CmaCh02G008470 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G008470
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	zinc finger protein CONSTANS-LIKE 14-like
Location	Cma_Chr02: 4946890 .. 4949077 (-)
RNA-Seq Expression	CmaCh02G008470
Synteny	CmaCh02G008470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCAATCTCCAACTCTCTCGAGCCTCCCCTTCCCCTTCACGCACACTCTGATCTTATTCTTTCTAAAACTCACGCGCCGCCGTCCCAATGACCATCTCCCACTTTCTCTCCGCCGCCTCGCATTCCTCCACCGACACCGCCGGTGTTGATTTTGACTGGTTACCTTGTTCCTCCATCAAGCAATGGAACTCTGAACTTCCAGACAGCTGGGGCGACGGTTCACTGACTTCACCGCCGCAACCCCAAACAATTCGTCCACCAACTAACAATATTCTATTTCACCATACTTTTAGCCTCCTTAACCCTTCTCTCAAAACCAATGGCCTTCTTCAACAAACCGGTTCGTCGCCGCCGCCACCGCCGCCCTACTTCGATATCCTCCAACACAAGCTATCCCTTCCCGCCGGTGATTTTCAGGTGAGAGGTTTATCATCACTTCAAGATGACACAATTAAACACCATTCCAGAACATGAAAAAGTTGATTATTTCCAATAATACAATAATTTATTCAAGACTCGAATTTAAAATCCAAAAAATGAGCCGTCACATACCCTTTTTTCATTTAATAAATGAGTCAAAAAGTCACATTATTATTTCAGTTTTTTTCAAATAATTTCTCCTATTAATGGAAATATTCAACCATGATGCTCAACCTCCATGCAAAGGATCATTGAAAAAGCTTGGCTTTTCAAGAACCCAAAGAGTTTCTTTTTTTCTTTTTGGGTCTCGAGTATAATATTTAAATTAATATACAAATGATTAAATGGGGTTTGAGTAATAAACTTAAAAATGGGTATGGCAGAGGAATAATCAGAGAGCAGAGAGTCCAGTTTCATGTGAAAGTAGCATCGCCATTGACGGGATGAGCAGAGCTTGTAGGTACAGTCCAGAAGAGAAGAAGGAGAGAATTCAAAGGTATAGGAGCAAAAGAAACCAGAGGAACTTCAACAAGAAGATTAAGGTTTTTTTTTTTTTTTTTTTTGTTCTCTCTTATATTCTTCTTTATCTTACCCTACTTGAAATTATGAAATAATTCTAAAGAATAATTCATTTCTTATTGTACCTACATATAATTTGATAGATTCTATATGCCAACAACCATAAAGTTAGTAATTGGAAAGATAATTTCTAACCTTATAGTATAAATATAATAATTCAAATAATGTAATGGTTTGATTCTTCACTAAAATAAGTAATTTATGCAAATTTATTGAGTATTGTTCGTATAATTTTCAATCTCATCCTTCATCTTTTTGCTTTTGTCATTCAAACCACACCTTTTTATTTGGATGGTAACCATGGAAAAGGCAGATTTTAAATTTATCCCAAAATTGGTCTAAAAAGCAAAGAAAACATTTGTTGAATCACAAATGACAAAACGATCGATCAATCAATCTTCTTCATATCTTCGCACCATGATAATAATTTTGTAGGTTTTGTTCATATGGCTAAAAATTCTCATAATACTATTTGTGTTCTTTTAGTATGCTTGTAGGAAGTCATTGGCCGATAGTCGACCAAGGATTAGAGGACGATTTGCAAGGTACAACTACGACGTTGCAAAGAATTATCCAGTGCAATGGAGTCATGGGCAAGAGGAAGAACAAGGAGAAGAAGAAGAAGAGGCAAATTGTGATGATAATTGGATCAAGTACTTTGTAGATGCATATTCTACGAATCTTATTCCATGAATCTCTCAAAAGCAAAAAATAATAATGTAGCTCTAGTTGCAATCGGCCTCTTCCATTTTGACCATCTTTCAGTTGCGTGAGAGTTTTACATTGCTTATTTAGGCTTCTCTCTCTTTTCTTTTTCCATGTATGGAACCCAAAGTTTGAGTTGGCTCTAACTATATTTGTATTAATAATGGTGAAGGGTAATTGTAATATTTAATCGATTATGGAGCTCGTTTTCATCTTTTTTGTGAAAAGGATTTGACATAGGTTAGGATTGACATGGGCAGGCTGAAAGATTGGGTGAGCCGTTTGGGGGATTGATTCGAGGTGTGTTTTTAGTGCTCGGGATAAACGCCAAGATAAGTCAAAAAGGTGGAGAGAATTTCAGTCATTGTCATTTGGTAAGACAACAACAAAAGGGATTGCAACTTAGTTTGGTGACAGTCGCCATCTTCACAATATTAGGTTCTTTCCATATTCTATTCTATACGGCCCTCAATAAAAGTTGCT

mRNA sequence

TTGCAATCTCCAACTCTCTCGAGCCTCCCCTTCCCCTTCACGCACACTCTGATCTTATTCTTTCTAAAACTCACGCGCCGCCGTCCCAATGACCATCTCCCACTTTCTCTCCGCCGCCTCGCATTCCTCCACCGACACCGCCGGTGTTGATTTTGACTGGTTACCTTGTTCCTCCATCAAGCAATGGAACTCTGAACTTCCAGACAGCTGGGGCGACGGTTCACTGACTTCACCGCCGCAACCCCAAACAATTCGTCCACCAACTAACAATATTCTATTTCACCATACTTTTAGCCTCCTTAACCCTTCTCTCAAAACCAATGGCCTTCTTCAACAAACCGGTTCGTCGCCGCCGCCACCGCCGCCCTACTTCGATATCCTCCAACACAAGCTATCCCTTCCCGCCGGTGATTTTCAGAGGAATAATCAGAGAGCAGAGAGTCCAGTTTCATGTGAAAGTAGCATCGCCATTGACGGGATGAGCAGAGCTTGTAGGTACAGTCCAGAAGAGAAGAAGGAGAGAATTCAAAGGTATAGGAGCAAAAGAAACCAGAGGAACTTCAACAAGAAGATTAAGTATGCTTGTAGGAAGTCATTGGCCGATAGTCGACCAAGGATTAGAGGACGATTTGCAAGGTACAACTACGACGTTGCAAAGAATTATCCAGTGCAATGGAGTCATGGGCAAGAGGAAGAACAAGGAGAAGAAGAAGAAGAGGCAAATTGTGATGATAATTGGATCAAGTACTTTGTAGATGCATATTCTACGAATCTTATTCCATGAATCTCTCAAAAGCAAAAAATAATAATGTAGCTCTAGTTGCAATCGGCCTCTTCCATTTTGACCATCTTTCAGTTGCGTGAGAGTTTTACATTGCTTATTTAGGCTTCTCTCTCTTTTCTTTTTCCATGTATGGAACCCAAAGTTTGAGTTGGCTCTAACTATATTTGTATTAATAATGGTGAAGGGTAATTGTAATATTTAATCGATTATGGAGCTCGTTTTCATCTTTTTTGTGAAAAGGATTTGACATAGGTTAGGATTGACATGGGCAGGCTGAAAGATTGGGTGAGCCGTTTGGGGGATTGATTCGAGGTGTGTTTTTAGTGCTCGGGATAAACGCCAAGATAAGTCAAAAAGGTGGAGAGAATTTCAGTCATTGTCATTTGGTAAGACAACAACAAAAGGGATTGCAACTTAGTTTGGTGACAGTCGCCATCTTCACAATATTAGGTTCTTTCCATATTCTATTCTATACGGCCCTCAATAAAAGTTGCT

Coding sequence (CDS)

ATGACCATCTCCCACTTTCTCTCCGCCGCCTCGCATTCCTCCACCGACACCGCCGGTGTTGATTTTGACTGGTTACCTTGTTCCTCCATCAAGCAATGGAACTCTGAACTTCCAGACAGCTGGGGCGACGGTTCACTGACTTCACCGCCGCAACCCCAAACAATTCGTCCACCAACTAACAATATTCTATTTCACCATACTTTTAGCCTCCTTAACCCTTCTCTCAAAACCAATGGCCTTCTTCAACAAACCGGTTCGTCGCCGCCGCCACCGCCGCCCTACTTCGATATCCTCCAACACAAGCTATCCCTTCCCGCCGGTGATTTTCAGAGGAATAATCAGAGAGCAGAGAGTCCAGTTTCATGTGAAAGTAGCATCGCCATTGACGGGATGAGCAGAGCTTGTAGGTACAGTCCAGAAGAGAAGAAGGAGAGAATTCAAAGGTATAGGAGCAAAAGAAACCAGAGGAACTTCAACAAGAAGATTAAGTATGCTTGTAGGAAGTCATTGGCCGATAGTCGACCAAGGATTAGAGGACGATTTGCAAGGTACAACTACGACGTTGCAAAGAATTATCCAGTGCAATGGAGTCATGGGCAAGAGGAAGAACAAGGAGAAGAAGAAGAAGAGGCAAATTGTGATGATAATTGGATCAAGTACTTTGTAGATGCATATTCTACGAATCTTATTCCATGA

Protein sequence

MTISHFLSAASHSSTDTAGVDFDWLPCSSIKQWNSELPDSWGDGSLTSPPQPQTIRPPTNNILFHHTFSLLNPSLKTNGLLQQTGSSPPPPPPYFDILQHKLSLPAGDFQRNNQRAESPVSCESSIAIDGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNYDVAKNYPVQWSHGQEEEQGEEEEEANCDDNWIKYFVDAYSTNLIP

Homology

[Close]

BLAST of CmaCh02G008470 vs. ExPASy Swiss-Prot
Match: Q9LKL2 (Two-component response regulator-like APRR1 OS=Arabidopsis thaliana OX=3702 GN=APRR1 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.3e-07
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 140 EEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRIRGRFAR----YNYDVAKNYPVQ 199
           + ++E + ++R KRNQR F+KKI+Y  RK LA+ RPR++G+F R     N D+    P  
Sbjct: 531 DRREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNVDL-NGQPDS 590

Query: 200 WSHGQEEEQGEEEEEANCDDN 217
             +  EEE+ EEEEE N D +
Sbjct: 591 ADYDDEEEEEEEEEEENRDSS 610

[Close]

BLAST of CmaCh02G008470 vs. ExPASy Swiss-Prot
Match: Q9SK53 (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.6e-06
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 134 ACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRIRGRFAR 184
           A + SP E++ R+ RYR KR  R F K I+YA RK+ A+ RPRI+GRFA+
Sbjct: 221 AVQLSPAEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAK 270

[Close]

BLAST of CmaCh02G008470 vs. ExPASy Swiss-Prot
Match: Q940T9 (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 4.7e-06
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 124 SSIAIDGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRIRGRFAR 183
           +S A  G  RA   +  E++ R+ RYR KR  R F K I+YA RK+ A+ RPRI+GRFA+
Sbjct: 277 TSGADPGTQRAVPLTSAEREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAK 336

[Close]

BLAST of CmaCh02G008470 vs. ExPASy Swiss-Prot
Match: O50055 (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.8e-05
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 138 SPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRIRGRFAR 184
           SP +++ R+ RYR K+  R F K I+YA RK+ A+ RPRI+GRFA+
Sbjct: 282 SPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAK 327

[Close]

BLAST of CmaCh02G008470 vs. ExPASy Swiss-Prot
Match: Q9FHH8 (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 4.0e-05
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 138 SPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRIRGRFAR 184
           S  +++ R+ RYR KR  R F K I+YA RK+ A+SRPRI+GRFA+
Sbjct: 281 SSMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAK 326

[Close]

BLAST of CmaCh02G008470 vs. TAIR 10
Match: AT5G59990.1 (CCT motif family protein )

HSP 1 Score: 109.8 bits (273), Expect = 3.0e-24
Identity = 65/126 (51.59%), Postives = 86/126 (68.25%), Query Frame = 0


Query: 103 SLPAGDFQRNNQRAESPVSCESSIAIDGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKI 162
           +L AGD  R+++R  S V  ES+  I+GMS+A +YSPEEKKE+I++YRSKRN RNFNK+I
Sbjct: 124 ALSAGDLPRSSRRESSTVWSESNAIIEGMSKAYKYSPEEKKEKIEKYRSKRNLRNFNKRI 183

Query: 163 KYACRKSLADSRPRIRGRFARYNYDVAKNYPVQWSHGQEEEQGEEEEEANCDDNWIKYFV 222
           KY CRK+LADSRPRIRGRFAR N +++          Q+E+    E      D W   F+
Sbjct: 184 KYECRKTLADSRPRIRGRFAR-NDEIS----------QQEQVDVMEAVVGDVDTWAS-FL 237

Query: 223 DAYSTN 229
           D++S N
Sbjct: 244 DSFSAN 237

[Close]

BLAST of CmaCh02G008470 vs. TAIR 10
Match: AT5G41380.1 (CCT motif family protein )

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-16
Identity = 51/111 (45.95%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 73  PSLKTNGLLQQTGSSPPPPPPYFDILQHKLSLPAGDFQRNNQRAESPVSCESSIAIDGMS 132
           P + ++ L     SSP      F   Q +     GD Q N +   S  +     + +   
Sbjct: 149 PMMDSSNLSYNNLSSPENA---FFSSQMRRVYSTGDLQNNMEMQRSSENSTMPFSEEQNF 208

Query: 133 RACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRIRGRFAR 184
           +  RYS EE+KE+I +YR+KRNQRNF K IKYACRK+LADSRPRIRGRFAR
Sbjct: 209 KVGRYSAEERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIRGRFAR 256

[Close]

BLAST of CmaCh02G008470 vs. TAIR 10
Match: AT1G63820.1 (CCT motif family protein )

HSP 1 Score: 80.1 bits (196), Expect = 2.6e-15
Identity = 67/172 (38.95%), Postives = 92/172 (53.49%), Query Frame = 0


Query: 59  TNNILFHHTFSLLNPSLKTNGLLQQTGSSPPPPPPYFDILQHKLSLPAGDFQR-----NN 118
           T  +LF+  F    P ++ +   Q       P   +F     ++    GD Q        
Sbjct: 101 TEQLLFNSPFDA--PFMEDSSNFQNQNLLNSPEDSFFSDHMRRV-YSTGDLQNLGRDFTG 160

Query: 119 QRA-ESPVSCESS----IAIDGMS-RACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACR 178
           QR+  SP++ ESS     + D  S R  RYS EE+KE+I +YR+KR QRNF K IKYACR
Sbjct: 161 QRSYSSPLAAESSPTTVFSGDEQSLRVGRYSSEERKEKISKYRAKRTQRNFTKTIKYACR 220

Query: 179 KSLADSRPRIRGRFARYNYDVAKNYPVQWSHGQEEEQGE--------EEEEA 212
           K+LAD+RPR+RGRFAR N +V +N  +  S  ++E   +        EEEEA
Sbjct: 221 KTLADNRPRVRGRFAR-NDEVFENPKIASSFTRQENDDDLWNLDGLHEEEEA 268

[Close]

BLAST of CmaCh02G008470 vs. TAIR 10
Match: AT2G33350.1 (CCT motif family protein )

HSP 1 Score: 78.6 bits (192), Expect = 7.5e-15
Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 131 MSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNYDVAK 190
           +++  + SPE++KE+I+RY  KRN+RNFNKKIKYACRK+LADSRPR+RGRFA+ +     
Sbjct: 300 LNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDEFGEP 359

Query: 191 NYPVQWSHGQEEEQ---GEEEEEANCDDN 217
           N     SH  +E++   G ++EE   D +
Sbjct: 360 NRQAFSSHHDDEDEDDMGVKDEEQLVDSS 388

[Close]

BLAST of CmaCh02G008470 vs. TAIR 10
Match: AT2G33350.2 (CCT motif family protein )

HSP 1 Score: 78.6 bits (192), Expect = 7.5e-15
Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 131 MSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNYDVAK 190
           +++  + SPE++KE+I+RY  KRN+RNFNKKIKYACRK+LADSRPR+RGRFA+ +     
Sbjct: 299 LNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDEFGEP 358

Query: 191 NYPVQWSHGQEEEQ---GEEEEEANCDDN 217
           N     SH  +E++   G ++EE   D +
Sbjct: 359 NRQAFSSHHDDEDEDDMGVKDEEQLVDSS 387

The following BLAST results are available for this feature:

BLAST of CmaCh02G008470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LKL2	7.3e-07	43.21	Two-component response regulator-like APRR1 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q9SK53	3.6e-06	54.00	Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1...	[more]
Q940T9	4.7e-06	48.33	Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2...	[more]
O50055	1.8e-05	52.17	Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1...	[more]
Q9FHH8	4.0e-05	54.35	Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2...	[more]

BLAST of CmaCh02G008470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59990.1	3.0e-24	51.59	CCT motif family protein	[more]
AT5G41380.1	3.0e-16	45.95	CCT motif family protein	[more]
AT1G63820.1	2.6e-15	38.95	CCT motif family protein	[more]
AT2G33350.1	7.5e-15	49.44	CCT motif family protein	[more]
AT2G33350.2	7.5e-15	49.44	CCT motif family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 143..183 e-value: 1.7E-17 score: 63.3
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 142..184 score: 15.566661
None	No IPR available	PANTHER	PTHR31319:SF76	CCT MOTIF PROTEIN	coord: 109..221
None	No IPR available	PANTHER	PTHR31319	ZINC FINGER PROTEIN CONSTANS-LIKE 4	coord: 109..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G008470.1	CmaCh02G008470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009909	regulation of flower development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding