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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. AGCTTCCACGTTCTTCCCCGTCTCTCTTCCACTCTTGCTCCGTTCTTCTTCCGACCATCTTCCAGTAAGCGAGATGCAGAGACTCTTTGCTGCAAGGACTGTTGCATATGCTTCGATTTTTAGGAAGCAGAGGCATTCTGCTTCATTCTCTTCTGCTCTGCTTTTTGATGATACTCAACTTCAGGTCTTTCTCTCTTGTTTTATGATGATGATGAGCTTTCAGTATGATTTGTTTGGGAGTTGATGATTTCGTTGTCGATGGCCTTCTATTTTTGGATTTTTATTGTTTGAATTAGACTGTGGAATCTTCAGTGTAGCTTTGGTTGATTTGTGATGTGAATTTATGACCATGAAGCTCGGATTGAGAATTGTTTGTTTCATTTGTGGATGGTTTGCTTTCGATTGTCTTTGGTTACAAGTTATGTATAACCTAGTTTGCACCAGTAGAATGATGAAAGTGTTTGTTACTGATTTTCTAAAAGAATTTATTAAATTAATTGCAGTTCAAAGAAAGTGTTAAACAATTTGCTCAAGATAACATTGCTCCCCATGCTGCAAAAATTGATCAAATGAACTCTTTCCCGCAGGTTAGTTGAAAGTCTCTCTCCCCCTATATATTTACTTCATATGTTTTTTCTTTTCTTTTTTAATTTACAAATGTGAGTTTCTTTATGATTTGGCTAAAATGTACCTTATTGTAGGATGTTAACTTATGGAAGCTCATGGGGGACTTCAATCTCCATGGAATTACTGCACCTGGTAAAGCGTGAGAAATCGTTTTTGATGCTTCCCTCATTCACTGTTATTTGGAGTTATTCAATCTTAATAATTATATTCATATCCTCTTTATTCATGAATTTTCATCTTTTCCGCTTCTAGTTATTATCCATAAAAGTTTATTTAATTATACTCTTATTGTACATTATGAGTGTCCTGATGGAGGTAAATCTAATTGAGATAATTGATACATAGTAAGTGCCTTCTTAAATTAGATGAATATTGAGATGGTTGCATATATTTTGCTATAGTACTGTTTCTCTCATTCTTTCAAGATATTTTAAAACTAAGCTATTGATTGTCTTGTAGAGGAATATGGAGGACTTGGTCTTGGTTACTTATATCACTGTATAGCAATGGAAGAAATAAGTCGTGCTTCTGGGTCTGTTGCCCTCTCCTTCGGTGCACATTCTAACCTGTGCATCAATCAGCTGGTAAATTGAAGTGATTAAATATTGTGTTAGTGACGTCATAGTAGGATTATATGTCGTAGTGAAATCATTAAGTGCAGTATGGACTACATAAGTTATGTTAACCTCGTATTTGTTGATTTTTCAGGTGAGGAATGGAAGCCCAGCTCAAAAAGAGAAGTACTTGCCTAAGGTTTTACTCCATGCTATAATAATTACCAAACTGCACATAACAATGTCATGCTCGCTTCATTTACTCTGATGCCTAGTCATCTGGAAGTGTCATACCGGAATTTTTTTGTTTTTTTTTTTTTTTTTCATTTTTAATATAATTCCTGAAGTAAATTCTATCTTCATGCTTTCCTTTGCTCTATTGCCTTCTCATTGCTCCTTTCTTTTCTATTAATGTAATTCTTTTTGGCTACTAACTTAACTATATCTTTGTTAAGCTTATTAAAGGGGAGCATGTAGGAGCTCTTGCAATGAGTGAACCCAATGGTAAGTTTAATGAACTTTTGTTTTTCATGTGTGCATGCAAAGGTAGATCCTTTTAAGAACTAAAAATGTTTTCATCCTTGGATGATGCATTTCCTATTTTCAGCTGGCTCGGATGTTGTGAGCATGAAATGCAGAGCTGACCGAGTGGATGGTGGATATATCATTAATGGAAACAAGATGTGGTGTACTAATGGTCCTACAGCTCAAACATTGGTAGTTTTTGTTGCAATTTTTCTAAGCATGTTAAAAAAATTCACCTCTATTTATTGGTTAATACTTGTGTTGCCTAAGAAAAGAGATACCGATAGATAATATAGCATTCGATTCATTTATAACTGTAGAATTATTAAAAACAAAACTCCAAAGAAAAATCTTTAAGAACACTGAAATAGTTAGTCATGTTGGATGTGTGATATTTCATCAAAATTACATGAACTTTTTTCTTTGTTGCTATATGGTGAAAACTTTTCTTTCTTTCCTTTTTTTTTATTATTTTTTTAAAATTCAGGGATCTATTATGGTTTATGAACAACCTTGAACTTGATCACTTTCGTGTTGTGCATATATTAAATGTATTTGGCTATATATGTATTAAATGTATTTGGTTTATATGGAAACCTTGTTTTGATCGGTCATAAGCTTGTTGAAAAGAGCTGTCTTAAGCTTAATTTTTTGTTGTCATAGTATGTTAGTATGAATCACCTACATTTTCAGAGAAATTGGGACCCTTAACTAAAATTACCCTTGCAAAAGCTGATTCAACGGGAATCAATAAACTGAAAGGCCATTTAAGTAAATAGAAATAAAAGAAGAATTTCTTGACACATTTTTCTCCTTTGATATTGTAGAATTCATAATTGATGTTATCGACCGTGCCGTGGGTTTTATTTATTTTATGTATTTTCATGTAATGTAGGAGGGAATAAACATGTTGGAGTAACATTTTATAGGTTCAGGTTACATGTAGTAGTTTGTATTCCACCTTAAAATCTTAAAACCACGTAGGATGGTCAAATTGTGGTTGTTGAAACATTTTATTCTTGCTTATTTCATTGACTCGTAGCTGATATACACAATGTTATCAGGTTGTTTATGCAAAAACAGACGCAAATGCTGGCTCAAAGGGAATTACAGCGTTTATCATTGAAAAAGGAATGCCCGGGTACTTGAATAATCTTTGGTCTGGTTAATGATAGGTTGAATTTGCAAGTGAGAGTTTTCTGTTCCAGTTCTATAGCATGCAGTCGTGTAGCACCCTAGCATATATTTTTTTTAACTGTATTCCTAAACTAACCCTATGCTGCTGATTCCAACATCATTTAGAAACTATGAATGTTCTTATTCCTTCATTCTTATATTGGCTGCTTCTACGTTTCTCAGATTCAGTACTGCCCAGAAATTAGACAAACTTGGCATGCGAGGGAGTGATACGTGAGTCTACTGTGGTTTGAAATTCAAGTTTCTAAAATTAGAGCATGCAATCTTCTTGCCCCTTCCACTAATGTTGGTGATGGTTCGAACAGATGTGAGCTTGTCTTTGAAAATTGCTTTGTTCCTGAAGAAAATGTACTTGGACAAGAAGGAAAAGGTATTCTGCTGGTGTACTACTGTTCATTCATGCATCCAGTAAATAGTTATATTTATTAATATTTTATTTCTGTAAAATCATTTCAATGAGGTTGGATGCGCAATTGATGGGGATGTTACTTAATGGCAGATTTCAACACAGGGTTCTAATTTATGGTGGTGGCCTAATTTTGATCAATCTATTTTCTTTTCTCAGTTAAAAGAATCACAACATTCCAAAAAAGAAGAGAAAATATTATGTGATCTTATTGTTAGCAATCTTTGGACCTAGGCATTCATAATTGGTGTGTAGGTGACGGTAGTTCTCTGACCAAATGTTGCGACGGCTAAATGTGATGTCTCCAAGGGATAATAATATCTAAAATGCTGACATTTCTAGCTCCAATGGCATCTCTTTATGATAATGTTCCAATTGTTAAGATTTATACCTTTTGAATATTGATGTAATAATAGATAGAAAAGATACGATGAGAATAAGGAATTTAATGTGCTGATATTTTTGCTTTAGTACCAGGCTCTTTCATGTTTTGTTTGGGTTTAATGTAATAGAAGCGAAAAAGCTTTGGTGTTGTCATGCCAATTACTTGCTATGATACATATAAATGTAAATAGTAACTACCTTGTCTTGTTGCAGCCTGATTGGAAGAGAACCAAACTATTGCCATCATCATGTTTGTCATTATTTTAGTAGTGTAATGTACTATGTTTTATTTCAGGAGTTTATGTTATGATGTCTGGGTTAGATTTGGAGAGGCTTGTTTTGGCTGCTGGTCCCCTTGGTCTTATGCAGGCATGCCTGGATGTTGTTCTTCCTTACGTTAAACAAAGAGAGCAGTTTGGTCGTCCAATTGGGGAATTCCAGTTTATCCAGGTTCTATCACTGTGACTATCTTACCATACTTGCATCTGACGTTTCCTCTAAAATGACTCAATTAATCTGAAATTGCAGGGAAAACTTGCCGATATGTATACGTCTTTGCAATCATCAAGGTGAGAGATTTTGGAGTAATTATGTATTATTTCTGATTTATGATTTTTGTTCTTTTGTCATGTTGACTCTCTCTGTCCCTCTCCAGGGCCTACGTTTATTCTGTTGCGAGGGACTGTGACAGTGGAAAAGTAGATCCCAAGGTTTGTAGGGCATCTTAAACCTTCTTTTTCCCCTTTTTTCCGCTTGAATCTTTTGGTTTCTCTATTAATATATAACATGTTCCTCTGATGTTTAGTTAAATAGAGTACTTTAAGTTTTGATCAACCCGAGGTGCTACTTTAGATCTTTCACCACTTCCCTAATGAATATTATATAAGCACATGTTCGTAGCAGCTATGCTTTTAACCCATTATTTCTTATTCCATGGCCATGGAAACGCTTGGTCAATAAATTCCTTCAAGTATTCACCCCGTGTGGTTTTGTGTCCAGGATTGTGCTGGAGTAATATTATCTGCAGCTGAAAGGGCAACACAAGTTGCTCTGCAGGTAAAAGTTGCATTCATTAAACATTTTTTTTCAATCGTTTATCGCGCAGAACTATCAGAAGCACGTTTCTTTCAGAAGCTTTTGTTTCAGTCAAACTTCGAAAGGAATATTTGTTTTAAATGCCAGTCTTATCTATTTTCCAATAGAACCATATAACTTCTAGGTTCTATGCCATAGCAAGAACTTGTGAAAGAAGTTACACCAACTCCAACTTGATGGGCCAATACTTGTCAAACGATTTCGAGATTGAATCGATTTAACTGATCAAAATGACTTGATTAAATATGCCATCCTCATATTCACAGTTATTTTAGCACATTGTGTGCGTAACATTACCATGTGTAAATCGTTCATGTTCTTGTTCAATCTTACAGGCCATACAATGTTTAGGAGGCAACGGGTATGTAAACGAATACACAACCGGTCGACTACTAAGAGATGCGAAACTATATGAAATAGGTGCAGGAACTAGTGAAGTGAGAAGAATGATCATCGGTCGCTCGCTGTTCAAAGAACAATAGGACAACTTTCACTCGTCGGATAGCCCACGATCAAAGTCTATACTCATGAGCAGCCCCCTGTGCAGATTTTGAAGAAGCAAAGGTGATTGAGATCTTTATCCACAATGTGTAATTTTAAGGAAACATTCACATTTATCATAAATAATTGTTGCCTTTGTTTGAAATAAATTAAGTTGCCTCTGTTCTACCTATCAAGTTATTTAAATTCTAATGATCTCTGTTTCTACTGAGTTCAAAATATTCAATATCATTCCATACCATTCCAC mRNA sequence AGCTTCCACGTTCTTCCCCGTCTCTCTTCCACTCTTGCTCCGTTCTTCTTCCGACCATCTTCCAGTAAGCGAGATGCAGAGACTCTTTGCTGCAAGGACTGTTGCATATGCTTCGATTTTTAGGAAGCAGAGGCATTCTGCTTCATTCTCTTCTGCTCTGCTTTTTGATGATACTCAACTTCAGTTCAAAGAAAGTGTTAAACAATTTGCTCAAGATAACATTGCTCCCCATGCTGCAAAAATTGATCAAATGAACTCTTTCCCGCAGGATGTTAACTTATGGAAGCTCATGGGGGACTTCAATCTCCATGGAATTACTGCACCTGAGGAATATGGAGGACTTGGTCTTGGTTACTTATATCACTGTATAGCAATGGAAGAAATAAGTCGTGCTTCTGGGTCTGTTGCCCTCTCCTTCGGTGCACATTCTAACCTGTGCATCAATCAGCTGGTGAGGAATGGAAGCCCAGCTCAAAAAGAGAAGTACTTGCCTAAGCTTATTAAAGGGGAGCATGTAGGAGCTCTTGCAATGAGTGAACCCAATGCTGGCTCGGATGTTGTGAGCATGAAATGCAGAGCTGACCGAGTGGATGGTGGATATATCATTAATGGAAACAAGATGTGGTGTACTAATGGTCCTACAGCTCAAACATTGGTTGTTTATGCAAAAACAGACGCAAATGCTGGCTCAAAGGGAATTACAGCGTTTATCATTGAAAAAGGAATGCCCGGATTCAGTACTGCCCAGAAATTAGACAAACTTGGCATGCGAGGGAGTGATACATGTGAGCTTGTCTTTGAAAATTGCTTTGTTCCTGAAGAAAATGTACTTGGACAAGAAGGAAAAGGAGTTTATGTTATGATGTCTGGGTTAGATTTGGAGAGGCTTGTTTTGGCTGCTGGTCCCCTTGGTCTTATGCAGGCATGCCTGGATGTTGTTCTTCCTTACGTTAAACAAAGAGAGCAGTTTGGTCGTCCAATTGGGGAATTCCAGTTTATCCAGGGAAAACTTGCCGATATGTATACGTCTTTGCAATCATCAAGGGCCTACGTTTATTCTGTTGCGAGGGACTGTGACAGTGGAAAAGTAGATCCCAAGGATTGTGCTGGAGTAATATTATCTGCAGCTGAAAGGGCAACACAAGTTGCTCTGCAGGCCATACAATGTTTAGGAGGCAACGGGTATGTAAACGAATACACAACCGGTCGACTACTAAGAGATGCGAAACTATATGAAATAGGTGCAGGAACTAGTGAAGTGAGAAGAATGATCATCGGTCGCTCGCTGTTCAAAGAACAATAGGACAACTTTCACTCGTCGGATAGCCCACGATCAAAGTCTATACTCATGAGCAGCCCCCTGTGCAGATTTTGAAGAAGCAAAGGTGATTGAGATCTTTATCCACAATGTGTAATTTTAAGGAAACATTCACATTTATCATAAATAATTGTTGCCTTTGTTTGAAATAAATTAAGTTGCCTCTGTTCTACCTATCAAGTTATTTAAATTCTAATGATCTCTGTTTCTACTGAGTTCAAAATATTCAATATCATTCCATACCATTCCAC Coding sequence (CDS) ATGCAGAGACTCTTTGCTGCAAGGACTGTTGCATATGCTTCGATTTTTAGGAAGCAGAGGCATTCTGCTTCATTCTCTTCTGCTCTGCTTTTTGATGATACTCAACTTCAGTTCAAAGAAAGTGTTAAACAATTTGCTCAAGATAACATTGCTCCCCATGCTGCAAAAATTGATCAAATGAACTCTTTCCCGCAGGATGTTAACTTATGGAAGCTCATGGGGGACTTCAATCTCCATGGAATTACTGCACCTGAGGAATATGGAGGACTTGGTCTTGGTTACTTATATCACTGTATAGCAATGGAAGAAATAAGTCGTGCTTCTGGGTCTGTTGCCCTCTCCTTCGGTGCACATTCTAACCTGTGCATCAATCAGCTGGTGAGGAATGGAAGCCCAGCTCAAAAAGAGAAGTACTTGCCTAAGCTTATTAAAGGGGAGCATGTAGGAGCTCTTGCAATGAGTGAACCCAATGCTGGCTCGGATGTTGTGAGCATGAAATGCAGAGCTGACCGAGTGGATGGTGGATATATCATTAATGGAAACAAGATGTGGTGTACTAATGGTCCTACAGCTCAAACATTGGTTGTTTATGCAAAAACAGACGCAAATGCTGGCTCAAAGGGAATTACAGCGTTTATCATTGAAAAAGGAATGCCCGGATTCAGTACTGCCCAGAAATTAGACAAACTTGGCATGCGAGGGAGTGATACATGTGAGCTTGTCTTTGAAAATTGCTTTGTTCCTGAAGAAAATGTACTTGGACAAGAAGGAAAAGGAGTTTATGTTATGATGTCTGGGTTAGATTTGGAGAGGCTTGTTTTGGCTGCTGGTCCCCTTGGTCTTATGCAGGCATGCCTGGATGTTGTTCTTCCTTACGTTAAACAAAGAGAGCAGTTTGGTCGTCCAATTGGGGAATTCCAGTTTATCCAGGGAAAACTTGCCGATATGTATACGTCTTTGCAATCATCAAGGGCCTACGTTTATTCTGTTGCGAGGGACTGTGACAGTGGAAAAGTAGATCCCAAGGATTGTGCTGGAGTAATATTATCTGCAGCTGAAAGGGCAACACAAGTTGCTCTGCAGGCCATACAATGTTTAGGAGGCAACGGGTATGTAAACGAATACACAACCGGTCGACTACTAAGAGATGCGAAACTATATGAAATAGGTGCAGGAACTAGTGAAGTGAGAAGAATGATCATCGGTCGCTCGCTGTTCAAAGAACAATAG Protein sequence MQRLFAARTVAYASIFRKQRHSASFSSALLFDDTQLQFKESVKQFAQDNIAPHAAKIDQMNSFPQDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSFGAHSNLCINQLVRNGSPAQKEKYLPKLIKGEHVGALAMSEPNAGSDVVSMKCRADRVDGGYIINGNKMWCTNGPTAQTLVVYAKTDANAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVKQREQFGRPIGEFQFIQGKLADMYTSLQSSRAYVYSVARDCDSGKVDPKDCAGVILSAAERATQVALQAIQCLGGNGYVNEYTTGRLLRDAKLYEIGAGTSEVRRMIIGRSLFKEQ
Homology
BLAST of CmaCh02G008800 vs. ExPASy Swiss-Prot
Match: Q9SWG0 (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=IVD PE=1 SV=2) HSP 1 Score: 723.0 bits (1865), Expect = 1.9e-207 Identity = 347/409 (84.84%), Postives = 385/409 (94.13%), Query Frame = 0
Query: 1 MQRLFAARTVAYASIFRKQRHSASFSSALLFDDTQLQFKESVKQFAQDNIAPHAAKIDQM 60
MQR F+AR++ ++ ++R +S SS+LLFDDTQLQFKESV +FAQDNIAPHA +ID+
Sbjct: 1 MQRFFSARSILGYAVKTRRRSFSSRSSSLLFDDTQLQFKESVSKFAQDNIAPHAERIDKT 60
Query: 61 NSFPQDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSFGAHSN 120
NSFP+DVNLWKLMG+FNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALS+GAHSN
Sbjct: 61 NSFPKDVNLWKLMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHSN 120
Query: 121 LCINQLVRNGSPAQKEKYLPKLIKGEHVGALAMSEPNAGSDVVSMKCRADRVDGGYIING 180
LCINQLVRNG+ AQKEKYLPKLI GEHVGALAMSEPNAGSDVV MKC+A++VDGGYI+NG
Sbjct: 121 LCINQLVRNGTAAQKEKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAEKVDGGYILNG 180
Query: 181 NKMWCTNGPTAQTLVVYAKTDANAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCEL 240
NKMWCTNGP+A+TLVVYAKTD AGSKGITAFIIEKGM GFSTAQKLDKLGMRGSDTCEL
Sbjct: 181 NKMWCTNGPSAETLVVYAKTDTKAGSKGITAFIIEKGMTGFSTAQKLDKLGMRGSDTCEL 240
Query: 241 VFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVKQREQFG 300
VFENCFVPEEN+L +EGKGVYV+MSGLDLERLVLAAGPLG+MQACLD VLPY++QREQFG
Sbjct: 241 VFENCFVPEENILDKEGKGVYVLMSGLDLERLVLAAGPLGIMQACLDNVLPYIRQREQFG 300
Query: 301 RPIGEFQFIQGKLADMYTSLQSSRAYVYSVARDCDSGKVDPKDCAGVILSAAERATQVAL 360
RP+GEFQFIQGK+ADMYT+LQSSR+YVYSVARDCD+GKVDPKDCAG IL AAERATQVAL
Sbjct: 301 RPVGEFQFIQGKVADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGTILCAAERATQVAL 360
Query: 361 QAIQCLGGNGYVNEYTTGRLLRDAKLYEIGAGTSEVRRMIIGRSLFKEQ 410
QAIQCLGGNGY+NEY TGRLLRDAKLYEIGAGTSE+RR++IGR LFKE+
Sbjct: 361 QAIQCLGGNGYINEYATGRLLRDAKLYEIGAGTSEIRRIVIGRELFKEE 409
BLAST of CmaCh02G008800 vs. ExPASy Swiss-Prot
Match: Q9FS87 (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Solanum tuberosum OX=4113 GN=IVD PE=1 SV=2) HSP 1 Score: 710.7 bits (1833), Expect = 9.7e-204 Identity = 348/413 (84.26%), Postives = 382/413 (92.49%), Query Frame = 0
Query: 1 MQRLFAARTVAYASIFRKQRHS----ASFSSALLFDDTQLQFKESVKQFAQDNIAPHAAK 60
M +LF AR+V +++FR + H A+FS++LLFDDTQ QFKESV QFAQ+NIAPHA K
Sbjct: 1 MHKLFVARSVK-SALFRIKNHQKPQFAAFSTSLLFDDTQKQFKESVAQFAQENIAPHAEK 60
Query: 61 IDQMNSFPQDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSFG 120
ID+ N FPQDVNLWKLMG+FNL GIT PEEYGGLGLGYLYHCIAMEEISRASGSV LS+G
Sbjct: 61 IDRTNYFPQDVNLWKLMGNFNLLGITVPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYG 120
Query: 121 AHSNLCINQLVRNGSPAQKEKYLPKLIKGEHVGALAMSEPNAGSDVVSMKCRADRVDGGY 180
AH+NLCINQLVRNG+ QK+KYLPKLI GEHVGALAMSEPNAGSDVVSMKC+ADRV+GGY
Sbjct: 121 AHTNLCINQLVRNGTHEQKQKYLPKLISGEHVGALAMSEPNAGSDVVSMKCKADRVEGGY 180
Query: 181 IINGNKMWCTNGPTAQTLVVYAKTDANAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD 240
++NGNKMWCTNGPTAQTLVVYAKTD AGSKGITAFIIEKGM GFSTAQKLDKLGMRGSD
Sbjct: 181 VLNGNKMWCTNGPTAQTLVVYAKTDVTAGSKGITAFIIEKGMTGFSTAQKLDKLGMRGSD 240
Query: 241 TCELVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVKQR 300
TCELVFENCFVPEENVLGQ G+GVYV+MSGLDLERLVLA+GP+G+MQACLDVVLPYVKQR
Sbjct: 241 TCELVFENCFVPEENVLGQVGRGVYVLMSGLDLERLVLASGPVGIMQACLDVVLPYVKQR 300
Query: 301 EQFGRPIGEFQFIQGKLADMYTSLQSSRAYVYSVARDCDSGKVDPKDCAGVILSAAERAT 360
EQFGRPIGEFQF+QGK+ADMYTS+QSSR+Y+YSVAR+CDSG ++ KDCAGVILSAAERAT
Sbjct: 301 EQFGRPIGEFQFVQGKVADMYTSMQSSRSYLYSVARECDSGTINTKDCAGVILSAAERAT 360
Query: 361 QVALQAIQCLGGNGYVNEYTTGRLLRDAKLYEIGAGTSEVRRMIIGRSLFKEQ 410
QVALQAIQCLGGNGYVNEY TGR LRDAKLYEIGAGTSE+RRMIIGR LFKEQ
Sbjct: 361 QVALQAIQCLGGNGYVNEYPTGRFLRDAKLYEIGAGTSEIRRMIIGRELFKEQ 412
BLAST of CmaCh02G008800 vs. ExPASy Swiss-Prot
Match: Q75IM9 (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0125500 PE=2 SV=2) HSP 1 Score: 704.9 bits (1818), Expect = 5.3e-202 Identity = 341/390 (87.44%), Postives = 368/390 (94.36%), Query Frame = 0
Query: 20 RHSASFSSALLFDDTQLQFKESVKQFAQDNIAPHAAKIDQMNSFPQDVNLWKLMGDFNLH 79
R S +S+LLFDDTQ QFKESV +FAQ+ IAPHAA ID N FP+DVNLWKLMGDFNLH
Sbjct: 20 RRLYSSASSLLFDDTQEQFKESVHKFAQETIAPHAAAIDASNHFPKDVNLWKLMGDFNLH 79
Query: 80 GITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSFGAHSNLCINQLVRNGSPAQKEKYL 139
G+TAPEEYGG+GLGY+YHCIAMEEISRASGSV LS+GAHSNLCINQLVR+GSPAQK KYL
Sbjct: 80 GLTAPEEYGGMGLGYMYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKLKYL 139
Query: 140 PKLIKGEHVGALAMSEPNAGSDVVSMKCRADRVDGGYIINGNKMWCTNGPTAQTLVVYAK 199
PKLI GEHVGALAMSEPN+GSDVVSMKC+A++VDGGY+INGNKMWCTNGP+AQTLVVYAK
Sbjct: 140 PKLISGEHVGALAMSEPNSGSDVVSMKCKAEKVDGGYVINGNKMWCTNGPSAQTLVVYAK 199
Query: 200 TDANAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKG 259
TD AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP ENVLG+EGKG
Sbjct: 200 TDIAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPHENVLGEEGKG 259
Query: 260 VYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVKQREQFGRPIGEFQFIQGKLADMYTS 319
VYVMMSGLDLERLVLAAGP+GLMQACLDV +PYV+QREQFGRPIGEFQFIQGKLADMYTS
Sbjct: 260 VYVMMSGLDLERLVLAAGPIGLMQACLDVAVPYVRQREQFGRPIGEFQFIQGKLADMYTS 319
Query: 320 LQSSRAYVYSVARDCDSGKVDPKDCAGVILSAAERATQVALQAIQCLGGNGYVNEYTTGR 379
LQSSR++VYSVARDCD+GKVD KDCAGVIL AAERATQVALQAIQCLGGNGY+NEY TGR
Sbjct: 320 LQSSRSFVYSVARDCDNGKVDRKDCAGVILFAAERATQVALQAIQCLGGNGYINEYPTGR 379
Query: 380 LLRDAKLYEIGAGTSEVRRMIIGRSLFKEQ 410
LLRDAKL+EIGAGTSE+RRMIIGR LFKE+
Sbjct: 380 LLRDAKLFEIGAGTSEIRRMIIGRELFKEE 409
BLAST of CmaCh02G008800 vs. ExPASy Swiss-Prot
Match: Q9FS88 (2-methylacyl-CoA dehydrogenase, mitochondrial OS=Solanum tuberosum OX=4113 GN=2MBCD PE=1 SV=2) HSP 1 Score: 695.7 bits (1794), Expect = 3.2e-199 Identity = 331/412 (80.34%), Postives = 376/412 (91.26%), Query Frame = 0
Query: 1 MQRLFAARTVAYA---SIFRKQRHSASFSSALLFDDTQLQFKESVKQFAQDNIAPHAAKI 60
M +LFA R+++ A S Q A+FS++LL DDTQ QFKESV +FAQ+NIAP+A KI
Sbjct: 1 MHKLFAVRSLSSAIVKSFKSLQNQQAAFSTSLLLDDTQKQFKESVAKFAQENIAPYAEKI 60
Query: 61 DQMNSFPQDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSFGA 120
D+ NSFP+++NLWKLMGDFNLHGITAPEEYGGL LGYLYHCIA+EEISRASG+VA+S+G
Sbjct: 61 DRTNSFPKEINLWKLMGDFNLHGITAPEEYGGLNLGYLYHCIALEEISRASGAVAVSYGV 120
Query: 121 HSNLCINQLVRNGSPAQKEKYLPKLIKGEHVGALAMSEPNAGSDVVSMKCRADRVDGGYI 180
SN+CINQLVRNG+P QK+KYLPKLI G+H+GALAMSEPNAGSDVVSMKCRADRVDGGY+
Sbjct: 121 QSNVCINQLVRNGTPDQKQKYLPKLISGDHIGALAMSEPNAGSDVVSMKCRADRVDGGYV 180
Query: 181 INGNKMWCTNGPTAQTLVVYAKTDANAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 240
+NGNKMWCTNGP A TL+VYAKTD AGSKGITAFIIEK MPGFSTAQKLDKLGMRGSDT
Sbjct: 181 LNGNKMWCTNGPVANTLIVYAKTDTTAGSKGITAFIIEKEMPGFSTAQKLDKLGMRGSDT 240
Query: 241 CELVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVKQRE 300
CELVFENCFVP ENVLGQEGKGVYV+MSGLDLERLVLAAGP+G+MQAC+D+V+PYV+QRE
Sbjct: 241 CELVFENCFVPNENVLGQEGKGVYVLMSGLDLERLVLAAGPVGIMQACMDIVIPYVRQRE 300
Query: 301 QFGRPIGEFQFIQGKLADMYTSLQSSRAYVYSVARDCDSGKVDPKDCAGVILSAAERATQ 360
QFGRPIGEFQ IQGKLADMYT+LQSSR+YVY+VA+DCD+GK+DPKDC+G IL AAERATQ
Sbjct: 301 QFGRPIGEFQLIQGKLADMYTALQSSRSYVYAVAKDCDNGKIDPKDCSGTILLAAERATQ 360
Query: 361 VALQAIQCLGGNGYVNEYTTGRLLRDAKLYEIGAGTSEVRRMIIGRSLFKEQ 410
VALQAIQCLGGNGY+NEY TGRLLRDAK+YEI AGTSE+RR++IGR LFK Q
Sbjct: 361 VALQAIQCLGGNGYINEYPTGRLLRDAKMYEIAAGTSEIRRLVIGRELFKHQ 412
BLAST of CmaCh02G008800 vs. ExPASy Swiss-Prot
Match: Q9JHI5 (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Ivd PE=1 SV=1) HSP 1 Score: 525.0 bits (1351), Expect = 7.5e-148 Identity = 254/375 (67.73%), Postives = 302/375 (80.53%), Query Frame = 0
Query: 32 DDTQLQFKESVKQFAQDNIAPHAAKIDQMNSFPQDVNLWKLMGDFNLHGITAPEEYGGLG 91
++ Q Q + ++ +F Q+N+AP A +IDQ N F WK +G + GITAP +YGG G
Sbjct: 44 NEEQKQLRHTISKFLQENLAPKAQEIDQTNDFKNLREFWKQLGSLGVLGITAPVQYGGSG 103
Query: 92 LGYLYHCIAMEEISRASGSVALSFGAHSNLCINQLVRNGSPAQKEKYLPKLIKGEHVGAL 151
LGYL H + MEEISRASG+V LS+GAHSNLC+NQ+VRNG+ AQKEKYLPKLI GE +GAL
Sbjct: 104 LGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNGNEAQKEKYLPKLISGEFIGAL 163
Query: 152 AMSEPNAGSDVVSMKCRADRVDGGYIINGNKMWCTNGPTAQTLVVYAKTDANA--GSKGI 211
AMSEPNAGSDVVSMK +A++ Y++NGNK W TNGP A LVVYAKTD A S+GI
Sbjct: 164 AMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADILVVYAKTDLTAVPASRGI 223
Query: 212 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLDL 271
TAFI+EKGMPGFST++KLDKLGMRGS+TCELVFE+C VP NVL QE KGVYV+MSGLDL
Sbjct: 224 TAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANVLSQESKGVYVLMSGLDL 283
Query: 272 ERLVLAAGPLGLMQACLDVVLPYVKQREQFGRPIGEFQFIQGKLADMYTSLQSSRAYVYS 331
ERLVLA GPLG+MQA LD +PY+ RE FG+ IG+FQ +QGK+ADMYT L +SR YVY+
Sbjct: 284 ERLVLAGGPLGIMQAVLDHTIPYLHVREAFGQKIGQFQLMQGKMADMYTRLMASRQYVYN 343
Query: 332 VARDCDSGKVDPKDCAGVILSAAERATQVALQAIQCLGGNGYVNEYTTGRLLRDAKLYEI 391
VA+ CD G + PKDCAGVIL AAE ATQVAL IQCLGGNGY+N++ GR LRDAKLYEI
Sbjct: 344 VAKACDEGHIIPKDCAGVILYAAECATQVALDGIQCLGGNGYINDFPMGRFLRDAKLYEI 403
Query: 392 GAGTSEVRRMIIGRS 405
GAGTSEVRR++IGR+
Sbjct: 404 GAGTSEVRRLVIGRA 418
BLAST of CmaCh02G008800 vs. TAIR 10
Match: AT3G45300.1 (isovaleryl-CoA-dehydrogenase ) HSP 1 Score: 723.0 bits (1865), Expect = 1.3e-208 Identity = 347/409 (84.84%), Postives = 385/409 (94.13%), Query Frame = 0
Query: 1 MQRLFAARTVAYASIFRKQRHSASFSSALLFDDTQLQFKESVKQFAQDNIAPHAAKIDQM 60
MQR F+AR++ ++ ++R +S SS+LLFDDTQLQFKESV +FAQDNIAPHA +ID+
Sbjct: 1 MQRFFSARSILGYAVKTRRRSFSSRSSSLLFDDTQLQFKESVSKFAQDNIAPHAERIDKT 60
Query: 61 NSFPQDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSFGAHSN 120
NSFP+DVNLWKLMG+FNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALS+GAHSN
Sbjct: 61 NSFPKDVNLWKLMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHSN 120
Query: 121 LCINQLVRNGSPAQKEKYLPKLIKGEHVGALAMSEPNAGSDVVSMKCRADRVDGGYIING 180
LCINQLVRNG+ AQKEKYLPKLI GEHVGALAMSEPNAGSDVV MKC+A++VDGGYI+NG
Sbjct: 121 LCINQLVRNGTAAQKEKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAEKVDGGYILNG 180
Query: 181 NKMWCTNGPTAQTLVVYAKTDANAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCEL 240
NKMWCTNGP+A+TLVVYAKTD AGSKGITAFIIEKGM GFSTAQKLDKLGMRGSDTCEL
Sbjct: 181 NKMWCTNGPSAETLVVYAKTDTKAGSKGITAFIIEKGMTGFSTAQKLDKLGMRGSDTCEL 240
Query: 241 VFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVKQREQFG 300
VFENCFVPEEN+L +EGKGVYV+MSGLDLERLVLAAGPLG+MQACLD VLPY++QREQFG
Sbjct: 241 VFENCFVPEENILDKEGKGVYVLMSGLDLERLVLAAGPLGIMQACLDNVLPYIRQREQFG 300
Query: 301 RPIGEFQFIQGKLADMYTSLQSSRAYVYSVARDCDSGKVDPKDCAGVILSAAERATQVAL 360
RP+GEFQFIQGK+ADMYT+LQSSR+YVYSVARDCD+GKVDPKDCAG IL AAERATQVAL
Sbjct: 301 RPVGEFQFIQGKVADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGTILCAAERATQVAL 360
Query: 361 QAIQCLGGNGYVNEYTTGRLLRDAKLYEIGAGTSEVRRMIIGRSLFKEQ 410
QAIQCLGGNGY+NEY TGRLLRDAKLYEIGAGTSE+RR++IGR LFKE+
Sbjct: 361 QAIQCLGGNGYINEYATGRLLRDAKLYEIGAGTSEIRRIVIGRELFKEE 409
BLAST of CmaCh02G008800 vs. TAIR 10
Match: AT3G51840.1 (acyl-CoA oxidase 4 ) HSP 1 Score: 161.4 bits (407), Expect = 1.6e-39 Identity = 103/368 (27.99%), Postives = 185/368 (50.27%), Query Frame = 0
Query: 39 KESVKQFAQDNIAPHAAKIDQMNSFPQDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHC 98
++ V++ + +AP + + FP ++ +G + G + + YG GL +
Sbjct: 63 RKKVRECMEKEVAPIMTEYWEKAEFP--FHITPKLGAMGVAG-GSIKGYGCPGLSITANA 122
Query: 99 IAMEEISRASGSVALSFGAHSNLCINQLVRNGSPAQKEKYLPKLIKGEHVGALAMSEPNA 158
IA EI+R S + HS+L + + GS AQKEKYLP L + V A++EP+
Sbjct: 123 IATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDN 182
Query: 159 GSDVVSMKCRADRVDGGYIINGNKMWCTNGPTAQTLVVYAKTDANAGSKGITAFIIEKGM 218
GSD + A +V+GG+ ING K W N A L+++A+ N + I FI++K
Sbjct: 183 GSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFAR---NTTTNQINGFIVKKDA 242
Query: 219 PGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSG-LDLERLVLAAG 278
PG + +K+G+R +++ +N FVP+E+ L G + S L + R+++A
Sbjct: 243 PGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL--PGVNSFQDTSKVLAVSRVMVAWQ 302
Query: 279 PLGLMQACLDVVLPYVKQREQFGRPIGEFQFIQGKLADMYTSLQSSRAYVYSVARDCDSG 338
P+G+ D+ Y+K+R+QFG P+ FQ Q KL M ++Q+ + + + ++G
Sbjct: 303 PIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETG 362
Query: 339 KVDPKDCAGVILSAAERATQVALQAIQCLGGNGYVNEYTTGRLLRDAKLYEIGAGTSEVR 398
++ P + + +A + A + LGGNG + ++ + D + GT ++
Sbjct: 363 QMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDIN 422
Query: 399 RMIIGRSL 406
++ GR +
Sbjct: 423 TLVTGREV 422
BLAST of CmaCh02G008800 vs. TAIR 10
Match: AT3G06810.1 (acyl-CoA dehydrogenase-related ) HSP 1 Score: 105.9 bits (263), Expect = 7.7e-23 Identity = 94/339 (27.73%), Postives = 146/339 (43.07%), Query Frame = 0
Query: 77 NLHGITAPEEYG-GL-GLGYLYHCIAMEEISRASGSVALSFGAHSNLCINQLVRNGSPAQ 136
NL G + + +G GL L Y Y C M A + GA + ++R G+ Q
Sbjct: 481 NLSGKSFDQLFGEGLTNLEYGYLCEIMGRSVWA--PQVFNCGAPDTGNMEVILRYGNKEQ 540
Query: 137 KEKYLPKLIKGEHVGALAMSEPN-AGSDVVSMKCRADRVDGGYIINGNKMWCTNG--PTA 196
++L L++G AM+EP A SD +++C R Y+ING K W + P
Sbjct: 541 ISEWLIPLLEGRIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRC 600
Query: 197 QTLVVYAKTDANAGS-KGITAFIIEKGMPGFSTAQKLDKLGMRGS--DTCELVFENCFVP 256
+ L++ KTD NA K + +++ PG S + L G + E+ FEN VP
Sbjct: 601 RVLILMGKTDFNAPKHKQQSMILVDMRTPGISVKRPLTVFGFDDAPHGHAEISFENVVVP 660
Query: 257 EENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVKQREQFGRPIGEFQF 316
+N+L EG+G + L RL +G + ++++ R+ FG+ I +
Sbjct: 661 AKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMELMAQRALSRKTFGKFIAQHGS 720
Query: 317 IQGKLADMYTSLQSSRAYVYSVARDCDSGKVDPKDCAGVILSAAERATQVALQ----AIQ 376
LA + L+ +R V A D K K G++ A A +AL+ AIQ
Sbjct: 721 FVSDLAKLRVELEGTRLLVLEAADHLD--KFGNKKARGILAMAKVAAPNMALKVLDTAIQ 780
Query: 377 CLGGNGYVNEYTTGRLLRDAKLYEIGAGTSEVRRMIIGR 404
G G ++ L A+ I G EV IG+
Sbjct: 781 VHGAAGVSSDTVLAHLWATARTLRIADGPDEVHLGTIGK 815
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Q9SWG0 | 1.9e-207 | 84.84 | Isovaleryl-CoA dehydrogenase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=I... | [more] |
| Q9FS87 | 9.7e-204 | 84.26 | Isovaleryl-CoA dehydrogenase, mitochondrial OS=Solanum tuberosum OX=4113 GN=IVD ... | [more] |
| Q75IM9 | 5.3e-202 | 87.44 | Isovaleryl-CoA dehydrogenase, mitochondrial OS=Oryza sativa subsp. japonica OX=3... | [more] |
| Q9FS88 | 3.2e-199 | 80.34 | 2-methylacyl-CoA dehydrogenase, mitochondrial OS=Solanum tuberosum OX=4113 GN=2M... | [more] |
| Q9JHI5 | 7.5e-148 | 67.73 | Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Ivd PE=1... | [more] |
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR037069 | Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily | GENE3D | 1.10.540.10 | | coord: 15..147
e-value: 7.8E-37
score: 128.1 |
| None | No IPR available | GENE3D | 2.40.110.10 | | coord: 149..261
e-value: 2.8E-45
score: 155.0 |
| None | No IPR available | GENE3D | 1.20.140.10 | | coord: 262..405
e-value: 4.9E-49
score: 168.1 |
| None | No IPR available | PIRSF | PIRSF016578 | PIGM | coord: 25..123
e-value: 0.12
score: 8.8
coord: 157..409
e-value: 8.9E-18
score: 61.9 |
| None | No IPR available | PANTHER | PTHR43884 | ACYL-COA DEHYDROGENASE | coord: 1..409 |
| None | No IPR available | PANTHER | PTHR43884:SF27 | 2-METHYLACYL-COA DEHYDROGENASE, MITOCHONDRIAL | coord: 1..409 |
| IPR013786 | Acyl-CoA dehydrogenase/oxidase, N-terminal | PFAM | PF02771 | Acyl-CoA_dh_N | coord: 33..146
e-value: 9.9E-35
score: 119.6 |
| IPR009075 | Acyl-CoA dehydrogenase/oxidase C-terminal | PFAM | PF00441 | Acyl-CoA_dh_1 | coord: 257..405
e-value: 1.0E-43
score: 149.1 |
| IPR006091 | Acyl-CoA oxidase/dehydrogenase, central domain | PFAM | PF02770 | Acyl-CoA_dh_M | coord: 150..245
e-value: 1.0E-26
score: 92.9 |
| IPR006089 | Acyl-CoA dehydrogenase, conserved site | PROSITE | PS00073 | ACYL_COA_DH_2 | coord: 364..383 |
| IPR006089 | Acyl-CoA dehydrogenase, conserved site | PROSITE | PS00072 | ACYL_COA_DH_1 | coord: 152..164 |
| IPR034183 | Isovaleryl-CoA dehydrogenase | CDD | cd01156 | IVD | coord: 31..407
e-value: 0.0
score: 717.653 |
| IPR036250 | Acyl-CoA dehydrogenase-like, C-terminal | SUPERFAMILY | 47203 | Acyl-CoA dehydrogenase C-terminal domain-like | coord: 255..407 |
| IPR009100 | Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily | SUPERFAMILY | 56645 | Acyl-CoA dehydrogenase NM domain-like | coord: 28..268 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006552 |
leucine catabolic process |
| cellular_component |
GO:0005759 |
mitochondrial matrix |
| molecular_function |
GO:0050660 |
flavin adenine dinucleotide binding |
| molecular_function |
GO:0008470 |
isovaleryl-CoA dehydrogenase activity |
| molecular_function |
GO:0003995 |
acyl-CoA dehydrogenase activity |
| molecular_function |
GO:0016627 |
oxidoreductase activity, acting on the CH-CH group of donors |
|
