGGGCAGCTCTAATTAGGGAGGTTGGTCTTTTGTACTCTGGACCTTTTTATATACCAGTGCGATATATATTTGATCTGTTATGATGCAAAAGCTTCTCATCTATCGGCCATTGAACATTAACAAGCATTCTATCTGTCATGAAGGTCGCAAGTAAAACTAATGACTCTGCTGGTGATGGGACAACGACTGCCTCAGTCCTGGCGAGGGAAATTATCAAACTAGGCCTTCTGAATGTTACTTCCGGTGCAAATCCAGTATCACTGAAGAGAGGAATTGACAAGACAGTGCAAGGATTGATTGAAGAGCTTGAGAAGAAGGCTAGGGCTATCGAAGGCAGAGATGATATCAAAGGTATTGCTTTCCATATCCTGAATGGCCTTAGTTTGGAACTTCTTCTTATTTCTGGTCATTATTATTTTTTTTCACTAACTGATGATCTGCGTTTTGTTTTAATTCTGTGTAGCCGTTGCCTCTATCTCTGCTGGAAATGATGAGCTGATAGGGTCGATGATCGCTGATGCCATTGAAAAAGTGGGGCCCGACGGTGTCTTGTCCATTGAGTCATCATCTTCCTTTGAGACCACTGTGGAAGTTGAAGAAGGGATGGCGGTGTGTAGTTTTTTCTGTTTAGTAAATTATATTTCATGATCCAATTTCTAGTCATATACATGTTTTAACTCTATTTTGTCTTCATTTTGTTTTTTGCTTTGCAGATTGATAGAGGCTACATTTCTCCTCAGTTTGTCACAAACCCTGAAAAGTTAATTGCTGAATTTGAGAATGCACGAGTGTTAATTACAGATCAGAAAATTTCAGCAATAAAGGATATAATCCCTATATTGGAGAAAACCACGCAATTGAGAGCTCCTTTGCTCATTATTGCTGAGGATATTACTGGTGAGGCTTTGGCTACACTTGTTGTGAACAAGTTGCGGGGTATTCTAAATGTTGCTGCCATTAAAGCTCCAGGATTTGGGGAAAGGAGAAAGGCTATGCTCCAAGACATTGCCATTTTGACAGGTAATCTCAAGTCTTAAAGTTATAATGGGCAACTACATGCTTCATCTGTTTAAATGCTAACACATTTGAGATCTCTTGTTGGATTTACTTGTTCTGTTGATGGCATAATTGTTTCTTTATTCTCTGTATCCGTGAATTCACTATCTCAACCAAGCATGTGAAGTTGCATTGTTTAAATCAAAAGTTCATATAAGGGGAAGTTATTTTTATAAATCTTAAGTGCTTTCATGTCGAATGAAAGAATGACCAACGTTGTTTTCCTTGTTACTTTATTATTTCAGGTGCTGAATTTCAAGCCAGTGATCTTGGATTGCTTGTAGAAAATACTACAATTGAACAGCTTGGTTTGGCCCGAAAAGTGACCATCTCGAAGGACACTACCACCATCATTGCTGACGCTGCTTCAAAAGATGAGCTACAAGCAAGGATTGCACAGCTAAAGAAGGAATTGGGTGAGACGGATTCTGTTTATGACACTGAGAAACTGGCTGAAAGAATTGCCAAATTGTCTGGTGGTGTTGCCGTCATTAAGGTTGGAGCTGCGACAGAGACTGAACTTGAGGACCGGAAGCTCCGTATTGAGGATGCAAAGAATGCAACTTTTGCTGCCATAGAGGAAGGGATTGTACCTGGTGGTGGTACTGCACTGGTTCACCTCTCAACTCTTGTCCCTGCAATCAAGGACAAGCTTGAGGATGCGGAAGAGAAGCTAGGTGCTGATATTATCCAAAAGGTATTAGAATTTGAGGCTTCTATTTAATAATCATTTGGCTTTTAAAAACTAACCTTATAAACACTATTTAAACCTACTTGTTTCTTTGTTTTGTCTCTGTGATCTGATGAAGAACACGATATAGTAATTGGGAGTTGATCATAATTTTTATAAACAGAAAATTAAAAACCCTAAAATTGCTAGTTGTGTCCAGAAGATCATCCCAACCAGTGGTGTTGGTTATTTGGCGTGAGATTACTTAGTCAACTCCTTTAAAACTTTCATTGTAATCCTATCGAAGCATACCACTTGTTCTTAAGAAATTCCTGGAACACCTGGCGTTTGGTATTTTGTTGTAAACTAGTCTTTCTTGTACGCAGGCGCTGGTAGCACCGGCATCCTTAATTGCCCAAAACGCTGGAATTGAAGGGGAAGTAGTGGTGGAGAAGATCAAGTCGAGTGAATGGGAAATTGGATATAACGCAATGACAGACAAGTACGAGAATCTGGTAGAGGCCGGTGTGATTGACCCAGCCAAGGTGACAAGATGTGCATTGCAGAATGCGGCTTCAGTTGCTGGCATGGTCCTAACCACACAGGCCATTGTAGTTGAAAAGCCCAAGCCCAAGGCACCCATCGCTGCACCACAAGGCCTTACCGTTTAAAATTCCTGGGAATCTTGATCATCTTCATTTGTAGGACAGACGTCAGATATGAAGAGTAGCTTCTTGCGGCGCGTGTTCATTGGAAACGGCGAGACAATAAGAAAAGATGGAACTCTGTATGTGAATGCGCTTTTTTTGAACGGTTCTGGAAACTTGCATTAGATATTGTAAGATCACGGAAATCAATTGCATCAAGTTTGTGTTTTTTTCATGGGAAAGAAATAATTTTGATGGATCGGCTGTGTGTATTTTAGTGTAAAGATTAACAGACCCTGTTTCTTGCTCTGGGACTTCCAATGATCTTCAAAAATCAAGGGTCAGGATGTTTAGTTGATAAATTGTGGGAGGCTTCGACTAAAGTAGACCTCCAAATGAGGAGGGACAAAATTTGAGGAGGTTAAGCTGATGATATAGTACTGGATAGATGTTCACTTTTATTGACAATGCCCTACAAGTAGAGGATTGGATAATTCAACTAAATGTGAGAAAACAATGGAGGATAAAATGAGTTGGATGTTGTGTTGCAAAGAATTAGGCTAGAAGAATTGAGTAGTTAAGAGTGTTATATACCGGTGGTGAAGATACCTACAAGATGTTAGGGTTGATGTTTATACATATAAACACAGTTGATGTTTTACATATAAAGACATTATTTATGCATATAGTTAGAGTGTTACACGATTTTTACTCGTAGATTAGTAGAAGA

mRNA sequence

ATGAGTGCGCACACGAGCTCTACCGGAACAAAAACCTCCGAGCTTTGCTACCGGAAAATGGCGTCTGCGAATGCAATTTCTTCCGCATCCATTCTTTGTTCTTCCCAGAAGAGCTTGAGGAAAGTGAATCAACCGCAGAGTAACAGGGTGAATTACAGACAAGCGGGTAGCAGATTTGTTGTGAGAGCTACTGCAAAGGATATAGCGTTCGACCAGAGTTCAAGGACTGCACTTCAGTCTGGGATTGATAAGCTTGCCAATGCAGTCGGTCTGACTCTTGGACCCAGGGGGAGGAATGTTGTGCTGGATGAGTTCGGCAGTCCCAAAGTAGTAAATGATGGTGTGACAATTGCTCGTGCAATTGAGTTGCCTGATCCCATGGAGAATGCTGGGGCAGCTCTAATTAGGGAGGTCGCAAGTAAAACTAATGACTCTGCTGGTGATGGGACAACGACTGCCTCAGTCCTGGCGAGGGAAATTATCAAACTAGGCCTTCTGAATGTTACTTCCGGTGCAAATCCAGTATCACTGAAGAGAGGAATTGACAAGACAGTGCAAGGATTGATTGAAGAGCTTGAGAAGAAGGCTAGGGCTATCGAAGGCAGAGATGATATCAAAGCCGTTGCCTCTATCTCTGCTGGAAATGATGAGCTGATAGGGTCGATGATCGCTGATGCCATTGAAAAAGTGGGGCCCGACGGTGTCTTGTCCATTGAGTCATCATCTTCCTTTGAGACCACTGTGGAAGTTGAAGAAGGGATGGCGATTGATAGAGGCTACATTTCTCCTCAGTTTGTCACAAACCCTGAAAAGTTAATTGCTGAATTTGAGAATGCACGAGTGTTAATTACAGATCAGAAAATTTCAGCAATAAAGGATATAATCCCTATATTGGAGAAAACCACGCAATTGAGAGCTCCTTTGCTCATTATTGCTGAGGATATTACTGGTGAGGCTTTGGCTACACTTGTTGTGAACAAGTTGCGGGGTATTCTAAATGTTGCTGCCATTAAAGCTCCAGGATTTGGGGAAAGGAGAAAGGCTATGCTCCAAGACATTGCCATTTTGACAGGTGCTGAATTTCAAGCCAGTGATCTTGGATTGCTTGTAGAAAATACTACAATTGAACAGCTTGGTTTGGCCCGAAAAGTGACCATCTCGAAGGACACTACCACCATCATTGCTGACGCTGCTTCAAAAGATGAGCTACAAGCAAGGATTGCACAGCTAAAGAAGGAATTGGGTGAGACGGATTCTGTTTATGACACTGAGAAACTGGCTGAAAGAATTGCCAAATTGTCTGGTGGTGTTGCCGTCATTAAGGTTGGAGCTGCGACAGAGACTGAACTTGAGGACCGGAAGCTCCGTATTGAGGATGCAAAGAATGCAACTTTTGCTGCCATAGAGGAAGGGATTGTACCTGGTGGTGGTACTGCACTGGTTCACCTCTCAACTCTTGTCCCTGCAATCAAGGACAAGCTTGAGGATGCGGAAGAGAAGCTAGGTGCTGATATTATCCAAAAGGCGCTGGTAGCACCGGCATCCTTAATTGCCCAAAACGCTGGAATTGAAGGGGAAGTAGTGGTGGAGAAGATCAAGTCGAGTGAATGGGAAATTGGATATAACGCAATGACAGACAAGTACGAGAATCTGGTAGAGGCCGGTGTGATTGACCCAGCCAAGGTGACAAGATGTGCATTGCAGAATGCGGCTTCAGTTGCTGGCATGGTCCTAACCACACAGGCCATTGTAGTTGAAAAGCCCAAGCCCAAGGCACCCATCGCTGCACCACAAGGCCTTACCGTTTAAAATTCCTGGGAATCTTGATCATCTTCATTTGTAGGACAGACGTCAGATATGAAGAGTAGCTTCTTGCGGCGCGTGTTCATTGGAAACGGCGAGACAATAAGAAAAGATGGAACTCTGTATGTGAATGCGCTTTTTTTGAACGGTTCTGGAAACTTGCATTAGATATTGTAAGATCACGGAAATCAATTGCATCAAGTTTGTGTTTTTTTCATGGGAAAGAAATAATTTTGATGGATCGGCTGTGTGTATTTTAGTGTAAAGATTAACAGACCCTGTTTCTTGCTCTGGGACTTCCAATGATCTTCAAAAATCAAGGGTCAGGATGTTTAGTTGATAAATTGTGGGAGGCTTCGACTAAAGTAGACCTCCAAATGAGGAGGGACAAAATTTGAGGAGGTTAAGCTGATGATATAGTACTGGATAGATGTTCACTTTTATTGACAATGCCCTACAAGTAGAGGATTGGATAATTCAACTAAATGTGAGAAAACAATGGAGGATAAAATGAGTTGGATGTTGTGTTGCAAAGAATTAGGCTAGAAGAATTGAGTAGTTAAGAGTGTTATATACCGGTGGTGAAGATACCTACAAGATGTTAGGGTTGATGTTTATACATATAAACACAGTTGATGTTTTACATATAAAGACATTATTTATGCATATAGTTAGAGTGTTACACGATTTTTACTCGTAGATTAGTAGAAGA

Coding sequence (CDS)

ATGAGTGCGCACACGAGCTCTACCGGAACAAAAACCTCCGAGCTTTGCTACCGGAAAATGGCGTCTGCGAATGCAATTTCTTCCGCATCCATTCTTTGTTCTTCCCAGAAGAGCTTGAGGAAAGTGAATCAACCGCAGAGTAACAGGGTGAATTACAGACAAGCGGGTAGCAGATTTGTTGTGAGAGCTACTGCAAAGGATATAGCGTTCGACCAGAGTTCAAGGACTGCACTTCAGTCTGGGATTGATAAGCTTGCCAATGCAGTCGGTCTGACTCTTGGACCCAGGGGGAGGAATGTTGTGCTGGATGAGTTCGGCAGTCCCAAAGTAGTAAATGATGGTGTGACAATTGCTCGTGCAATTGAGTTGCCTGATCCCATGGAGAATGCTGGGGCAGCTCTAATTAGGGAGGTCGCAAGTAAAACTAATGACTCTGCTGGTGATGGGACAACGACTGCCTCAGTCCTGGCGAGGGAAATTATCAAACTAGGCCTTCTGAATGTTACTTCCGGTGCAAATCCAGTATCACTGAAGAGAGGAATTGACAAGACAGTGCAAGGATTGATTGAAGAGCTTGAGAAGAAGGCTAGGGCTATCGAAGGCAGAGATGATATCAAAGCCGTTGCCTCTATCTCTGCTGGAAATGATGAGCTGATAGGGTCGATGATCGCTGATGCCATTGAAAAAGTGGGGCCCGACGGTGTCTTGTCCATTGAGTCATCATCTTCCTTTGAGACCACTGTGGAAGTTGAAGAAGGGATGGCGATTGATAGAGGCTACATTTCTCCTCAGTTTGTCACAAACCCTGAAAAGTTAATTGCTGAATTTGAGAATGCACGAGTGTTAATTACAGATCAGAAAATTTCAGCAATAAAGGATATAATCCCTATATTGGAGAAAACCACGCAATTGAGAGCTCCTTTGCTCATTATTGCTGAGGATATTACTGGTGAGGCTTTGGCTACACTTGTTGTGAACAAGTTGCGGGGTATTCTAAATGTTGCTGCCATTAAAGCTCCAGGATTTGGGGAAAGGAGAAAGGCTATGCTCCAAGACATTGCCATTTTGACAGGTGCTGAATTTCAAGCCAGTGATCTTGGATTGCTTGTAGAAAATACTACAATTGAACAGCTTGGTTTGGCCCGAAAAGTGACCATCTCGAAGGACACTACCACCATCATTGCTGACGCTGCTTCAAAAGATGAGCTACAAGCAAGGATTGCACAGCTAAAGAAGGAATTGGGTGAGACGGATTCTGTTTATGACACTGAGAAACTGGCTGAAAGAATTGCCAAATTGTCTGGTGGTGTTGCCGTCATTAAGGTTGGAGCTGCGACAGAGACTGAACTTGAGGACCGGAAGCTCCGTATTGAGGATGCAAAGAATGCAACTTTTGCTGCCATAGAGGAAGGGATTGTACCTGGTGGTGGTACTGCACTGGTTCACCTCTCAACTCTTGTCCCTGCAATCAAGGACAAGCTTGAGGATGCGGAAGAGAAGCTAGGTGCTGATATTATCCAAAAGGCGCTGGTAGCACCGGCATCCTTAATTGCCCAAAACGCTGGAATTGAAGGGGAAGTAGTGGTGGAGAAGATCAAGTCGAGTGAATGGGAAATTGGATATAACGCAATGACAGACAAGTACGAGAATCTGGTAGAGGCCGGTGTGATTGACCCAGCCAAGGTGACAAGATGTGCATTGCAGAATGCGGCTTCAGTTGCTGGCATGGTCCTAACCACACAGGCCATTGTAGTTGAAAAGCCCAAGCCCAAGGCACCCATCGCTGCACCACAAGGCCTTACCGTTTAA

Protein sequence

MSAHTSSTGTKTSELCYRKMASANAISSASILCSSQKSLRKVNQPQSNRVNYRQAGSRFVVRATAKDIAFDQSSRTALQSGIDKLANAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLNVTSGANPVSLKRGIDKTVQGLIEELEKKARAIEGRDDIKAVASISAGNDELIGSMIADAIEKVGPDGVLSIESSSSFETTVEVEEGMAIDRGYISPQFVTNPEKLIAEFENARVLITDQKISAIKDIIPILEKTTQLRAPLLIIAEDITGEALATLVVNKLRGILNVAAIKAPGFGERRKAMLQDIAILTGAEFQASDLGLLVENTTIEQLGLARKVTISKDTTTIIADAASKDELQARIAQLKKELGETDSVYDTEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSTLVPAIKDKLEDAEEKLGADIIQKALVAPASLIAQNAGIEGEVVVEKIKSSEWEIGYNAMTDKYENLVEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAPIAAPQGLTV

Homology

[Close]

BLAST of CmaCh02G009050 vs. ExPASy Swiss-Prot
Match: P08926 (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum OX=3888 PE=1 SV=2)

HSP 1 Score: 948.3 bits (2450), Expect = 4.1e-275
Identity = 516/588 (87.76%), Postives = 553/588 (94.05%), Query Frame = 0


Query: 20  MASANAISSASILCS----SQKSLRKVNQPQSNRVNYRQAGSRFVVRATAKDIAFDQSSR 79
           MAS NA+SS SIL S    +Q SL K    Q  RVN+RQ  +RFVV+A AKDIAFDQ SR
Sbjct: 1   MASTNALSSTSILRSPTNQAQTSLSK-KVKQHGRVNFRQKPNRFVVKAAAKDIAFDQHSR 60

Query: 80  TALQSGIDKLANAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALI 139
           +A+Q+GIDKLA+AVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALI
Sbjct: 61  SAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALI 120

Query: 140 REVASKTNDSAGDGTTTASVLAREIIKLGLLNVTSGANPVSLKRGIDKTVQGLIEELEKK 199
           REVASKTNDSAGDGTTTAS+LAREIIKLGLLNVTSGANPVS+K+GIDKTV  L+EELEK 
Sbjct: 121 REVASKTNDSAGDGTTTASILAREIIKLGLLNVTSGANPVSIKKGIDKTVAALVEELEKL 180

Query: 200 ARAIEGRDDIKAVASISAGNDELIGSMIADAIEKVGPDGVLSIESSSSFETTVEVEEGMA 259
           AR ++G DDIKAVA+ISAGNDELIG MIA+AI+KVGPDGVLSIESS+SFETTVEVEEGM 
Sbjct: 181 ARPVKGGDDIKAVATISAGNDELIGKMIAEAIDKVGPDGVLSIESSNSFETTVEVEEGME 240

Query: 260 IDRGYISPQFVTNPEKLIAEFENARVLITDQKISAIKDIIPILEKTTQLRAPLLIIAEDI 319
           IDRGYISPQFVTNPEK I EFENARVLITDQKISAIKDIIP+LEKTTQLRAPLLII+EDI
Sbjct: 241 IDRGYISPQFVTNPEKSIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIISEDI 300

Query: 320 TGEALATLVVNKLRGILNVAAIKAPGFGERRKAMLQDIAILTGAEFQASDLGLLVENTTI 379
           TGEALATLVVNKLRGILNVAAIKAPGFGERRKA+LQDIAILTGAEFQASDLGLLVENTTI
Sbjct: 301 TGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVENTTI 360

Query: 380 EQLGLARKVTISKDTTTIIADAASKDELQARIAQLKKELGETDSVYDTEKLAERIAKLSG 439
           EQLGLARKVTISKD+TTIIADAASKDELQ+R+AQLKKEL ETDS+YD+EKLAERIAKLSG
Sbjct: 361 EQLGLARKVTISKDSTTIIADAASKDELQSRVAQLKKELSETDSIYDSEKLAERIAKLSG 420

Query: 440 GVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSTLVPAIKDKLE 499
           GVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLS  VPAIK+KLE
Sbjct: 421 GVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSGYVPAIKEKLE 480

Query: 500 DAEEKLGADIIQKALVAPASLIAQNAGIEGEVVVEKIKSSEWEIGYNAMTDKYENLVEAG 559
           DA+E+LGADI+QKALVAPA+LIAQNAGIEGEVVVEKIK+ EWE+GYNAMTD YENLVE+G
Sbjct: 481 DADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGEWEVGYNAMTDTYENLVESG 540

Query: 560 VIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAPI-AAPQGLTV 603
           VIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKA + AAPQGLT+
Sbjct: 541 VIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAAVAAAPQGLTI 587

[Close]

BLAST of CmaCh02G009050 vs. ExPASy Swiss-Prot
Match: P21238 (Chaperonin 60 subunit alpha 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN60A1 PE=1 SV=2)

HSP 1 Score: 928.7 bits (2399), Expect = 3.3e-269
Identity = 504/586 (86.01%), Postives = 548/586 (93.52%), Query Frame = 0


Query: 20  MASANAISSASILCSSQKS-LRKVNQPQSNRVNY-RQAGSRFVVRATAKDIAFDQSSRTA 79
           MASANA+SSAS+LCSS++S L   NQ Q  RV+Y ++   RF VRA  K+IAFDQ SR A
Sbjct: 1   MASANALSSASVLCSSRQSKLGGGNQQQGQRVSYNKRTIRRFSVRANVKEIAFDQHSRAA 60

Query: 80  LQSGIDKLANAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIRE 139
           LQ+GIDKLA+ VGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELP+ MENAGAALIRE
Sbjct: 61  LQAGIDKLADCVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPNAMENAGAALIRE 120

Query: 140 VASKTNDSAGDGTTTASVLAREIIKLGLLNVTSGANPVSLKRGIDKTVQGLIEELEKKAR 199
           VASKTNDSAGDGTTTAS+LAREIIK GLL+VTSGANPVSLKRGIDKTVQGLIEEL+KKAR
Sbjct: 121 VASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKAR 180

Query: 200 AIEGRDDIKAVASISAGNDELIGSMIADAIEKVGPDGVLSIESSSSFETTVEVEEGMAID 259
            ++GRDDI+AVASISAGND+LIGSMIADAI+KVGPDGVLSIESSSSFETTVEVEEGM ID
Sbjct: 181 PVKGRDDIRAVASISAGNDDLIGSMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEID 240

Query: 260 RGYISPQFVTNPEKLIAEFENARVLITDQKISAIKDIIPILEKTTQLRAPLLIIAEDITG 319
           RGYISPQFVTNPEKL+AEFENARVLITDQKI+AIKDIIPILEKTTQLRAPLLIIAED+TG
Sbjct: 241 RGYISPQFVTNPEKLLAEFENARVLITDQKITAIKDIIPILEKTTQLRAPLLIIAEDVTG 300

Query: 320 EALATLVVNKLRGILNVAAIKAPGFGERRKAMLQDIAILTGAEFQASDLGLLVENTTIEQ 379
           EALATLVVNKLRG+LNV A+KAPGFGERRKAMLQDIAILTGAE+ A D+ LLVEN TI+Q
Sbjct: 301 EALATLVVNKLRGVLNVVAVKAPGFGERRKAMLQDIAILTGAEYLAMDMSLLVENATIDQ 360

Query: 380 LGLARKVTISKDTTTIIADAASKDELQARIAQLKKELGETDSVYDTEKLAERIAKLSGGV 439
           LG+ARKVTISKD+TT+IADAASKDELQARIAQLKKEL ETDSVYD+EKLAERIAKLSGGV
Sbjct: 361 LGIARKVTISKDSTTLIADAASKDELQARIAQLKKELFETDSVYDSEKLAERIAKLSGGV 420

Query: 440 AVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSTLVPAIKDKLEDA 499
           AVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGG ALVHLST++PAIK+  EDA
Sbjct: 421 AVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVIPAIKETFEDA 480

Query: 500 EEKLGADIIQKALVAPASLIAQNAGIEGEVVVEKIKSSEWEIGYNAMTDKYENLVEAGVI 559
           +E+LGADI+QKAL++PA+LIAQNAG+EGEVVVEKI  S+WE GYNAMTD YENL EAGVI
Sbjct: 481 DERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSDWENGYNAMTDTYENLFEAGVI 540

Query: 560 DPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAP-IAAPQGLTV 603
           DPAKVTRCALQNAASVAGMVLTTQAIVV+KPKPKAP  AAP+GL V
Sbjct: 541 DPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 586

[Close]

BLAST of CmaCh02G009050 vs. ExPASy Swiss-Prot
Match: P21239 (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus OX=3708 PE=2 SV=2)

HSP 1 Score: 914.8 bits (2363), Expect = 5.0e-265
Identity = 488/546 (89.38%), Postives = 523/546 (95.79%), Query Frame = 0


Query: 58  RFVVRATAKDIAFDQSSRTALQSGIDKLANAVGLTLGPRGRNVVLDEFGSPKVVNDGVTI 117
           RF VRA  K+I+FDQSSR ALQ+GIDKLA+AVGLTLGPRGRNVVLDEFGSPKVVNDGVTI
Sbjct: 1   RFSVRANVKEISFDQSSRAALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTI 60

Query: 118 ARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLNVTSGANPVSL 177
           ARAIELPD MENAGAALIREVASKTNDSAGDGTTTASVLAREIIK GLL+VTSGANPVSL
Sbjct: 61  ARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSL 120

Query: 178 KRGIDKTVQGLIEELEKKARAIEGRDDIKAVASISAGNDELIGSMIADAIEKVGPDGVLS 237
           KRGIDKTVQ LIEELEK+AR ++G  DIKAVA+ISAGNDEL+G+MIADAI+KVGPDGVLS
Sbjct: 121 KRGIDKTVQALIEELEKRARPVKGGSDIKAVATISAGNDELVGTMIADAIDKVGPDGVLS 180

Query: 238 IESSSSFETTVEVEEGMAIDRGYISPQFVTNPEKLIAEFENARVLITDQKISAIKDIIPI 297
           IESSSSFETTVEVEEGM IDRGYISPQFVTNPEKL+ EFENARVLITDQKI+AIKDIIPI
Sbjct: 181 IESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLLVEFENARVLITDQKITAIKDIIPI 240

Query: 298 LEKTTQLRAPLLIIAEDITGEALATLVVNKLRGILNVAAIKAPGFGERRKAMLQDIAILT 357
           LEKTTQLRAPLLIIAED+TGEALATLVVNKLRG+LNV A+KAPGFGERRKAMLQDIAILT
Sbjct: 241 LEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGVLNVVAVKAPGFGERRKAMLQDIAILT 300

Query: 358 GAEFQASDLGLLVENTTIEQLGLARKVTISKDTTTIIADAASKDELQARIAQLKKELGET 417
           GAE+QA D+GLLVENTTI+QLG+ARKVTISKD+TT+IADAASKDELQARI+QLKKEL ET
Sbjct: 301 GAEYQALDMGLLVENTTIDQLGIARKVTISKDSTTLIADAASKDELQARISQLKKELSET 360

Query: 418 DSVYDTEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGG 477
           DSVYD+EKLAERIAKL+GGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGG
Sbjct: 361 DSVYDSEKLAERIAKLAGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGG 420

Query: 478 TALVHLSTLVPAIKDKLEDAEEKLGADIIQKALVAPASLIAQNAGIEGEVVVEKIKSSEW 537
             LVHLST++PAIK+KLEDA+E+LGADI+QKALVAPA+LIAQNAGIEGEVVVEKI  SEW
Sbjct: 421 ATLVHLSTVIPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSEW 480

Query: 538 EIGYNAMTDKYENLVEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAPIAA- 597
           EIGYNAMTD YENL+EAGVIDPAKVTRCALQNAASVAGMVLTTQAIVV+KPKPKAP AA 
Sbjct: 481 EIGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPTAAP 540

Query: 598 PQGLTV 603
           PQGL V
Sbjct: 541 PQGLMV 546

[Close]

BLAST of CmaCh02G009050 vs. ExPASy Swiss-Prot
Match: P34794 (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 899.0 bits (2322), Expect = 2.8e-260
Identity = 495/585 (84.62%), Postives = 536/585 (91.62%), Query Frame = 0


Query: 20  MASANAISSASILCSS-QKSLRKVNQPQSNRVNYRQAGSRFVVRATAKDIAFDQSSRTAL 79
           MA+ANA+SS S+LCSS Q  L   +Q +  RV+YR+A  RF +RA  K+IAFDQSSR AL
Sbjct: 1   MATANALSSPSVLCSSRQGKLSGGSQQKGQRVSYRKANRRFSLRANVKEIAFDQSSRAAL 60

Query: 80  QSGIDKLANAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV 139
           Q+GIDKLA+AVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPD MENAGAALIREV
Sbjct: 61  QAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREV 120

Query: 140 ASKTNDSAGDGTTTASVLAREIIKLGLLNVTSGANPVSLKRGIDKTVQGLIEELEKKARA 199
           ASKTNDSAGDGTTTASVLAREIIK GLL+VTSGANPVSLKRGIDKTVQ LIEELEK++R 
Sbjct: 121 ASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRSRP 180

Query: 200 IEGRDDIKAVASISAGNDELIGSMIADAIEKVGPDGVLSIESSSSFETTVEVEEGMAIDR 259
           ++G  DIKAVA+ISAGNDELIG+MIADAI+KVGPDGV  IESSSSFETTVEVEEGM IDR
Sbjct: 181 VKGGRDIKAVATISAGNDELIGAMIADAIDKVGPDGVSPIESSSSFETTVEVEEGMEIDR 240

Query: 260 GYISPQFVTNPEKLIAEFENARVLITDQKISAIKDIIPILEKTTQLRAPLLIIAEDITGE 319
           GYISPQFVTNPEKL+ EFENARVLITDQKI+AIKDIIPILEKTTQLRAPLLIIAED+TGE
Sbjct: 241 GYISPQFVTNPEKLLVEFENARVLITDQKITAIKDIIPILEKTTQLRAPLLIIAEDVTGE 300

Query: 320 ALATLVVNKLRGILNVAAIKAPGFGERRKAMLQDIAILTGAEFQASDLGLLVENTTIEQL 379
           ALATLVVNKLRG+LNV A+KAPGFGERRKAMLQDIAILT     A D+GLLVENTTI+QL
Sbjct: 301 ALATLVVNKLRGVLNVVAVKAPGFGERRKAMLQDIAILTEPS-TALDMGLLVENTTIDQL 360

Query: 380 GLARKVTISKDTTTIIADAASKDELQARIAQLKKELGETDSVYDTEKLAERIAKLSGGVA 439
           G+ARKVTISKD+TT+IADAASK ELQARI+QLKKE  ETDSVYD+EKLAERIAKLSGGVA
Sbjct: 361 GIARKVTISKDSTTLIADAASKAELQARISQLKKESFETDSVYDSEKLAERIAKLSGGVA 420

Query: 440 VIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSTLVPAIKDKLEDAE 499
           VIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGG  LVHLST++PAIK+  EDA+
Sbjct: 421 VIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKETFEDAD 480

Query: 500 EKLGADIIQKALVAPASLIAQNAGIEGEVVVEKIKSSEWEIGYNAMTDKYENLVEAGVID 559
            +LGADI+QKALVA  SLIAQNAGIEGEVVVEKI  SEWE+GYNAMTD YENL+EAGVID
Sbjct: 481 VRLGADIVQKALVA-QSLIAQNAGIEGEVVVEKIMFSEWELGYNAMTDTYENLLEAGVID 540

Query: 560 PAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAP-IAAPQGLTV 603
           PAKVTRCALQNAASVAGMVLTTQAIVV+KPKPKAP  AAP+GL V
Sbjct: 541 PAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 583

[Close]

BLAST of CmaCh02G009050 vs. ExPASy Swiss-Prot
Match: P08824 (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis OX=3988 PE=2 SV=1)

HSP 1 Score: 862.4 bits (2227), Expect = 2.9e-249
Identity = 456/495 (92.12%), Postives = 486/495 (98.18%), Query Frame = 0


Query: 75  RTALQSGIDKLANAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAAL 134
           RTALQSGIDKLA+AVGLTLGPRGRNVVLDEFGSPKVVN+GVTIARAIELPDPMENAGAAL
Sbjct: 1   RTALQSGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNEGVTIARAIELPDPMENAGAAL 60

Query: 135 IREVASKTNDSAGDGTTTASVLAREIIKLGLLNVTSGANPVSLKRGIDKTVQGLIEELEK 194
           IREVASKTNDSAGDGTTTASVLAREIIKLGLL+VTSGANPVS+KRGIDKTVQGLIEELEK
Sbjct: 61  IREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSIKRGIDKTVQGLIEELEK 120

Query: 195 KARAIEGRDDIKAVASISAGNDELIGSMIADAIEKVGPDGVLSIESSSSFETTVEVEEGM 254
           KAR ++GRDDIKAVASISAGNDELIG+MIADAI+KVGPDGVLSIESSSSFETTVEVEEGM
Sbjct: 121 KARPVKGRDDIKAVASISAGNDELIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGM 180

Query: 255 AIDRGYISPQFVTNPEKLIAEFENARVLITDQKISAIKDIIPILEKTTQLRAPLLIIAED 314
            IDRGYISPQFVTNPEKLI EFENARVL+TDQKI+AIKDIIP+LEKTTQLRAPLLIIAED
Sbjct: 181 EIDRGYISPQFVTNPEKLICEFENARVLVTDQKITAIKDIIPLLEKTTQLRAPLLIIAED 240

Query: 315 ITGEALATLVVNKLRGILNVAAIKAPGFGERRKAMLQDIAILTGAEFQASDLGLLVENTT 374
           +TGEALATLVVNK+RGILNVAAIKAPGFGERRKA+LQDIAILTGAEFQASDLGLLVENT+
Sbjct: 241 VTGEALATLVVNKMRGILNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVENTS 300

Query: 375 IEQLGLARKVTISKDTTTIIADAASKDELQARIAQLKKELGETDSVYDTEKLAERIAKLS 434
           +EQLG+ARKVTI+KD+TT+IADAASKDELQARIAQLK+EL ETDSVYD+EKLAERIAKLS
Sbjct: 301 VEQLGIARKVTITKDSTTLIADAASKDELQARIAQLKRELAETDSVYDSEKLAERIAKLS 360

Query: 435 GGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSTLVPAIKDKL 494
           GGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGG ALVHLST+VPAI  + 
Sbjct: 361 GGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVVPAINGED 420

Query: 495 EDAEEKLGADIIQKALVAPASLIAQNAGIEGEVVVEKIKSSEWEIGYNAMTDKYENLVEA 554
           +DA+E+LGADI+QKALVAPASLIAQNAGIEGEVVVEK+K+ EWEIGYNAMTDKYENLVEA
Sbjct: 421 KDADERLGADILQKALVAPASLIAQNAGIEGEVVVEKVKAREWEIGYNAMTDKYENLVEA 480

Query: 555 GVIDPAKVTRCALQN 570
           GVIDPAKVTRCALQN
Sbjct: 481 GVIDPAKVTRCALQN 495

[Close]

BLAST of CmaCh02G009050 vs. TAIR 10
Match: AT2G28000.1 (chaperonin-60alpha )

HSP 1 Score: 928.7 bits (2399), Expect = 2.4e-270
Identity = 504/586 (86.01%), Postives = 548/586 (93.52%), Query Frame = 0


Query: 20  MASANAISSASILCSSQKS-LRKVNQPQSNRVNY-RQAGSRFVVRATAKDIAFDQSSRTA 79
           MASANA+SSAS+LCSS++S L   NQ Q  RV+Y ++   RF VRA  K+IAFDQ SR A
Sbjct: 1   MASANALSSASVLCSSRQSKLGGGNQQQGQRVSYNKRTIRRFSVRANVKEIAFDQHSRAA 60

Query: 80  LQSGIDKLANAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIRE 139
           LQ+GIDKLA+ VGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELP+ MENAGAALIRE
Sbjct: 61  LQAGIDKLADCVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPNAMENAGAALIRE 120

Query: 140 VASKTNDSAGDGTTTASVLAREIIKLGLLNVTSGANPVSLKRGIDKTVQGLIEELEKKAR 199
           VASKTNDSAGDGTTTAS+LAREIIK GLL+VTSGANPVSLKRGIDKTVQGLIEEL+KKAR
Sbjct: 121 VASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKAR 180

Query: 200 AIEGRDDIKAVASISAGNDELIGSMIADAIEKVGPDGVLSIESSSSFETTVEVEEGMAID 259
            ++GRDDI+AVASISAGND+LIGSMIADAI+KVGPDGVLSIESSSSFETTVEVEEGM ID
Sbjct: 181 PVKGRDDIRAVASISAGNDDLIGSMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEID 240

Query: 260 RGYISPQFVTNPEKLIAEFENARVLITDQKISAIKDIIPILEKTTQLRAPLLIIAEDITG 319
           RGYISPQFVTNPEKL+AEFENARVLITDQKI+AIKDIIPILEKTTQLRAPLLIIAED+TG
Sbjct: 241 RGYISPQFVTNPEKLLAEFENARVLITDQKITAIKDIIPILEKTTQLRAPLLIIAEDVTG 300

Query: 320 EALATLVVNKLRGILNVAAIKAPGFGERRKAMLQDIAILTGAEFQASDLGLLVENTTIEQ 379
           EALATLVVNKLRG+LNV A+KAPGFGERRKAMLQDIAILTGAE+ A D+ LLVEN TI+Q
Sbjct: 301 EALATLVVNKLRGVLNVVAVKAPGFGERRKAMLQDIAILTGAEYLAMDMSLLVENATIDQ 360

Query: 380 LGLARKVTISKDTTTIIADAASKDELQARIAQLKKELGETDSVYDTEKLAERIAKLSGGV 439
           LG+ARKVTISKD+TT+IADAASKDELQARIAQLKKEL ETDSVYD+EKLAERIAKLSGGV
Sbjct: 361 LGIARKVTISKDSTTLIADAASKDELQARIAQLKKELFETDSVYDSEKLAERIAKLSGGV 420

Query: 440 AVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSTLVPAIKDKLEDA 499
           AVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGG ALVHLST++PAIK+  EDA
Sbjct: 421 AVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVIPAIKETFEDA 480

Query: 500 EEKLGADIIQKALVAPASLIAQNAGIEGEVVVEKIKSSEWEIGYNAMTDKYENLVEAGVI 559
           +E+LGADI+QKAL++PA+LIAQNAG+EGEVVVEKI  S+WE GYNAMTD YENL EAGVI
Sbjct: 481 DERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSDWENGYNAMTDTYENLFEAGVI 540

Query: 560 DPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAP-IAAPQGLTV 603
           DPAKVTRCALQNAASVAGMVLTTQAIVV+KPKPKAP  AAP+GL V
Sbjct: 541 DPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 586

[Close]

BLAST of CmaCh02G009050 vs. TAIR 10
Match: AT5G18820.1 (TCP-1/cpn60 chaperonin family protein )

HSP 1 Score: 634.8 bits (1636), Expect = 7.1e-182
Identity = 330/538 (61.34%), Postives = 433/538 (80.48%), Query Frame = 0


Query: 60  VVRATAKDIAFDQSSRTALQSGIDKLANAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIAR 119
           VVRA AK I + + SR  LQ+GIDKLA+AV +TLGPRGRNVVL E  + KV+NDGVTIA+
Sbjct: 30  VVRAGAKRILYGKDSREKLQAGIDKLADAVSITLGPRGRNVVLAEKDTIKVINDGVTIAK 89

Query: 120 AIELPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLNVTSGANPVSLKR 179
           +IELPD +ENAGA LI+EVA K N+SAGDGTTTA +LARE+IK G L +  GAN VS+K 
Sbjct: 90  SIELPDTIENAGATLIQEVAIKMNESAGDGTTTAIILAREMIKAGSLAIAFGANAVSVKN 149

Query: 180 GIDKTVQGLIEELEKKARAIEGRDDIKAVASISAGNDELIGSMIADAIEKVGPDGVLSIE 239
           G++KTV+ L+  L+ K+  ++G++DIKAVASISAGNDE +G++IA+ +EK+GPDGV+SIE
Sbjct: 150 GMNKTVKELVRVLQMKSIPVQGKNDIKAVASISAGNDEFVGNLIAETVEKIGPDGVISIE 209

Query: 240 SSSSFETTVEVEEGMAIDRGYISPQFVTNPEKLIAEFENARVLITDQKISAIKDIIPILE 299
           SSS+ ET+V VEEGM  D+GY+SP F+TN EK   EF+ A++L+TDQKI++ K+++P+LE
Sbjct: 210 SSSTSETSVIVEEGMKFDKGYMSPHFITNQEKSTVEFDKAKILVTDQKITSAKELVPLLE 269

Query: 300 KTTQLRAPLLIIAEDITGEALATLVVNKLRGILNVAAIKAPGFGERRKAMLQDIAILTGA 359
           KT+QL  PLLIIAEDI+ E L  LVVNK +G++NVA +K PG  + +KA+LQDIA++TGA
Sbjct: 270 KTSQLSVPLLIIAEDISAEVLEILVVNKKQGLINVAVVKCPGMLDGKKALLQDIALMTGA 329

Query: 360 EFQASDLGLLVENTTIEQLGLARKVTISKDTTTIIADAASKDELQARIAQLKKELGETDS 419
           ++ + DLG+ +   T +QLG++R+V I+ ++TTI+ADA++K E+QARIAQ+KK+L ETD+
Sbjct: 330 DYLSGDLGMSLMGATSDQLGVSRRVVITANSTTIVADASTKPEIQARIAQMKKDLAETDN 389

Query: 420 VYDTEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTA 479
            Y ++K+AERIAKL+GGVAVIKVG  TETELEDRKLRIEDAKNATFAA+ EGIVPGGG  
Sbjct: 390 SYLSKKIAERIAKLTGGVAVIKVGGHTETELEDRKLRIEDAKNATFAAMREGIVPGGGAT 449

Query: 480 LVHLSTLVPAIKDKL-EDAEEKLGADIIQKALVAPASLIAQNAGIEGEVVVEKIKSSEWE 539
            +HL   +P IK  L ED+ E++GADI+  AL APA  IA NAG++G VVV+K +  EW 
Sbjct: 450 YIHLLDEIPRIKKNLMEDSYEQIGADIVAMALTAPAMAIATNAGVDGSVVVQKTRELEWR 509

Query: 540 IGYNAMTDKYENLVEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEK---PKPKAP 594
            GYNAM+ KYE+L+ AG+ DP +V+R ALQNA SVAG++LTTQA++VEK   PKP  P
Sbjct: 510 SGYNAMSGKYEDLLNAGIADPCRVSRFALQNAVSVAGIILTTQAVLVEKIKQPKPAVP 567

[Close]

BLAST of CmaCh02G009050 vs. TAIR 10
Match: AT3G13470.1 (TCP-1/cpn60 chaperonin family protein )

HSP 1 Score: 518.8 bits (1335), Expect = 5.6e-147
Identity = 296/595 (49.75%), Postives = 417/595 (70.08%), Query Frame = 0


Query: 6   SSTGTKTSELCYRKMASANAISSASILCSSQKSLRKVNQPQSNRVNYRQAGSRFVVRATA 65
           +ST T TS L      +A  +SSA+ + SS             R N     SR  +   A
Sbjct: 2   ASTFTATSSLGSLLAPNAIKLSSATSISSSS---------FGRRHNVCVRRSRPAIVCAA 61

Query: 66  KDIAFDQSSRT--ALQSGIDKLANAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIE 125
           K++ F++   T   LQ+G++KLA+ VG+TLGP+GRNVVL+ ++GSP++VNDGVT+AR +E
Sbjct: 62  KELHFNKDGTTIRKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVE 121

Query: 126 LPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLNVTSGANPVSLKRGID 185
           L DP+EN GA L+R+ A+KTND AGDGTTT+ VLA+  I  G+  V +GANPV + RGI+
Sbjct: 122 LEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIE 181

Query: 186 KTVQGLIEELEKKARAIEGRDDIKAVASISAGNDELIGSMIADAIEKVGPDGVLSIESSS 245
           KT + L+ EL+  ++ +E   ++  VA++SAGN+  +GSMIA+A+ KVG  GV+++E   
Sbjct: 182 KTAKALVNELKLMSKEVED-SELADVAAVSAGNNHEVGSMIAEAMSKVGRKGVVTLEEGK 241

Query: 246 SFETTVEVEEGMAIDRGYISPQFVTNPEKLIAEFENARVLITDQKISAIKDIIPILEKTT 305
           S E  + V EGM  DRGYISP FVT+ EK+  E++N ++L+ D+K++  +D++ +LE   
Sbjct: 242 SAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKVTNARDLVGVLEDAI 301

Query: 306 QLRAPLLIIAEDITGEALATLVVNKLRGILNVAAIKAPGFGERRKAMLQDIAILTGAEFQ 365
           +   P+LIIAEDI  EALATLVVNKLRG L +AA+KAPGFGER+   L DIAILTGA   
Sbjct: 302 RGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTGATVI 361

Query: 366 ASDLGLLVENTTIEQLGLARKVTISKDTTTIIADAASKDELQARIAQLKKELGETDSVYD 425
             ++GL ++    E LG A KV ++K+ TTI+ D  +++ +  R+ Q++  + + +  Y+
Sbjct: 362 REEVGLSLDKAGKEVLGNASKVVLTKEMTTIVGDGTTQEAVNKRVVQIRNLIEQAEQDYE 421

Query: 426 TEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVH 485
            EKL ERIAKLSGGVAVI+VGA TETEL+++KLR+EDA NAT AA+EEGIV GGG  L+ 
Sbjct: 422 KEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLR 481

Query: 486 LSTLVPAIKDKLEDAEEKLGADIIQKALVAPASLIAQNAGIEGEVVVEKIKSSE-WEIGY 545
           L++ V AIKD LE+ EEK+GA+I+++AL  P  LIA+NAG+ G VV EK+ +++  + GY
Sbjct: 482 LASKVDAIKDTLENDEEKVGAEIVKRALSYPLKLIAKNAGVNGSVVSEKVLANDNVKFGY 541

Query: 546 NAMTDKYENLVEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAPIAA 597
           NA T KYE+L+ AG+IDP KV RC L++AASVA   L +  +VVE P+P+ P+ A
Sbjct: 542 NAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIPEPE-PVPA 585

[Close]

BLAST of CmaCh02G009050 vs. TAIR 10
Match: AT5G56500.1 (TCP-1/cpn60 chaperonin family protein )

HSP 1 Score: 518.1 bits (1333), Expect = 9.6e-147
Identity = 305/598 (51.00%), Postives = 419/598 (70.07%), Query Frame = 0


Query: 6   SSTGTKTSELCYRKMASANAISSASILCSSQKSLRKVNQPQSNRVNYRQAGSRFVVRATA 65
           +ST + TS +       +N +SS   + SS        + QS      Q  +RF     A
Sbjct: 2   ASTFSATSSMGSSLAPPSNRLSSFVSISSS-----SFGRTQS----IAQRKARFPKIYAA 61

Query: 66  KDIAF--DQSSRTALQSGIDKLANAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIE 125
           K + F  D ++   LQ+G++KLA+ VG+TLGP+GRNVVL+ ++GSP++VNDGVT+AR +E
Sbjct: 62  KQLHFNKDGTAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVE 121

Query: 126 LPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLNVTSGANPVSLKRGID 185
           L DP+EN GA L+R+ ASKTND AGDGTTT+ VLA+ +I  G+  V +GANPV + RGI+
Sbjct: 122 LEDPVENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIE 181

Query: 186 KTVQGLIEELEKKARAIEGRDDIKAVASISAGNDELIGSMIADAIEKVGPDGVLSIESSS 245
           KT + L+ EL+K ++ +E   ++  VA++SAGN+  +G+MIA+A+ KVG  GV+++E   
Sbjct: 182 KTTKALVAELKKMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMAKVGRKGVVTLEEGK 241

Query: 246 SFETTVEVEEGMAIDRGYISPQFVTNPEKLIAEFENARVLITDQKISAIKDIIPILEKTT 305
           S E ++ V EGM  DRGYISP FVT+ EK+ AE+EN ++ + D+KI+  +DII ILE   
Sbjct: 242 SAENSLYVVEGMQFDRGYISPYFVTDSEKMCAEYENCKLFLVDKKITNARDIISILEDAI 301

Query: 306 QLRAPLLIIAEDITGEALATLVVNKLRGILNVAAIKAPGFGERRKAMLQDIAILTGAEFQ 365
           +   PLLIIAEDI  E LATLVVNKLRG + VAA+KAPGFGER+   L DIA LTGA   
Sbjct: 302 KGGYPLLIIAEDIEQEPLATLVVNKLRGTIKVAALKAPGFGERKSQYLDDIAALTGATVI 361

Query: 366 ASDLGLLVENTTIEQLGLARKVTISKDTTTIIADAASKDELQARIAQLKKELGETDSVYD 425
             ++GL +E    E LG A KV ++KDTTTI+ D ++++ ++ R+ Q+K  +   +  Y+
Sbjct: 362 REEVGLQLEKVGPEVLGNAGKVVLTKDTTTIVGDGSTEEVVKKRVEQIKNLIEAAEQDYE 421

Query: 426 TEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVH 485
            EKL ERIAKLSGGVAVI+VGA TETEL+++KLR+EDA NAT AA+EEGIV GGG  L+ 
Sbjct: 422 KEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLR 481

Query: 486 LSTLVPAIKDKLEDAEEKLGADIIQKALVAPASLIAQNAGIEGEVVVEKIKSSE-WEIGY 545
           L++ V AIK+ L + EEK+GADI++KAL  P  LIA+NAG+ G VV EK+ SS+  + GY
Sbjct: 482 LASKVDAIKETLANDEEKVGADIVKKALSYPLKLIAKNAGVNGSVVSEKVLSSDNPKHGY 541

Query: 546 NAMTDKYENLVEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAPIAAPQG 600
           NA T KYE+L+ AG+IDP KV RC L++A+SVA   L +  +VVE  +P++  AAP G
Sbjct: 542 NAATGKYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPES--AAPAG 587

[Close]

BLAST of CmaCh02G009050 vs. TAIR 10
Match: AT5G56500.2 (TCP-1/cpn60 chaperonin family protein )

HSP 1 Score: 518.1 bits (1333), Expect = 9.6e-147
Identity = 305/598 (51.00%), Postives = 419/598 (70.07%), Query Frame = 0


Query: 6   SSTGTKTSELCYRKMASANAISSASILCSSQKSLRKVNQPQSNRVNYRQAGSRFVVRATA 65
           +ST + TS +       +N +SS   + SS        + QS      Q  +RF     A
Sbjct: 2   ASTFSATSSMGSSLAPPSNRLSSFVSISSS-----SFGRTQS----IAQRKARFPKIYAA 61

Query: 66  KDIAF--DQSSRTALQSGIDKLANAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIE 125
           K + F  D ++   LQ+G++KLA+ VG+TLGP+GRNVVL+ ++GSP++VNDGVT+AR +E
Sbjct: 62  KQLHFNKDGTAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVE 121

Query: 126 LPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLNVTSGANPVSLKRGID 185
           L DP+EN GA L+R+ ASKTND AGDGTTT+ VLA+ +I  G+  V +GANPV + RGI+
Sbjct: 122 LEDPVENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIE 181

Query: 186 KTVQGLIEELEKKARAIEGRDDIKAVASISAGNDELIGSMIADAIEKVGPDGVLSIESSS 245
           KT + L+ EL+K ++ +E   ++  VA++SAGN+  +G+MIA+A+ KVG  GV+++E   
Sbjct: 182 KTTKALVAELKKMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMAKVGRKGVVTLEEGK 241

Query: 246 SFETTVEVEEGMAIDRGYISPQFVTNPEKLIAEFENARVLITDQKISAIKDIIPILEKTT 305
           S E ++ V EGM  DRGYISP FVT+ EK+ AE+EN ++ + D+KI+  +DII ILE   
Sbjct: 242 SAENSLYVVEGMQFDRGYISPYFVTDSEKMCAEYENCKLFLVDKKITNARDIISILEDAI 301

Query: 306 QLRAPLLIIAEDITGEALATLVVNKLRGILNVAAIKAPGFGERRKAMLQDIAILTGAEFQ 365
           +   PLLIIAEDI  E LATLVVNKLRG + VAA+KAPGFGER+   L DIA LTGA   
Sbjct: 302 KGGYPLLIIAEDIEQEPLATLVVNKLRGTIKVAALKAPGFGERKSQYLDDIAALTGATVI 361

Query: 366 ASDLGLLVENTTIEQLGLARKVTISKDTTTIIADAASKDELQARIAQLKKELGETDSVYD 425
             ++GL +E    E LG A KV ++KDTTTI+ D ++++ ++ R+ Q+K  +   +  Y+
Sbjct: 362 REEVGLQLEKVGPEVLGNAGKVVLTKDTTTIVGDGSTEEVVKKRVEQIKNLIEAAEQDYE 421

Query: 426 TEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVH 485
            EKL ERIAKLSGGVAVI+VGA TETEL+++KLR+EDA NAT AA+EEGIV GGG  L+ 
Sbjct: 422 KEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLR 481

Query: 486 LSTLVPAIKDKLEDAEEKLGADIIQKALVAPASLIAQNAGIEGEVVVEKIKSSE-WEIGY 545
           L++ V AIK+ L + EEK+GADI++KAL  P  LIA+NAG+ G VV EK+ SS+  + GY
Sbjct: 482 LASKVDAIKETLANDEEKVGADIVKKALSYPLKLIAKNAGVNGSVVSEKVLSSDNPKHGY 541

Query: 546 NAMTDKYENLVEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAPIAAPQG 600
           NA T KYE+L+ AG+IDP KV RC L++A+SVA   L +  +VVE  +P++  AAP G
Sbjct: 542 NAATGKYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPES--AAPAG 587

The following BLAST results are available for this feature:

BLAST of CmaCh02G009050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P08926	4.1e-275	87.76	RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sati...	[more]
P21238	3.3e-269	86.01	Chaperonin 60 subunit alpha 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
P21239	5.0e-265	89.38	RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS...	[more]
P34794	2.8e-260	84.62	RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica n...	[more]
P08824	2.9e-249	92.12	RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus commun...	[more]

BLAST of CmaCh02G009050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28000.1	2.4e-270	86.01	chaperonin-60alpha	[more]
AT5G18820.1	7.1e-182	61.34	TCP-1/cpn60 chaperonin family protein	[more]
AT3G13470.1	5.6e-147	49.75	TCP-1/cpn60 chaperonin family protein	[more]
AT5G56500.1	9.6e-147	51.00	TCP-1/cpn60 chaperonin family protein	[more]
AT5G56500.2	9.6e-147	51.00	TCP-1/cpn60 chaperonin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 393..420
None	No IPR available	PANTHER	PTHR45633:SF39	BNAA04G16190D PROTEIN	coord: 20..597
None	No IPR available	PANTHER	PTHR45633	60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL	coord: 20..597
IPR001844	Chaperonin Cpn60	PRINTS	PR00298	CHAPERONIN60	coord: 329..352 score: 71.1 coord: 411..436 score: 57.07 coord: 89..115 score: 40.38 coord: 459..480 score: 74.1 coord: 144..171 score: 58.88
IPR001844	Chaperonin Cpn60	TIGRFAM	TIGR02348	TIGR02348	coord: 65..589 e-value: 1.3E-223 score: 741.2
IPR001844	Chaperonin Cpn60	HAMAP	MF_00600	CH60	coord: 64..600 score: 36.773693
IPR001844	Chaperonin Cpn60	CDD	cd03344	GroEL	coord: 66..586 e-value: 0.0 score: 822.087
IPR027409	GroEL-like apical domain superfamily	GENE3D	3.50.7.10	GroEL	coord: 253..434 e-value: 1.9E-214 score: 714.8
IPR027409	GroEL-like apical domain superfamily	SUPERFAMILY	52029	GroEL apical domain-like	coord: 245..437
IPR027410	TCP-1-like chaperonin intermediate domain superfamily	GENE3D	3.30.260.10		coord: 198..471 e-value: 1.9E-214 score: 714.8
IPR027410	TCP-1-like chaperonin intermediate domain superfamily	SUPERFAMILY	54849	GroEL-intermediate domain like	coord: 199..262
IPR002423	Chaperonin Cpn60/TCP-1 family	PFAM	PF00118	Cpn60_TCP1	coord: 85..588 e-value: 6.1E-96 score: 322.0
IPR027413	GroEL-like equatorial domain superfamily	GENE3D	1.10.560.10		coord: 68..585 e-value: 1.9E-214 score: 714.8
IPR027413	GroEL-like equatorial domain superfamily	SUPERFAMILY	48592	GroEL equatorial domain-like	coord: 69..584
IPR018370	Chaperonin Cpn60, conserved site	PROSITE	PS00296	CHAPERONINS_CPN60	coord: 466..477

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G009050.1	CmaCh02G009050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042026	protein refolding
biological_process	GO:0006457	protein folding
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity