CmaCh02G008630 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G008630
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NusB domain-containing protein
Location	Cma_Chr02: 5033280 .. 5037448 (-)
RNA-Seq Expression	CmaCh02G008630
Synteny	CmaCh02G008630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTATCTTCACCCGACCCGCCTCCCCTTATCTTTTTCCCTCCAACTCTCTGTTTCATCTTCTCCGCCTTCTTTCTAACCCCTCCTTCCCGGCTTAAACCCTCCACGTTCGGCAGAGGTCAACCGGAATTGGATCAGCCATATGGTTTGAAATTCTCCTGCGCCCAGCATGGTGGAACTTGTATCAATGGTGGTTTTGCCCACAAGACTGGATAATGTTATTGCTACCAGGTATATCCTTTGCCTTTGGTCACGAACCATTTGAATTCTGAAATGAAGAGGATAGCTTGTGCTTTGATTCTTCATTTCATACTGATTACTTGCTCTGTATGCTTGTAAGCGTAACATTTGCTTTAAAGTTTAAACGCCATCGTTGAATCTTTCTTTTGTAGTCTAAAATTAGGTTAGAACAGATGGCGGATATATGCAATGTATGGACTATGTTAGAATTCACTATTGGAACCAGAAGCGAAGCCAATATGTTTGATGATAGGTTATGATAAATTTAATGGATAATTTATGCTCTTTTGACTAACTAGACATTAGGTAAGAGTGAATTATGATGCCAAAGAATTGTATTCTTGTTGTTTTGTTTAGTTTTCCTAAAGAAAGTAAAATGGATCAAAGAAAGGTGTATGATCTGGGCTTCTTAAATTTTTCAAAAGTAAAGATCTATGCTCCATGATTTCTACATATTTCCAACAAACTAGACTTAACTTAGTGTGCTTAATTTTCGTTCTTGCTCTGTCTCTGTGCTTCAGGCCTAATTTTCATTTCTCCTCCCACGTTTCTGGAATATGCTGTTTCCCATTCCCCACTAGTGCAATTGTTCCCTATGTAAAAGAATCCGTGCCACTCCTCTGCCCTCAAGCCTCGCTTCGCGCTTCTACTTCTTTCTCCAAAAATTCTGTGGGTAAAGAGAGCAGTTCTGTTTTAGTTTCTTCCATTGAACCAATACCAAAGATTGACAAGAGTGGGAGATTTTGCAGCCCCAGAGCTGCTAGAGAGCTTGCTTTGTAAGATCCACAACTTCCTTCTCACTTATTATTTCCTTTATATATATATATATATATATATATATTTATTTATTTATGGGTATCTCTTCTGTCTGCCTATTCAGAAAGTTGGTCTAGTCACTAGGAACATGCTCTAAGAATTTGTTTAATTTGAAGACTTGTAATCAATTCTAATCCTGCTAGATTATTCAATCACAGGTCAATTATTTATGCGTCTTGTTTAGAAGGCTCTGATCCAGTTCGACTCTTTGAGAAGCGGTTGAATGCTCGTCTAGGTAATCTTTGGTTGAGATGTGGTGTTCTGCTGCTCCATATACAATTTGATGCTTTTTTATTGTTTTGGAGAAATAGAAGTCACGTCTTTAATTCAAAAATGACACCAACTTCTTACTTTATCCATTCATACAATTCAGAACCGGGATATGAATTTGACAAGACATCATTGATGGAATACAACCATATGAGCTTTGGTGGGCCGCCAGTAACTGTGGAAACAGCTGAAGAAGCAGATGAGCTTCTACGTAAGGATGAAAAGGATTCTGCAATCGGTAAATAGTTTTGTGGCTTTTGTATGTATATTATTTGTCCTTATTTCACTCATTACTTTGTTCTAAAAGCACAATTGGGCAGTATTATATGCTTCTCTGCTTTCAATTAGAGATGCCTTTTCTTCATACCATGTACGAAAAGAATTTGAGGGAAAAATCCATCTTCTTCAATTCAAAGTGATATCATGACTCGTGAGATCTGTTGGTATCGTTTTCTTTTAGATGGGAGTTTGTAAACAAGCAGTAGAGAGCAAAAACTTTTTGACAAACATCTTGAACGCTAACTCTTGGAGACTAACCTAGATTTGGTTCTAAAATCAATAACACATTGCTTGAACTCTTCAAGAAATATGCAAGCGAAAGTTTTGCTTCAGGCTTTATCGTCTTGTTCAATTATGTTACCTTTATTTGTATATCGATCTGGCGATGTTTTTCTCTTTATGCACCACATAAATTGTTGTGACATATCGTAATTACTAACAAACTACTGTCTATAGCTTCTCCTTCTATATATTTTCATTACAGTTGTAAATACAGTCTTGTCAAACCTCGAAGTCCCATTTCATTGCTTTTAGTGATAGCTAAGTTCTGTTTCCTGCATGACTGTATCTCAGAGGCAGAAATCCTTGCGGCCCCTCCAAAGGTTGTCTACAGCAAACTGATCTTACGGTAAATGTGGTTTTTATTTCCCTGCTTTTGGCAGAGGATGATCTGATGAAAATTTAGTATGAATTTCATGTATTTTATCAATGTTATTATTTATTGGGTGATATAAGGTCAGTCGTCGTCTTCATGGTTTTTCAGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACAGATGGGACAGTCACGTGCTTAAAATTGATAAAGTCATTCCTTCAACTTGGAAGGTTCGTAAAGAGCTTTATGCTACTTTTGTTTTCTGATTTTTCTCTTCTCTTCTAGTTGGGACTATAAGTTGAACCATTTGCTGTGGAGCTATAATACTCTTGGTCAACAAGGACCATATAAATAATAAGACTTAAAAAGGGAAATGAGTTCAAAATCATGGTAGCTACCTACCTAAAGTTTAATATCTCATGAGTTATTTGGTAACCAAACGTAGTAGGATGAGATAGTTGTCTTGTGAGAATAATTAAGGTGTGTGCAAGCTAGTCTGAACACTCACGAATATATATTTATATATTATATACACAAAATTCCTCCCATATTGATCTTTGCCTCTTAGTCATAGCATATGCATGCTTTTTGCACGACTTATAGAAATTTGAAAATCTGTATATGATGATGGAAAGGGTGGAACCACAAATCTAACTGCAACATATTTCAATGATGGGTATTGTTGAATCTCTCACGCGAGTGTTGGAAACCCTGAGCTTTGATGGTCAACGATTTGAGCTTAGTGGTAAATGTCTTAGGACTCGGCAAATAGTTAATGGTTTCAAAATGTATTGGATCACCATTCCAGAATATTATATCTTGCGGGTTCTTGACAACAGCCTTTATGTTCTTATGATCCAGACATTGGTGTTGCATGAGTAAGCCAAGATTATGCGCTTGGACATGCACTTCTTGAATTAAATTGCTGATTTTAAAAACTTTCTTCAAAATTTATAATGCTGGCATAGATTATACATCTCGTGCCTTCATATATTTCAGGACAAGCCAGCAGGACGGATTCTGGAACTTTGTATTCTTCACCTGGCTATGTCTGAAATAACGGTGGTTGGAACAAGGCATCAGATTGTGATTAACGAGGTAAATACATTTAAAGCTTCTTACTACAAGGTCACAATTATCCTCTCTTGTATCTGTTAATAGATGTCTGCATCAATCCCGTTTTTTAAAATTTTCCTGGTGATTGATGAAGGCCGTCGATCTTGCAAAACGATTCTGCGACGGAGCAGCACCTCGTATTATTAATGGGTGCCTTAGGACCTTTGTGAAGGACATCCAAGAAACTGATTCTACTCATGCTCGTGTGAAGGAAGTAGTCAGTACATGACTCTAAACTCTTGGGGTGGCTCAGGACCTTTGTAAGGATATACAAATTTTTGACTCAACTCGTGCTCTAGAGAAGCAAGAAGTGACTCTGAAAGTGGTGAGTCGTTAAGATGCTGTTGGCCGGATGGATAAGGAATTAAGAGGGCACTTCCCTTCCATGGAAATGGAGTACTACGGAGTTTTAGATGTGTAATTGTTCTAGGGAGATAGTTCCTACAAAAGACTTCGATTAAGTGTATCAACTTTACCTCCTAAGTTTTAATTTTATCAAATGAAAATCTGGACTTAGAACATGTATTGAAATCTTTACCTCAGGGTTAAGGTCGACTCCCTGATAGGCCCTCCAAAACAATGAAAAACTTAATTCCAAACAAACCCATAAATATTTGTCCTGCTTCCCTTTTATTCTTGATATTGATACATGGCTATTACACAGGAAGGATAGCCTTTCCCAACTTCATAGTTATCAAACTACTAAGGCAGTTGCAATTATTACAGAGGACGTATAAAATAAACATTGTTATGTAGGGGAGACTGGCTGTGTTAAGGAACAGTGATTCAGTCGCACACTAGCTAGCGCTGCTAACACGAACAACCAGAG

mRNA sequence

CTTATCTTCACCCGACCCGCCTCCCCTTATCTTTTTCCCTCCAACTCTCTGTTTCATCTTCTCCGCCTTCTTTCTAACCCCTCCTTCCCGGCTTAAACCCTCCACGTTCGGCAGAGGTCAACCGGAATTGGATCAGCCATATGGTTTGAAATTCTCCTGCGCCCAGCATGGTGGAACTTGTATCAATGGTGGTTTTGCCCACAAGACTGGATAATGTTATTGCTACCAGGCCTAATTTTCATTTCTCCTCCCACGTTTCTGGAATATGCTGTTTCCCATTCCCCACTAGTGCAATTGTTCCCTATGTAAAAGAATCCGTGCCACTCCTCTGCCCTCAAGCCTCGCTTCGCGCTTCTACTTCTTTCTCCAAAAATTCTGTGGGTAAAGAGAGCAGTTCTGTTTTAGTTTCTTCCATTGAACCAATACCAAAGATTGACAAGAGTGGGAGATTTTGCAGCCCCAGAGCTGCTAGAGAGCTTGCTTTGTCAATTATTTATGCGTCTTGTTTAGAAGGCTCTGATCCAGTTCGACTCTTTGAGAAGCGGTTGAATGCTCGTCTAGAACCGGGATATGAATTTGACAAGACATCATTGATGGAATACAACCATATGAGCTTTGGTGGGCCGCCAGTAACTGTGGAAACAGCTGAAGAAGCAGATGAGCTTCTACGTAAGGATGAAAAGGATTCTGCAATCGAGGCAGAAATCCTTGCGGCCCCTCCAAAGGTTGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACAGATGGGACAGTCACGTGCTTAAAATTGATAAAGTCATTCCTTCAACTTGGAAGGACAAGCCAGCAGGACGGATTCTGGAACTTTGTATTCTTCACCTGGCTATGTCTGAAATAACGGTGGTTGGAACAAGGCATCAGATTGTGATTAACGAGGCCGTCGATCTTGCAAAACGATTCTGCGACGGAGCAGCACCTCGTATTATTAATGGGTGCCTTAGGACCTTTGTGAAGGACATCCAAGAAACTGATTCTACTCATGCTCGTGTGAAGGAAGTAGTCAGTACATGACTCTAAACTCTTGGGGTGGCTCAGGACCTTTGTAAGGATATACAAATTTTTGACTCAACTCGTGCTCTAGAGAAGCAAGAAGTGACTCTGAAAGTGGTGAGTCGTTAAGATGCTGTTGGCCGGATGGATAAGGAATTAAGAGGGCACTTCCCTTCCATGGAAATGGAGTACTACGGAGTTTTAGATGTGTAATTGTTCTAGGGAGATAGTTCCTACAAAAGACTTCGATTAAGTGTATCAACTTTACCTCCTAAGTTTTAATTTTATCAAATGAAAATCTGGACTTAGAACATGTATTGAAATCTTTACCTCAGGGTTAAGGTCGACTCCCTGATAGGCCCTCCAAAACAATGAAAAACTTAATTCCAAACAAACCCATAAATATTTGTCCTGCTTCCCTTTTATTCTTGATATTGATACATGGCTATTACACAGGAAGGATAGCCTTTCCCAACTTCATAGTTATCAAACTACTAAGGCAGTTGCAATTATTACAGAGGACGTATAAAATAAACATTGTTATGTAGGGGAGACTGGCTGTGTTAAGGAACAGTGATTCAGTCGCACACTAGCTAGCGCTGCTAACACGAACAACCAGAG

Coding sequence (CDS)

ATGGTGGAACTTGTATCAATGGTGGTTTTGCCCACAAGACTGGATAATGTTATTGCTACCAGGCCTAATTTTCATTTCTCCTCCCACGTTTCTGGAATATGCTGTTTCCCATTCCCCACTAGTGCAATTGTTCCCTATGTAAAAGAATCCGTGCCACTCCTCTGCCCTCAAGCCTCGCTTCGCGCTTCTACTTCTTTCTCCAAAAATTCTGTGGGTAAAGAGAGCAGTTCTGTTTTAGTTTCTTCCATTGAACCAATACCAAAGATTGACAAGAGTGGGAGATTTTGCAGCCCCAGAGCTGCTAGAGAGCTTGCTTTGTCAATTATTTATGCGTCTTGTTTAGAAGGCTCTGATCCAGTTCGACTCTTTGAGAAGCGGTTGAATGCTCGTCTAGAACCGGGATATGAATTTGACAAGACATCATTGATGGAATACAACCATATGAGCTTTGGTGGGCCGCCAGTAACTGTGGAAACAGCTGAAGAAGCAGATGAGCTTCTACGTAAGGATGAAAAGGATTCTGCAATCGAGGCAGAAATCCTTGCGGCCCCTCCAAAGGTTGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACAGATGGGACAGTCACGTGCTTAAAATTGATAAAGTCATTCCTTCAACTTGGAAGGACAAGCCAGCAGGACGGATTCTGGAACTTTGTATTCTTCACCTGGCTATGTCTGAAATAACGGTGGTTGGAACAAGGCATCAGATTGTGATTAACGAGGCCGTCGATCTTGCAAAACGATTCTGCGACGGAGCAGCACCTCGTATTATTAATGGGTGCCTTAGGACCTTTGTGAAGGACATCCAAGAAACTGATTCTACTCATGCTCGTGTGAAGGAAGTAGTCAGTACATGA

Protein sequence

MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVST

Homology

[Close]

BLAST of CmaCh02G008630 vs. ExPASy Swiss-Prot
Match: Q18B61 (Transcription antitermination protein NusB OS=Clostridioides difficile (strain 630) OX=272563 GN=nusB PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.6e-06
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 214 KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAP 273
           KID++I    K+    R+  +++ IL L++ EI  + T +++ INEAV+LAK +CD  +P
Sbjct: 94  KIDELINKHAKNWTVDRMPKVDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKSP 153

Query: 274 RIINGCLRTFVKDI 286
           + ING L + V +I
Sbjct: 154 KFINGILGSVVDEI 167

[Close]

BLAST of CmaCh02G008630 vs. ExPASy Swiss-Prot
Match: A7GWZ7 (Transcription antitermination protein NusB OS=Campylobacter curvus (strain 525.92) OX=360105 GN=nusB PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.8e-05
Identity = 29/82 (35.37%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 202 VAVVDRWDSHVLK---IDKVIPSTWKDKPAGR--ILELCILHLAMSEITVVGTRHQIVIN 261
           +  ++ +D+  LK   +D+++    K+K   R  I+EL IL L + E+   GT   ++IN
Sbjct: 43  IQALETFDAICLKKGELDEILKPYLKEKDIERIGIVELAILRLGVYEMKFTGTDKAVIIN 102

Query: 262 EAVDLAKRFCDGAAPRIINGCL 279
           EA++LAK     +AP+ ING L
Sbjct: 103 EAIELAKELGGDSAPKFINGVL 124

[Close]

BLAST of CmaCh02G008630 vs. ExPASy Swiss-Prot
Match: Q8GIR7 (Transcription antitermination protein NusB OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=nusB PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.3e-05
Identity = 29/68 (42.65%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 214 KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAP 273
           +ID+ +     D    R+  L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    
Sbjct: 129 RIDRTLNDVMVDWQLHRVPRLDQDILRLAAAEILFLGTPEQVAINEAVELANRYSDEEGR 188

Query: 274 RIINGCLR 280
           R ING LR
Sbjct: 189 RFINGVLR 196

[Close]

BLAST of CmaCh02G008630 vs. ExPASy Swiss-Prot
Match: Q5N1J7 (Transcription antitermination protein NusB OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=nusB PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.3e-05
Identity = 29/68 (42.65%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 214 KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAP 273
           +ID+ +     D    R+  L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    
Sbjct: 129 RIDRTLNDVMVDWQLHRVPRLDQDILRLAAAEILFLGTPEQVAINEAVELANRYSDEEGR 188

Query: 274 RIINGCLR 280
           R ING LR
Sbjct: 189 RFINGVLR 196

[Close]

BLAST of CmaCh02G008630 vs. ExPASy Swiss-Prot
Match: B1WXY6 (Transcription antitermination protein NusB OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=nusB PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 5.2e-05
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 214 KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAP 273
           +ID+ + +  KD    R+  ++  IL LA++EI  +    ++ INEAV+LAKR+ D    
Sbjct: 133 EIDEQLEAVLKDWQLKRLAKIDQDILRLAVAEILFLDVPEKVSINEAVELAKRYSDDDGY 192

Query: 274 RIINGCLRTFVKDIQ 287
           R ING LR F   I+
Sbjct: 193 RFINGVLRRFTDHIK 207

[Close]

BLAST of CmaCh02G008630 vs. TAIR 10
Match: AT4G26370.1 (antitermination NusB domain-containing protein )

HSP 1 Score: 328.6 bits (841), Expect = 5.4e-90
Identity = 166/244 (68.03%), Postives = 197/244 (80.74%), Query Frame = 0


Query: 58  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGS 117
           +SLR   S +++++   + S       P+PKIDKSGR  SPRAARELAL I+YA+CLEGS
Sbjct: 57  SSLRLFLSPTRSALRTPTISAEEVKDVPMPKIDKSGRLSSPRAARELALVILYAACLEGS 116

Query: 118 DPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIE 177
           DP+RLFEKR+NAR EPGYEFDK+SL+EYNHMSFGGPPV  ET EE DEL+R DEK+S IE
Sbjct: 117 DPIRLFEKRINARREPGYEFDKSSLLEYNHMSFGGPPVKTETKEEEDELVRHDEKESKIE 176

Query: 178 AEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCIL 237
           AE+L+APPK+VYSKL+LRF +KLL AVVD+WDSHV+ I+K+ P  WK  PAGRILE  IL
Sbjct: 177 AEVLSAPPKLVYSKLVLRFAKKLLAAVVDKWDSHVVIIEKISPPDWKSAPAGRILEFSIL 236

Query: 238 HLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHA-RVK 297
           HLAMSE+ V+ TRH IVINEAVDLAKRFCDG+APRIINGCLRTFVKD   T +  A  +K
Sbjct: 237 HLAMSEVAVLETRHPIVINEAVDLAKRFCDGSAPRIINGCLRTFVKDRATTSTPQALELK 296

Query: 298 EVVS 301
           + VS
Sbjct: 297 QEVS 300

[Close]

BLAST of CmaCh02G008630 vs. TAIR 10
Match: AT4G26370.2 (antitermination NusB domain-containing protein )

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-37
Identity = 78/124 (62.90%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 58  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGS 117
           +SLR   S +++++   + S       P+PKIDKSGR  SPRAARELAL I+YA+CLEGS
Sbjct: 57  SSLRLFLSPTRSALRTPTISAEEVKDVPMPKIDKSGRLSSPRAARELALVILYAACLEGS 116

Query: 118 DPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIE 177
           DP+RLFEKR+NAR EPGYEFDK+SL+EYNHMSFGGPPV  ET EE DEL+R DEK+S I 
Sbjct: 117 DPIRLFEKRINARREPGYEFDKSSLLEYNHMSFGGPPVKTETKEEEDELVRHDEKESKIG 176

Query: 178 AEIL 182
             ++
Sbjct: 177 RSLI 180

The following BLAST results are available for this feature:

BLAST of CmaCh02G008630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q18B61	3.6e-06	39.19	Transcription antitermination protein NusB OS=Clostridioides difficile (strain 6...	[more]
A7GWZ7	1.8e-05	35.37	Transcription antitermination protein NusB OS=Campylobacter curvus (strain 525.9...	[more]
Q8GIR7	2.3e-05	42.65	Transcription antitermination protein NusB OS=Synechococcus elongatus (strain PC...	[more]
Q5N1J7	2.3e-05	42.65	Transcription antitermination protein NusB OS=Synechococcus sp. (strain ATCC 271...	[more]
B1WXY6	5.2e-05	38.67	Transcription antitermination protein NusB OS=Crocosphaera subtropica (strain AT...	[more]

BLAST of CmaCh02G008630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26370.1	5.4e-90	68.03	antitermination NusB domain-containing protein	[more]
AT4G26370.2	1.1e-37	62.90	antitermination NusB domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006027	NusB/RsmB/TIM44	PFAM	PF01029	NusB	coord: 197..283 e-value: 9.6E-12 score: 45.3
IPR035926	NusB-like superfamily	GENE3D	1.10.940.10		coord: 98..297 e-value: 5.4E-20 score: 73.7
IPR035926	NusB-like superfamily	SUPERFAMILY	48013	NusB-like	coord: 96..287
IPR011605	NusB antitermination factor	PANTHER	PTHR11078	N UTILIZATION SUBSTANCE PROTEIN B-RELATED	coord: 67..293

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G008630.1	CmaCh02G008630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0031564	transcription antitermination
biological_process	GO:0006353	DNA-templated transcription, termination
molecular_function	GO:0003723	RNA binding