CmaCh02G008270 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G008270
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionzinc finger protein ZAT11-like
LocationCma_Chr02: 4850602 .. 4851069 (-)
RNA-Seq ExpressionCmaCh02G008270
SyntenyCmaCh02G008270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGAGTGAGATTTGAATCTGAAATTGACTCATTACTGATGGCTGATTGCTTGATTTCCTTGTCCAAATCCAAAACGGAGTCATTTCGCCGCCGAGTTTTTGTCTGCAAGACTTGTAATCGGGAGTTTTCCTCGTTTCAAGCTCTCGGCGGCCACAGAGCTTCTCACCGGAAACCGAAATTTCCAAGCGATACTTCACACAATAACGCGATTAAGTCCAAGACTCATGAGTGCTCCATTTGTGGACTTGAGTTTCCGGTCGGTCAGGCGCTCGGAGGCCATATGCGCCGACATCGGAATTCTTCTCCCGTCCCTGTTAGTTTGACGCCGGCCCAACCTGTCTCCGATGACTCTGATTGCGACAGTGGCAACGGAGTCGTCGGAATGGATTTGAATTTGACGCCGTTGGAGAATGATCTTGTCCGGTTGCAGTTGATGGCTCCGCCGGTCGGTTGCTTGACGTAA

mRNA sequence

ATGAAGAGAGTGAGATTTGAATCTGAAATTGACTCATTACTGATGGCTGATTGCTTGATTTCCTTGTCCAAATCCAAAACGGAGTCATTTCGCCGCCGAGTTTTTGTCTGCAAGACTTGTAATCGGGAGTTTTCCTCGTTTCAAGCTCTCGGCGGCCACAGAGCTTCTCACCGGAAACCGAAATTTCCAAGCGATACTTCACACAATAACGCGATTAAGTCCAAGACTCATGAGTGCTCCATTTGTGGACTTGAGTTTCCGGTCGGTCAGGCGCTCGGAGGCCATATGCGCCGACATCGGAATTCTTCTCCCGTCCCTGTTAGTTTGACGCCGGCCCAACCTGTCTCCGATGACTCTGATTGCGACAGTGGCAACGGAGTCGTCGGAATGGATTTGAATTTGACGCCGTTGGAGAATGATCTTGTCCGGTTGCAGTTGATGGCTCCGCCGGTCGGTTGCTTGACGTAA

Coding sequence (CDS)

ATGAAGAGAGTGAGATTTGAATCTGAAATTGACTCATTACTGATGGCTGATTGCTTGATTTCCTTGTCCAAATCCAAAACGGAGTCATTTCGCCGCCGAGTTTTTGTCTGCAAGACTTGTAATCGGGAGTTTTCCTCGTTTCAAGCTCTCGGCGGCCACAGAGCTTCTCACCGGAAACCGAAATTTCCAAGCGATACTTCACACAATAACGCGATTAAGTCCAAGACTCATGAGTGCTCCATTTGTGGACTTGAGTTTCCGGTCGGTCAGGCGCTCGGAGGCCATATGCGCCGACATCGGAATTCTTCTCCCGTCCCTGTTAGTTTGACGCCGGCCCAACCTGTCTCCGATGACTCTGATTGCGACAGTGGCAACGGAGTCGTCGGAATGGATTTGAATTTGACGCCGTTGGAGAATGATCTTGTCCGGTTGCAGTTGATGGCTCCGCCGGTCGGTTGCTTGACGTAA

Protein sequence

MKRVRFESEIDSLLMADCLISLSKSKTESFRRRVFVCKTCNREFSSFQALGGHRASHRKPKFPSDTSHNNAIKSKTHECSICGLEFPVGQALGGHMRRHRNSSPVPVSLTPAQPVSDDSDCDSGNGVVGMDLNLTPLENDLVRLQLMAPPVGCLT
Homology
BLAST of CmaCh02G008270 vs. ExPASy Swiss-Prot
Match: Q9SLD4 (Zinc finger protein ZAT11 OS=Arabidopsis thaliana OX=3702 GN=ZAT11 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.9e-28
Identity = 76/162 (46.91%), Postives = 95/162 (58.64%), Query Frame = 0

Query: 1   MKRVR--FESEIDSLLMADCLISLSKSK----------TESFRRRVFVCKTCNREFSSFQ 60
           MKR R  FE  + ++ +A CL+ L+++           TES     F CKTCN+ FSSFQ
Sbjct: 1   MKRERSDFEESLKNIDIAKCLMILAQTSMVKQIGLNQHTESHTSNQFECKTCNKRFSSFQ 60

Query: 61  ALGGHRASHRKPKF---PSDTSH--NNAIKSKTHECSICGLEFPVGQALGGHMRRHRNSS 120
           ALGGHRASH+KPK      D  H  N+   +  H+CSIC   F  GQALGGHMRRHR+S 
Sbjct: 61  ALGGHRASHKKPKLTVEQKDVKHLSNDYKGNHFHKCSICSQSFGTGQALGGHMRRHRSSM 120

Query: 121 PVPVS----LTPAQPVSDDSDCDSGNGVVGMDLNLTPLENDL 142
            V  S    + P+ PV     C S   ++ +DLNLTPLENDL
Sbjct: 121 TVEPSFISPMIPSMPVL--KRCGSSKRILSLDLNLTPLENDL 160

BLAST of CmaCh02G008270 vs. ExPASy Swiss-Prot
Match: Q42410 (Zinc finger protein ZAT12 OS=Arabidopsis thaliana OX=3702 GN=ZAT12 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.9e-25
Identity = 69/153 (45.10%), Postives = 95/153 (62.09%), Query Frame = 0

Query: 8   SEIDS---LLMADCLISLSKSKTESF----RRRVFVCKTCNREFSSFQALGGHRASHRKP 67
           SEI S   +  A+CL+ LS+   E+     ++RVF CKTC ++F SFQALGGHRASH+KP
Sbjct: 5   SEIKSTVDVTAANCLMLLSRVGQENVDGGDQKRVFTCKTCLKQFHSFQALGGHRASHKKP 64

Query: 68  KFPSDTSH-NNAIKSKTHECSICGLEFPVGQALGGHMRRHRNSSP------VPVSLTPAQ 127
              + +S     +K+ +H C ICG+EFP+GQALGGHMRRHRN S       V  +L P  
Sbjct: 65  NNDALSSGLMKKVKTSSHPCPICGVEFPMGQALGGHMRRHRNESGAAGGALVTRALLPEP 124

Query: 128 PVSDDSDCDSGNGVVGMDLNLTPLENDLVRLQL 147
            V+      SG  V  +DL+L  ++N  ++L+L
Sbjct: 125 TVTTLKKSSSGKRVACLDLSLGMVDNLNLKLEL 157

BLAST of CmaCh02G008270 vs. ExPASy Swiss-Prot
Match: Q9LFG0 (Zinc finger protein ZAT18 OS=Arabidopsis thaliana OX=3702 GN=ZAT18 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.4e-23
Identity = 69/161 (42.86%), Postives = 91/161 (56.52%), Query Frame = 0

Query: 1   MKRVR--FESEIDSLLMADCLISLSKS------------KTESFRRRVFVCKTCNREFSS 60
           MKR R  +E  +  + + + L+ LS+S             +++     F CKTCNR+F S
Sbjct: 1   MKRDRSDYEESMKHIDIVESLMMLSRSFVVKQIDVKQSTGSKTNHNNHFECKTCNRKFDS 60

Query: 61  FQALGGHRASHRKPKFPSD---TSHNNAIKSKTHECSICGLEFPVGQALGGHMRRHRNSS 120
           FQALGGHRASH+KPK   D     H N  ++  H+C+IC   F  GQALGGHMR+HR S 
Sbjct: 61  FQALGGHRASHKKPKLIVDQEQVKHRNK-ENDMHKCTICDQMFGTGQALGGHMRKHRTSM 120

Query: 121 PVPVSLTPAQPVSDD--SDCDSGNGVVGMDLNLTPLENDLV 143
               S+ P+   S    + C S   +  +DLNLTPLENDLV
Sbjct: 121 ITEQSIVPSVVYSRPVFNRCSSSKEI--LDLNLTPLENDLV 158

BLAST of CmaCh02G008270 vs. ExPASy Swiss-Prot
Match: Q9LX85 (Zinc finger protein ZAT8 OS=Arabidopsis thaliana OX=3702 GN=ZAT8 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-20
Identity = 57/111 (51.35%), Postives = 70/111 (63.06%), Query Frame = 0

Query: 7   ESEIDSLLMADCLISLSK--SKTESFRRRVFVCKTCNREFSSFQALGGHRASHRKPKFPS 66
           E EI     A CL+ LS+         +RVF CKTC +EFSSFQALGGHRASH+K    S
Sbjct: 7   EVEIVEDTAAKCLMLLSRVGECGGGGEKRVFRCKTCLKEFSSFQALGGHRASHKKLINSS 66

Query: 67  DTSHNNAIKSK------THECSICGLEFPVGQALGGHMRRHRNSSPVPVSL 110
           D S   ++ +K      +H C ICG+EFP+GQALGGHMRRHR+    P +L
Sbjct: 67  DPSLLGSLSNKKTKTATSHPCPICGVEFPMGQALGGHMRRHRSEKASPGTL 117

BLAST of CmaCh02G008270 vs. ExPASy Swiss-Prot
Match: Q42453 (Zinc finger protein ZAT7 OS=Arabidopsis thaliana OX=3702 GN=ZAT7 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-19
Identity = 57/116 (49.14%), Postives = 72/116 (62.07%), Query Frame = 0

Query: 33  RVFVCKTCNREFSSFQALGGHRASHRKPKFPSDTSHNNAIKSK----THECSICGLEFPV 92
           RVF CKTC +EFSSFQALGGHRASH+K     + S   ++ +K    +H C ICG++FP+
Sbjct: 38  RVFRCKTCLKEFSSFQALGGHRASHKKLINSDNPSLLGSLSNKKTKTSHPCPICGVKFPM 97

Query: 93  GQALGGHMRRHRN----SSPVPVSLTP-AQPVSDDSDCDSGNGVVGMDLNLTPLEN 140
           GQALGGHMRRHRN     S V  S  P    V+      SG  V  +DL+L  +E+
Sbjct: 98  GQALGGHMRRHRNEKVSGSLVTRSFLPETTTVTALKKFSSGKRVACLDLDLDSMES 153

BLAST of CmaCh02G008270 vs. TAIR 10
Match: AT2G37430.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 125.9 bits (315), Expect = 2.7e-29
Identity = 76/162 (46.91%), Postives = 95/162 (58.64%), Query Frame = 0

Query: 1   MKRVR--FESEIDSLLMADCLISLSKSK----------TESFRRRVFVCKTCNREFSSFQ 60
           MKR R  FE  + ++ +A CL+ L+++           TES     F CKTCN+ FSSFQ
Sbjct: 1   MKRERSDFEESLKNIDIAKCLMILAQTSMVKQIGLNQHTESHTSNQFECKTCNKRFSSFQ 60

Query: 61  ALGGHRASHRKPKF---PSDTSH--NNAIKSKTHECSICGLEFPVGQALGGHMRRHRNSS 120
           ALGGHRASH+KPK      D  H  N+   +  H+CSIC   F  GQALGGHMRRHR+S 
Sbjct: 61  ALGGHRASHKKPKLTVEQKDVKHLSNDYKGNHFHKCSICSQSFGTGQALGGHMRRHRSSM 120

Query: 121 PVPVS----LTPAQPVSDDSDCDSGNGVVGMDLNLTPLENDL 142
            V  S    + P+ PV     C S   ++ +DLNLTPLENDL
Sbjct: 121 TVEPSFISPMIPSMPVL--KRCGSSKRILSLDLNLTPLENDL 160

BLAST of CmaCh02G008270 vs. TAIR 10
Match: AT2G28710.1 (C2H2-type zinc finger family protein )

HSP 1 Score: 125.9 bits (315), Expect = 2.7e-29
Identity = 76/152 (50.00%), Postives = 94/152 (61.84%), Query Frame = 0

Query: 1   MKRVRFESEIDSLLMADCLISLSKSKTESFRRRVFVCKTCNREFSSFQALGGHRASHRKP 60
           M+R R + E+ +  MA+CLI LSK+     + RVF CKTCN+EF SFQALGGHRASHR+ 
Sbjct: 1   MERGRSDMEMIN-NMANCLILLSKAHQNDTKSRVFACKTCNKEFPSFQALGGHRASHRRS 60

Query: 61  KFPSDTS--HNNAIKSKTHECSICGLEFPVGQALGGHMRRHRNSS--PVPVSLTPAQPVS 120
                 +      +K   HEC ICG EF VGQALGGHMR+HR  S      SL PA    
Sbjct: 61  AALEGHAPPSPKRVKPVKHECPICGAEFAVGQALGGHMRKHRGGSGGGGGRSLAPATAPV 120

Query: 121 DDSDCDSGNG--VVGMDLNLTPLENDLVRLQL 147
                  GNG  V+ +DLNLTPLEN+ ++L+L
Sbjct: 121 TMKKSGGGNGKRVLCLDLNLTPLENEDLKLEL 151

BLAST of CmaCh02G008270 vs. TAIR 10
Match: AT5G59820.1 (C2H2-type zinc finger family protein )

HSP 1 Score: 114.8 bits (286), Expect = 6.3e-26
Identity = 69/153 (45.10%), Postives = 95/153 (62.09%), Query Frame = 0

Query: 8   SEIDS---LLMADCLISLSKSKTESF----RRRVFVCKTCNREFSSFQALGGHRASHRKP 67
           SEI S   +  A+CL+ LS+   E+     ++RVF CKTC ++F SFQALGGHRASH+KP
Sbjct: 5   SEIKSTVDVTAANCLMLLSRVGQENVDGGDQKRVFTCKTCLKQFHSFQALGGHRASHKKP 64

Query: 68  KFPSDTSH-NNAIKSKTHECSICGLEFPVGQALGGHMRRHRNSSP------VPVSLTPAQ 127
              + +S     +K+ +H C ICG+EFP+GQALGGHMRRHRN S       V  +L P  
Sbjct: 65  NNDALSSGLMKKVKTSSHPCPICGVEFPMGQALGGHMRRHRNESGAAGGALVTRALLPEP 124

Query: 128 PVSDDSDCDSGNGVVGMDLNLTPLENDLVRLQL 147
            V+      SG  V  +DL+L  ++N  ++L+L
Sbjct: 125 TVTTLKKSSSGKRVACLDLSLGMVDNLNLKLEL 157

BLAST of CmaCh02G008270 vs. TAIR 10
Match: AT3G53600.1 (C2H2-type zinc finger family protein )

HSP 1 Score: 108.6 bits (270), Expect = 4.5e-24
Identity = 69/161 (42.86%), Postives = 91/161 (56.52%), Query Frame = 0

Query: 1   MKRVR--FESEIDSLLMADCLISLSKS------------KTESFRRRVFVCKTCNREFSS 60
           MKR R  +E  +  + + + L+ LS+S             +++     F CKTCNR+F S
Sbjct: 1   MKRDRSDYEESMKHIDIVESLMMLSRSFVVKQIDVKQSTGSKTNHNNHFECKTCNRKFDS 60

Query: 61  FQALGGHRASHRKPKFPSD---TSHNNAIKSKTHECSICGLEFPVGQALGGHMRRHRNSS 120
           FQALGGHRASH+KPK   D     H N  ++  H+C+IC   F  GQALGGHMR+HR S 
Sbjct: 61  FQALGGHRASHKKPKLIVDQEQVKHRNK-ENDMHKCTICDQMFGTGQALGGHMRKHRTSM 120

Query: 121 PVPVSLTPAQPVSDD--SDCDSGNGVVGMDLNLTPLENDLV 143
               S+ P+   S    + C S   +  +DLNLTPLENDLV
Sbjct: 121 ITEQSIVPSVVYSRPVFNRCSSSKEI--LDLNLTPLENDLV 158

BLAST of CmaCh02G008270 vs. TAIR 10
Match: AT3G46070.1 (C2H2-type zinc finger family protein )

HSP 1 Score: 100.9 bits (250), Expect = 9.4e-22
Identity = 63/142 (44.37%), Postives = 80/142 (56.34%), Query Frame = 0

Query: 16  ADCLISLSK-SKTESFRRRVFVCKTCNREFSSFQALGGHRASHRKPKFPSDTSHNNAIKS 75
           A CL+ LS   + +  ++RVF CKTC R+F SFQALGGHRASH K     D S   + K 
Sbjct: 16  ASCLMLLSGIGEHDGRKKRVFRCKTCERDFDSFQALGGHRASHSKLTNSDDKSLPGSPKK 75

Query: 76  K--------THECSICGLEFPVGQALGGHMRRHRN------SSPVPVS---LTPAQPVSD 135
           K         H C ICGLEFP+GQALGGHMR+HRN      +S V V+   +     V+ 
Sbjct: 76  KPKTTTTTTAHTCPICGLEFPMGQALGGHMRKHRNEKEREKASNVLVTHSFMPETTTVTT 135

Query: 136 DSDCDSGNGVVGMDLNLTPLEN 140
                SG  V  +D +LT +E+
Sbjct: 136 LKKSSSGKRVACLDFDLTSVES 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SLD43.9e-2846.91Zinc finger protein ZAT11 OS=Arabidopsis thaliana OX=3702 GN=ZAT11 PE=2 SV=1[more]
Q424108.9e-2545.10Zinc finger protein ZAT12 OS=Arabidopsis thaliana OX=3702 GN=ZAT12 PE=2 SV=1[more]
Q9LFG06.4e-2342.86Zinc finger protein ZAT18 OS=Arabidopsis thaliana OX=3702 GN=ZAT18 PE=2 SV=1[more]
Q9LX851.7e-2051.35Zinc finger protein ZAT8 OS=Arabidopsis thaliana OX=3702 GN=ZAT8 PE=2 SV=1[more]
Q424531.9e-1949.14Zinc finger protein ZAT7 OS=Arabidopsis thaliana OX=3702 GN=ZAT7 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT2G37430.12.7e-2946.91C2H2 and C2HC zinc fingers superfamily protein [more]
AT2G28710.12.7e-2950.00C2H2-type zinc finger family protein [more]
AT5G59820.16.3e-2645.10C2H2-type zinc finger family protein [more]
AT3G53600.14.5e-2442.86C2H2-type zinc finger family protein [more]
AT3G46070.19.4e-2244.37C2H2-type zinc finger family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 35..57
e-value: 0.24
score: 20.5
coord: 77..99
e-value: 0.14
score: 21.3
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 79..99
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 37..57
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 35..62
score: 9.951263
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 77..104
score: 10.491625
NoneNo IPR availablePFAMPF13912zf-C2H2_6coord: 34..59
e-value: 9.1E-13
score: 47.9
coord: 77..100
e-value: 2.9E-10
score: 39.9
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 32..99
e-value: 5.2E-9
score: 38.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..120
NoneNo IPR availablePANTHERPTHR26374:SF352CYS2-HIS2 ZINC FINGER TRANSCRIPTION FACTORcoord: 8..147
NoneNo IPR availablePANTHERPTHR26374ZINC FINGER PROTEIN ZAT5coord: 8..147
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 33..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G008270.1CmaCh02G008270.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010200 response to chitin