CmaCh02G008920 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G008920
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionProtein of unknown function, DUF584
LocationCma_Chr02: 5295342 .. 5295842 (+)
RNA-Seq ExpressionCmaCh02G008920
SyntenyCmaCh02G008920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCCGGAAAAAGCTGTTACGGCCGCTCCAACTACCGTTTCCTTTCCGGCGATATCTCCGGCCACCACCACTCCTTCACTTCCGACTTACCGTTCGAACTCAACGAATCGGACATCTACAACTCCGGTAGTTTGATATCGCCGGAGATCCGGCGATCTCCGATCCCGGCGAAGCGAATCTCGAAAAAACCGTCGTCGAATCCAGTGGAGTTACGCGGTGGTGCTTCGTCGCTGCCGGTGAATATCCCGGACTGGTCGAAGATTCTAAAGGAGGAGTACAGAGAGAAGCGGAGTGTTGAATACGACGAGGATATGGAGGAAGACGAGGACGATTGGGAGGAAATGAGAGTGCCGCCTCACGAGTTTTTGGCGAGGCAAATGGCGAGGACGAGGACGGCGTCGTTTTCGGTGCACGAAGGAATTGGAAGGACGTTGAAAGGGAGAGATCTGAGTAGGGTGAGAAATGCAATATGGGAAAAAATTGGGTTCGAGGATTGA

mRNA sequence

ATGGCGTCCGGAAAAAGCTGTTACGGCCGCTCCAACTACCGTTTCCTTTCCGGCGATATCTCCGGCCACCACCACTCCTTCACTTCCGACTTACCGTTCGAACTCAACGAATCGGACATCTACAACTCCGGTAGTTTGATATCGCCGGAGATCCGGCGATCTCCGATCCCGGCGAAGCGAATCTCGAAAAAACCGTCGTCGAATCCAGTGGAGTTACGCGGTGGTGCTTCGTCGCTGCCGGTGAATATCCCGGACTGGTCGAAGATTCTAAAGGAGGAGTACAGAGAGAAGCGGAGTGTTGAATACGACGAGGATATGGAGGAAGACGAGGACGATTGGGAGGAAATGAGAGTGCCGCCTCACGAGTTTTTGGCGAGGCAAATGGCGAGGACGAGGACGGCGTCGTTTTCGGTGCACGAAGGAATTGGAAGGACGTTGAAAGGGAGAGATCTGAGTAGGGTGAGAAATGCAATATGGGAAAAAATTGGGTTCGAGGATTGA

Coding sequence (CDS)

ATGGCGTCCGGAAAAAGCTGTTACGGCCGCTCCAACTACCGTTTCCTTTCCGGCGATATCTCCGGCCACCACCACTCCTTCACTTCCGACTTACCGTTCGAACTCAACGAATCGGACATCTACAACTCCGGTAGTTTGATATCGCCGGAGATCCGGCGATCTCCGATCCCGGCGAAGCGAATCTCGAAAAAACCGTCGTCGAATCCAGTGGAGTTACGCGGTGGTGCTTCGTCGCTGCCGGTGAATATCCCGGACTGGTCGAAGATTCTAAAGGAGGAGTACAGAGAGAAGCGGAGTGTTGAATACGACGAGGATATGGAGGAAGACGAGGACGATTGGGAGGAAATGAGAGTGCCGCCTCACGAGTTTTTGGCGAGGCAAATGGCGAGGACGAGGACGGCGTCGTTTTCGGTGCACGAAGGAATTGGAAGGACGTTGAAAGGGAGAGATCTGAGTAGGGTGAGAAATGCAATATGGGAAAAAATTGGGTTCGAGGATTGA

Protein sequence

MASGKSCYGRSNYRFLSGDISGHHHSFTSDLPFELNESDIYNSGSLISPEIRRSPIPAKRISKKPSSNPVELRGGASSLPVNIPDWSKILKEEYREKRSVEYDEDMEEDEDDWEEMRVPPHEFLARQMARTRTASFSVHEGIGRTLKGRDLSRVRNAIWEKIGFED
Homology
BLAST of CmaCh02G008920 vs. TAIR 10
Match: AT5G60680.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 145.6 bits (366), Expect = 3.6e-35
Identity = 90/171 (52.63%), Postives = 115/171 (67.25%), Query Frame = 0

Query: 1   MASGKSCYGRSNYRFLSGDISGHHHSFT-SDLPFELNESDIYNSGSLISPEIRRSPIPAK 60
           MA+GKS Y R +YRFL  D   +   FT SD   E +ESD++N     SP+  R    + 
Sbjct: 1   MATGKSYYARPSYRFLGTDQPSY---FTASDSGLEFDESDLFNPIHSDSPDFCRKISSSV 60

Query: 61  RISKKPSSNP--VELRGGASSLPVNIPDWSKILKEEYRE--KRSVEYDEDMEEDEDDWEE 120
           R  KK S+ P        ASSLPVN+PDWSKIL+ EYR+  +RS+E ++D ++D +D  +
Sbjct: 61  RSGKKSSNRPSAASSAAAASSLPVNVPDWSKILRGEYRDNRRRSIEDNDDDDDDNEDGGD 120

Query: 121 MRVPPHEFLARQMARTRTASFSVHEGIGRTLKGRDLSRVRNAIWEKIGFED 167
             +PPHEFL    A+TR ASFSVHEG+GRTLKGRDLSRVRNAI+EK GF+D
Sbjct: 121 W-LPPHEFL----AKTRMASFSVHEGVGRTLKGRDLSRVRNAIFEKFGFQD 163

BLAST of CmaCh02G008920 vs. TAIR 10
Match: AT3G45210.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-28
Identity = 84/165 (50.91%), Postives = 105/165 (63.64%), Query Frame = 0

Query: 2   ASGKSCYGRSNYRFLSGDISGHHHSFTSDLPFELNESDIYNSGSLISPEIRRSPIPAKRI 61
           A+ KS Y R ++RFL  D     ++ T D  FE +ESD+Y++ S  SPE RR  I + R 
Sbjct: 4   ATRKSYYQRPSHRFLPTD---RTYNVTGDSEFEFDESDLYSNRS-DSPEFRRKLITSNR- 63

Query: 62  SKKPSSNPVELRGGASSLPVNIPDWSKILKEEYREKRSVEYDEDMEEDEDDWEEMRVPPH 121
             K S   V     ASSLP+N+ +WSKIL +E R  +S+E D       DD  E ++PPH
Sbjct: 64  --KSSPATVTTTTVASSLPMNVQNWSKILGKENR--KSIEND-------DDGGEGKLPPH 123

Query: 122 EFLARQMARTRTASFSVHEGIGRTLKGRDLSRVRNAIWEKIGFED 167
           E+L    A+TR ASFSVHEGIGRTLKGRD+SRVRNAI EK GF D
Sbjct: 124 EYL----AKTRMASFSVHEGIGRTLKGRDMSRVRNAILEKTGFLD 148

BLAST of CmaCh02G008920 vs. TAIR 10
Match: AT2G28400.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-26
Identity = 81/174 (46.55%), Postives = 106/174 (60.92%), Query Frame = 0

Query: 1   MASGKSCYGRSNYRFLSGDISGHHHSFTSDLPFELNESDIYNSGSLISPEIRRSPIPAKR 60
           MA+ K  Y R ++RF + D    H + TSD  FEL+E D++N+GS  S     S +    
Sbjct: 1   MATSKCYYPRPSHRFFTTD---QHVTATSD--FELDEWDLFNTGSDSSSSFSFSDL---T 60

Query: 61  ISKKPSSNPVELRGG------ASSLPVNIPDWSKILKEEYREKRSVEYDEDMEEDEDDWE 120
           I+   +    ++ GG      ASSLPVN+PDWSKIL +E R +R +  +E+++ DE    
Sbjct: 61  ITSGRTGTNRQIHGGSDSGKAASSLPVNVPDWSKILGDESRRQRKISNEEEVDGDEILCG 120

Query: 121 E--MRVPPHEFLARQMARTRTASFSVHEGIGRTLKGRDLSRVRNAIWEKIGFED 167
           E   RVPPHE LA +    R ASFSVHEG GRTLKGRDLSRVRN I++  G ED
Sbjct: 121 EGTRRVPPHELLANR----RMASFSVHEGAGRTLKGRDLSRVRNTIFKIRGIED 162

BLAST of CmaCh02G008920 vs. TAIR 10
Match: AT5G03230.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-25
Identity = 75/146 (51.37%), Postives = 94/146 (64.38%), Query Frame = 0

Query: 33  FELNESDIYNSGSLISP---EIRRSPIPAKRISKKP-----SSNPVELRGGASSLPVNIP 92
           FE +ESDI+N G    P   + +RS I   R+ +KP     S N    + G  SLPVNIP
Sbjct: 28  FEFDESDIHNLGDHQLPNSFDAKRS-ISISRLRRKPTKTGDSGNREITKTG--SLPVNIP 87

Query: 93  DWSKILKEEYREKRSVEYD-EDMEEDEDDWEE---MRVPPHEFLARQMARTRTASFSVHE 152
           DWSKILK EYR     + D +D +ED+DD  +     +PPHE+LAR+    R +SF+VHE
Sbjct: 88  DWSKILKSEYRGHAIPDDDSDDDDEDDDDSNDGGRRMIPPHEYLARR----RGSSFTVHE 147

Query: 153 GIGRTLKGRDLSRVRNAIWEKIGFED 167
           GIG T KGRDL R+RNAIWEKIGF+D
Sbjct: 148 GIGGTAKGRDLRRLRNAIWEKIGFQD 166

BLAST of CmaCh02G008920 vs. TAIR 10
Match: AT4G04630.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-20
Identity = 59/144 (40.97%), Postives = 87/144 (60.42%), Query Frame = 0

Query: 34  ELNESDIYN---SGSLISPEIRRSPIPAKRI--SKKPSSNPVELRGG-------ASSLPV 93
           E  E D+++    G   SPE++   IP      S   SS+P  +R          SS P+
Sbjct: 26  EFQEEDVWSVLREGETSSPEMK---IPKSHFSSSSSSSSSPWNIRRSKEVSGVKQSSAPM 85

Query: 94  NIPDWSKILKEEYREKRSVE-YDEDMEEDEDDWEEMRVPPHEFLARQMARTRTASFSVHE 153
           N+PDWSK+  +    +RS   +    ++D++D +   VPPHE++AR++ART+ +SFS+ E
Sbjct: 86  NVPDWSKVYGDSKSNRRSSHLHSHAADDDDEDDDGCMVPPHEWVARKLARTQISSFSMCE 145

Query: 154 GIGRTLKGRDLSRVRNAIWEKIGF 165
           G+GRTLKGRDLS+VRNA+  K GF
Sbjct: 146 GVGRTLKGRDLSKVRNAVLSKTGF 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT5G60680.13.6e-3552.63Protein of unknown function, DUF584 [more]
AT3G45210.11.5e-2850.91Protein of unknown function, DUF584 [more]
AT2G28400.13.0e-2646.55Protein of unknown function, DUF584 [more]
AT5G03230.12.0e-2551.37Protein of unknown function, DUF584 [more]
AT4G04630.11.5e-2040.97Protein of unknown function, DUF584 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007608Senescence regulator S40PFAMPF04520Senescence_regcoord: 52..166
e-value: 1.8E-39
score: 136.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..76
NoneNo IPR availablePANTHERPTHR46525:SF2EMB|CAB72159.1coord: 1..166
NoneNo IPR availablePANTHERPTHR46525EMB|CAB72159.1coord: 1..166

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G008920.1CmaCh02G008920.1mRNA