CmaCh02G008220 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G008220
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Histone H2B
Location	Cma_Chr02: 4836632 .. 4837075 (-)
RNA-Seq Expression	CmaCh02G008220
Synteny	CmaCh02G008220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCAAAAGCCGAGAAGAAACCCGCCGAGAAGAAGCCGGTGGAAGAGAAGAAGGCCGTAGTCGAGAAAGCCCCAGCGGAGAAGAAGCCAAAGGCTGGGAAGAAGTTGCCGAAGGAAGGTGTTGCGGCTGCCGTTGACAAGAAGAAGAAGAGATCGAAGAAAAGTATTGAGACATACAAGATCTACATCTTCAAGGTGCTGAAGCAAGTTCATCCAGACATCGGAATCTCCAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATTTTCGAGAAACTGGCTCAGGAGTCTTCTAAGTTGGCTCGCTACAACAAGAAGCCGACCATCACTTCCAGGGAGATTCAGACTGCTGTGCGACTTGTTCTTCCTGGTGAATTGGCCAAGCACGCCGTTTCTGAAGGTACCAAGGCGGTTACGAAATTCACTAGTTCCTAA

mRNA sequence

ATGGCGCCAAAAGCCGAGAAGAAACCCGCCGAGAAGAAGCCGGTGGAAGAGAAGAAGGCCGTAGTCGAGAAAGCCCCAGCGGAGAAGAAGCCAAAGGCTGGGAAGAAGTTGCCGAAGGAAGGTGTTGCGGCTGCCGTTGACAAGAAGAAGAAGAGATCGAAGAAAAGTATTGAGACATACAAGATCTACATCTTCAAGGTGCTGAAGCAAGTTCATCCAGACATCGGAATCTCCAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATTTTCGAGAAACTGGCTCAGGAGTCTTCTAAGTTGGCTCGCTACAACAAGAAGCCGACCATCACTTCCAGGGAGATTCAGACTGCTGTGCGACTTGTTCTTCCTGGTGAATTGGCCAAGCACGCCGTTTCTGAAGGTACCAAGGCGGTTACGAAATTCACTAGTTCCTAA

Coding sequence (CDS)

ATGGCGCCAAAAGCCGAGAAGAAACCCGCCGAGAAGAAGCCGGTGGAAGAGAAGAAGGCCGTAGTCGAGAAAGCCCCAGCGGAGAAGAAGCCAAAGGCTGGGAAGAAGTTGCCGAAGGAAGGTGTTGCGGCTGCCGTTGACAAGAAGAAGAAGAGATCGAAGAAAAGTATTGAGACATACAAGATCTACATCTTCAAGGTGCTGAAGCAAGTTCATCCAGACATCGGAATCTCCAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATTTTCGAGAAACTGGCTCAGGAGTCTTCTAAGTTGGCTCGCTACAACAAGAAGCCGACCATCACTTCCAGGGAGATTCAGACTGCTGTGCGACTTGTTCTTCCTGGTGAATTGGCCAAGCACGCCGTTTCTGAAGGTACCAAGGCGGTTACGAAATTCACTAGTTCCTAA

Protein sequence

MAPKAEKKPAEKKPVEEKKAVVEKAPAEKKPKAGKKLPKEGVAAAVDKKKKRSKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

[Close]

BLAST of CmaCh02G008220 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-65
Identity = 139/147 (94.56%), Postives = 142/147 (96.60%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKAVVEKAPAEKKPKAGKKLPKEGVAAAVDKKKKRSKKSIETY 60
           MAPKAEKKPAEKKP EEKKAV EKAPAEKKPKAGKKLPKEG AAA DKKKKR KKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of CmaCh02G008220 vs. ExPASy Swiss-Prot
Match: Q1S9I9 (Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 243.8 bits (621), Expect = 1.2e-63
Identity = 137/148 (92.57%), Postives = 142/148 (95.95%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKA-VVEKAPAEKKPKAGKKLPKEGVAAAVDKKKKRSKKSIET 60
           MAPK EKKPAEKKP EEKK+ V EKAPAEKKPKAGKKLPKEG +AA +KKKKRSKKS+ET
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of CmaCh02G008220 vs. ExPASy Swiss-Prot
Match: Q1SWQ1 (Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 240.0 bits (611), Expect = 1.7e-62
Identity = 135/148 (91.22%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKA-VVEKAPAEKKPKAGKKLPKEGVAAAVDKKKKRSKKSIET 60
           MAPK EKKPAEKKP EEKK+ V EKAPAEKKPKAGKKLPKEG +AA +KKKKRSKKS+ET
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QESS+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           AVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHDVSEGTKAVTKFTSS 148

[Close]

BLAST of CmaCh02G008220 vs. ExPASy Swiss-Prot
Match: Q9SI96 (Histone H2B.3 OS=Arabidopsis thaliana OX=3702 GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 233.4 bits (594), Expect = 1.6e-60
Identity = 133/151 (88.08%), Postives = 137/151 (90.73%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVE----EKKAVVEKAPAEKKPKAGKKLPKEGVAAAVDKKKKRSKKS 60
           MAPKA KKPAEKKP E    E++ V EKAPAEKKPKAGKKLPKE V   V+KKKKR KKS
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of CmaCh02G008220 vs. ExPASy Swiss-Prot
Match: Q9LZT0 (Histone H2B.7 OS=Arabidopsis thaliana OX=3702 GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 232.3 bits (591), Expect = 3.6e-60
Identity = 134/147 (91.16%), Postives = 136/147 (92.52%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKAVVEKAPAEKKPKAGKKLPKEGVAAAVDKKKKRSKKSIETY 60
           MAPKAEKKPAEKKPVEE K+  EKAPAEKKPKAGKKLPKE   A  DKKKK  KKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPVEE-KSKAEKAPAEKKPKAGKKLPKE-AGAGGDKKKKMKKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of CmaCh02G008220 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 233.4 bits (594), Expect = 1.2e-61
Identity = 133/151 (88.08%), Postives = 137/151 (90.73%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVE----EKKAVVEKAPAEKKPKAGKKLPKEGVAAAVDKKKKRSKKS 60
           MAPKA KKPAEKKP E    E++ V EKAPAEKKPKAGKKLPKE V   V+KKKKR KKS
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of CmaCh02G008220 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 232.3 bits (591), Expect = 2.6e-61
Identity = 134/147 (91.16%), Postives = 136/147 (92.52%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKAVVEKAPAEKKPKAGKKLPKEGVAAAVDKKKKRSKKSIETY 60
           MAPKAEKKPAEKKPVEE K+  EKAPAEKKPKAGKKLPKE   A  DKKKK  KKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPVEE-KSKAEKAPAEKKPKAGKKLPKE-AGAGGDKKKKMKKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of CmaCh02G008220 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 229.9 bits (585), Expect = 1.3e-60
Identity = 133/151 (88.08%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEK----KAVVEKAPAEKKPKAGKKLPKEGVAAAVDKKKKRSKKS 60
           MAPKAEKKPAEKKP  EK    K+  EKAPAEKKPKAGKKLPKE   A  DKKKK  KKS
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKE-AGAGGDKKKKMKKKS 60

Query: 61  IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
           +ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CmaCh02G008220 vs. TAIR 10
Match: AT3G45980.1 (Histone superfamily protein )

HSP 1 Score: 227.6 bits (579), Expect = 6.3e-60
Identity = 132/151 (87.42%), Postives = 135/151 (89.40%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEK----KAVVEKAPAEKKPKAGKKLPKEGVAAAVDKKKKRSKKS 60
           MAP+AEKKPAEKKP  EK    K+  EKAPAEKKPKAGKKLPKE   A  DKKKK  KKS
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKE-AGAGGDKKKKMKKKS 60

Query: 61  IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
           +ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CmaCh02G008220 vs. TAIR 10
Match: AT1G07790.1 (Histone superfamily protein )

HSP 1 Score: 225.7 bits (574), Expect = 2.4e-59
Identity = 134/152 (88.16%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MAPKAEKKPAEKK-----PVEEKKAVVEKAPAEKKPKAGKKLPKEGVAAAVDKKKKRSKK 60
           MAP+AEKKPAEKK     PVEE KA  EKAPAEKKPKAGKKLP +    A DKKKKRSKK
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKA-AEKAPAEKKPKAGKKLPPK---EAGDKKKKRSKK 60

Query: 61  SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           ++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

The following BLAST results are available for this feature:

BLAST of CmaCh02G008220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22582	1.3e-65	94.56	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]
Q1S9I9	1.2e-63	92.57	Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
Q1SWQ1	1.7e-62	91.22	Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
Q9SI96	1.6e-60	88.08	Histone H2B.3 OS=Arabidopsis thaliana OX=3702 GN=At2g28720 PE=1 SV=3	[more]
Q9LZT0	3.6e-60	91.16	Histone H2B.7 OS=Arabidopsis thaliana OX=3702 GN=At3g46030 PE=1 SV=3	[more]

BLAST of CmaCh02G008220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28720.1	1.2e-61	88.08	Histone superfamily protein	[more]
AT3G46030.1	2.6e-61	91.16	Histone superfamily protein	[more]
AT5G59910.1	1.3e-60	88.08	Histone superfamily protein	[more]
AT3G45980.1	6.3e-60	87.42	Histone superfamily protein	[more]
AT1G07790.1	2.4e-59	88.16	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 60..78 score: 80.55 coord: 131..144 score: 92.65 coord: 118..131 score: 92.45 coord: 101..118 score: 76.51 coord: 79..99 score: 75.74
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 50..146 e-value: 6.3E-73 score: 258.3
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 5..147
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 115..137
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 3..123 e-value: 1.8E-23 score: 83.3
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 1..147 e-value: 2.5E-57 score: 194.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 31..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	PANTHER	PTHR23428:SF282	HISTONE H2B	coord: 5..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G008220.1	CmaCh02G008220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity