CmaCh02G008520 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G008520
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	embryo-specific protein ATS3A-like
Location	Cma_Chr02: 4964730 .. 4965712 (-)
RNA-Seq Expression	CmaCh02G008520
Synteny	CmaCh02G008520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAAATTAGGGTTTGAAAAAAAAGGGAAATGGCCAAAATCCAAGCAACTCTATCTCTGCTTCAGAATCTAATCCCCACTTTTTGATGTTCCCAAGAAAAGAATTGCCGTCGCCGCCGCCGCCGCCGCCTCTCTTTCCTTATATATACTTTCTTCTTCTTTCTTCCTCCTCCTCCCATTCCAAACATGCCGTTTTCCGGCGGAACAGCCCCGCCCTTCTGCGCCCTTCTCCTCCTCTCTCTACTCGCCGCCGGGAACTGCCTCGCTTCAACCCATGAGGTCTTTTCTTCTACTCATTTATGTTACTTTTAATTTCCATATTTATTCCAGTTACCTTAAATATCATATTTATTCTAGATATATGTCTTATCATATAATTATAGTTAAAATCTTGTATCTATTTGTTTTGTTGCTTTCTTTTCATTTATGGTTATTCTCGTATTCTTTGTAATTTATTTTTCTCAACTAAAATGCAGAAAGCTTGCATGTATGCCGTCACTGTGGAAACAACGTGCACAAAGGGCGCCGACACGTCGAACCACGTCAGCCTGAGATTCGGCGACACGAATTCGAACGACATTGTCGTCGGACACCTGAATTCCAAGCACGTGAGGAGGGTGGATTCTTTAGAACCACAAGTTCTGGATGACATGCCAAGAAAGCCGTTTCAAGCTTGCATGGTGGATCACTTCCAAGTCACTGCAAAATGTGTCACCTCGCCGATTTGTTACCTTTACCTGAAAGTCGCCGGCGCCGACGACTGGCGGCCGGGATTCGTCCATGTTCGGCTGTTGGAGAGCCCACATCTTAGCTCAAATAATTTCTATTTCCGACGTGTGTTGCCTCGCCACGTTTGGCATGGATTGGACACGTGTCGTGGTGACGTCACCCCTTTTGGCATCAAACGCAGTAGAAAAGTCTTTGCCGCTAGCAAACATTTTTTAAGGCATAAATTCAATTAAATTCCCCAAATGTAATTAAAT

mRNA sequence

AGAGAAATTAGGGTTTGAAAAAAAAGGGAAATGGCCAAAATCCAAGCAACTCTATCTCTGCTTCAGAATCTAATCCCCACTTTTTGATGTTCCCAAGAAAAGAATTGCCGTCGCCGCCGCCGCCGCCGCCTCTCTTTCCTTATATATACTTTCTTCTTCTTTCTTCCTCCTCCTCCCATTCCAAACATGCCGTTTTCCGGCGGAACAGCCCCGCCCTTCTGCGCCCTTCTCCTCCTCTCTCTACTCGCCGCCGGGAACTGCCTCGCTTCAACCCATGAGAAAGCTTGCATGTATGCCGTCACTGTGGAAACAACGTGCACAAAGGGCGCCGACACGTCGAACCACGTCAGCCTGAGATTCGGCGACACGAATTCGAACGACATTGTCGTCGGACACCTGAATTCCAAGCACGTGAGGAGGGTGGATTCTTTAGAACCACAAGTTCTGGATGACATGCCAAGAAAGCCGTTTCAAGCTTGCATGGTGGATCACTTCCAAGTCACTGCAAAATGTGTCACCTCGCCGATTTGTTACCTTTACCTGAAAGTCGCCGGCGCCGACGACTGGCGGCCGGGATTCGTCCATGTTCGGCTGTTGGAGAGCCCACATCTTAGCTCAAATAATTTCTATTTCCGACGTGTGTTGCCTCGCCACGTTTGGCATGGATTGGACACGTGTCGTGGTGACGTCACCCCTTTTGGCATCAAACGCAGTAGAAAAGTCTTTGCCGCTAGCAAACATTTTTTAAGGCATAAATTCAATTAAATTCCCCAAATGTAATTAAAT

Coding sequence (CDS)

ATGCCGTTTTCCGGCGGAACAGCCCCGCCCTTCTGCGCCCTTCTCCTCCTCTCTCTACTCGCCGCCGGGAACTGCCTCGCTTCAACCCATGAGAAAGCTTGCATGTATGCCGTCACTGTGGAAACAACGTGCACAAAGGGCGCCGACACGTCGAACCACGTCAGCCTGAGATTCGGCGACACGAATTCGAACGACATTGTCGTCGGACACCTGAATTCCAAGCACGTGAGGAGGGTGGATTCTTTAGAACCACAAGTTCTGGATGACATGCCAAGAAAGCCGTTTCAAGCTTGCATGGTGGATCACTTCCAAGTCACTGCAAAATGTGTCACCTCGCCGATTTGTTACCTTTACCTGAAAGTCGCCGGCGCCGACGACTGGCGGCCGGGATTCGTCCATGTTCGGCTGTTGGAGAGCCCACATCTTAGCTCAAATAATTTCTATTTCCGACGTGTGTTGCCTCGCCACGTTTGGCATGGATTGGACACGTGTCGTGGTGACGTCACCCCTTTTGGCATCAAACGCAGTAGAAAAGTCTTTGCCGCTAGCAAACATTTTTTAAGGCATAAATTCAATTAA

Protein sequence

MPFSGGTAPPFCALLLLSLLAAGNCLASTHEKACMYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVGHLNSKHVRRVDSLEPQVLDDMPRKPFQACMVDHFQVTAKCVTSPICYLYLKVAGADDWRPGFVHVRLLESPHLSSNNFYFRRVLPRHVWHGLDTCRGDVTPFGIKRSRKVFAASKHFLRHKFN

Homology

[Close]

BLAST of CmaCh02G008520 vs. ExPASy Swiss-Prot
Match: Q6NPM5 (Embryo-specific protein ATS3B OS=Arabidopsis thaliana OX=3702 GN=ATS3B PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-11
Identity = 44/147 (29.93%), Postives = 63/147 (42.86%), Query Frame = 0


Query: 34  CMYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVGHLNSKHVRRVDSLEPQVLDDMPRK 93
           C Y V + T+C+    T + +S+ FGD   N I                    LDD   K
Sbjct: 48  CAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPR----------------LDDPSTK 107

Query: 94  PFQACMVDHFQVTAKCVTSPICYLYLKVAGADDWRPGFVHVRLLESPHLSSNNFYFRRVL 153
            F+ C  D FQ+   C T  ICY+YL  +G D W P  V +    S    +  F +   +
Sbjct: 108 TFEQCSSDTFQINGPC-TYQICYVYLYRSGPDGWIPNTVKI---YSHGSKAVTFPYNTYV 167

Query: 154 PRHVWHGLDTCR----GDVTPFGIKRS 177
           P  VW+G + C      +V   G++RS
Sbjct: 168 PESVWYGFNYCNSASDSNVLAIGLRRS 174

[Close]

BLAST of CmaCh02G008520 vs. ExPASy Swiss-Prot
Match: Q9LYP6 (Embryo-specific protein ATS3 OS=Arabidopsis thaliana OX=3702 GN=ATS3 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-07
Identity = 37/134 (27.61%), Postives = 56/134 (41.79%), Query Frame = 0


Query: 34  CMYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVGHLNSKHVRRVDSLEPQVLDDMPRK 93
           C Y V V T+C     T + +S+ FGD + N +    L                  + R 
Sbjct: 34  CPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGG----------------LVRG 93

Query: 94  P--FQACMVDHFQVTAKCVTSPICYLYLKVAGADDWRPGFVHVRLLESPHLSSNNFYFRR 153
           P     C  + FQV  +C+  PIC LY+   G D W P  + +    S    S  F F +
Sbjct: 94  PGGLGKCSTNTFQVRGQCLNDPICSLYINRNGPDGWVPESIEI---YSEGSKSVKFDFSK 148

Query: 154 VLPR-HVWHGLDTC 165
            +P+ + W+G + C
Sbjct: 154 SVPQLNTWYGHNNC 148

[Close]

BLAST of CmaCh02G008520 vs. TAIR 10
Match: AT5G62200.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 71.2 bits (173), Expect = 9.9e-13
Identity = 44/147 (29.93%), Postives = 63/147 (42.86%), Query Frame = 0


Query: 34  CMYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVGHLNSKHVRRVDSLEPQVLDDMPRK 93
           C Y V + T+C+    T + +S+ FGD   N I                    LDD   K
Sbjct: 48  CAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPR----------------LDDPSTK 107

Query: 94  PFQACMVDHFQVTAKCVTSPICYLYLKVAGADDWRPGFVHVRLLESPHLSSNNFYFRRVL 153
            F+ C  D FQ+   C T  ICY+YL  +G D W P  V +    S    +  F +   +
Sbjct: 108 TFEQCSSDTFQINGPC-TYQICYVYLYRSGPDGWIPNTVKI---YSHGSKAVTFPYNTYV 167

Query: 154 PRHVWHGLDTCR----GDVTPFGIKRS 177
           P  VW+G + C      +V   G++RS
Sbjct: 168 PESVWYGFNYCNSASDSNVLAIGLRRS 174

[Close]

BLAST of CmaCh02G008520 vs. TAIR 10
Match: AT5G62210.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-09
Identity = 40/143 (27.97%), Postives = 62/143 (43.36%), Query Frame = 0


Query: 31  EKACMYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVGHLNSKHVRRVDSLEPQVLDDM 90
           E++C Y V V T+C     + + V++  GD + N +V   L                 D 
Sbjct: 37  EESCPYTVIVTTSCFSPDWSRDQVTIALGDADDNQVVAPRL-----------------DK 96

Query: 91  PRK---PFQACMVDHFQVTAKCVTSPICYLYLKVAGADDWRPGFVHVRLLESPHLSSNNF 150
           P      F+ C  D FQV  KC+ + IC +Y+  +G D W P  V +    S    S  F
Sbjct: 97  PLSGGGGFEKCSSDTFQVKGKCLNT-ICSVYIYRSGTDGWIPETVEIYKEGS---KSVKF 156

Query: 151 YFRRVLPRHVWHGLDTCRGDVTP 171
            F + +P ++W+G + C     P
Sbjct: 157 DFNKNVPENIWYGNNYCNNTDLP 158

[Close]

BLAST of CmaCh02G008520 vs. TAIR 10
Match: AT5G07190.1 (seed gene 3 )

HSP 1 Score: 58.2 bits (139), Expect = 8.7e-09
Identity = 37/134 (27.61%), Postives = 56/134 (41.79%), Query Frame = 0


Query: 34  CMYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVGHLNSKHVRRVDSLEPQVLDDMPRK 93
           C Y V V T+C     T + +S+ FGD + N +    L                  + R 
Sbjct: 34  CPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGG----------------LVRG 93

Query: 94  P--FQACMVDHFQVTAKCVTSPICYLYLKVAGADDWRPGFVHVRLLESPHLSSNNFYFRR 153
           P     C  + FQV  +C+  PIC LY+   G D W P  + +    S    S  F F +
Sbjct: 94  PGGLGKCSTNTFQVRGQCLNDPICSLYINRNGPDGWVPESIEI---YSEGSKSVKFDFSK 148

Query: 154 VLPR-HVWHGLDTC 165
            +P+ + W+G + C
Sbjct: 154 SVPQLNTWYGHNNC 148

[Close]

BLAST of CmaCh02G008520 vs. TAIR 10
Match: AT5G07190.2 (seed gene 3 )

HSP 1 Score: 58.2 bits (139), Expect = 8.7e-09
Identity = 37/134 (27.61%), Postives = 56/134 (41.79%), Query Frame = 0


Query: 34  CMYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVGHLNSKHVRRVDSLEPQVLDDMPRK 93
           C Y V V T+C     T + +S+ FGD + N +    L                  + R 
Sbjct: 6   CPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGG----------------LVRG 65

Query: 94  P--FQACMVDHFQVTAKCVTSPICYLYLKVAGADDWRPGFVHVRLLESPHLSSNNFYFRR 153
           P     C  + FQV  +C+  PIC LY+   G D W P  + +    S    S  F F +
Sbjct: 66  PGGLGKCSTNTFQVRGQCLNDPICSLYINRNGPDGWVPESIEI---YSEGSKSVKFDFSK 120

Query: 154 VLPR-HVWHGLDTC 165
            +P+ + W+G + C
Sbjct: 126 SVPQLNTWYGHNNC 120

The following BLAST results are available for this feature:

BLAST of CmaCh02G008520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NPM5	1.4e-11	29.93	Embryo-specific protein ATS3B OS=Arabidopsis thaliana OX=3702 GN=ATS3B PE=1 SV=1	[more]
Q9LYP6	1.2e-07	27.61	Embryo-specific protein ATS3 OS=Arabidopsis thaliana OX=3702 GN=ATS3 PE=2 SV=1	[more]

BLAST of CmaCh02G008520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62200.1	9.9e-13	29.93	Embryo-specific protein 3, (ATS3)	[more]
AT5G62210.1	1.0e-09	27.97	Embryo-specific protein 3, (ATS3)	[more]
AT5G07190.1	8.7e-09	27.61	seed gene 3	[more]
AT5G07190.2	8.7e-09	27.61	seed gene 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010417	Embryo-specific ATS3	PFAM	PF06232	ATS3	coord: 26..164 e-value: 1.6E-41 score: 141.1
None	No IPR available	PANTHER	PTHR31718:SF30	EMBRYO-SPECIFIC PROTEIN	coord: 11..183
None	No IPR available	PANTHER	PTHR31718	FAMILY NOT NAMED	coord: 11..183
IPR036392	PLAT/LH2 domain superfamily	SUPERFAMILY	49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	coord: 32..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G008520.1	CmaCh02G008520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005515	protein binding