CmaCh02G008100 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G008100
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RING-type E3 ubiquitin transferase
Location	Cma_Chr02: 4791084 .. 4792597 (+)
RNA-Seq Expression	CmaCh02G008100
Synteny	CmaCh02G008100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATATGAATCAGGCGCTGCCGAATGATACCGTGAGAGCTCTCGCGTCGTTTAAGGAAGCTCTGGATTCGACCAAGGAGTTGCTTAGACTTGGGAGCGAGGGGAGCTAGATTTGTCTGGTGCGTTTACTCCATTGTTTGTGTGCTTTCTGTTTAAACGCTGTCTGTTCTGCCTTGCAATGTTGTGAATTGATGAATTTCGTTCCGATTCCGTGTTGAATCTTTAATTGTTTCGGATGTCTATTTGGCAAAGTGGAAAATTAAAAAAAAAATTATCGCAGATTATCGGCTATTGTGATTTTCAGAGCCTACTTTCGCTTCCATTTGTATCCGCAACAAAACATTTTGCTTAGGCTATAAACAATGTTTCGATGGACATCCTCCGGTTCAACACACTTTGCTGACGCCTTCAATTCGATTAGACGACATTCGCATTGCAGCTGTTATCTCGTACTTGCACCTTGTATTAGTTTACGTATGATGCCGATTACAATGTGATTCACGATTTCTCTAGATTTTACTCGTATGTAATCTAAACTTGGAATTTTGTTTTGTGTGATGATATGAATTAGGTTCTGTCTAAATTTCTGCCTTTATTCTCAATTGATCATCATGATTTTGGATTGGGAAAATGAATGTGAGACAAATCTCGGCAGCCGATCAGATTATTTCTCTTTTTATGCTCTATATATTGTTTTTGTTCTAATCTTTTTTTTTTATTCGAACTTCAGGCCTTGGAGAAAGAGCAAAATTTGAATCAATTTCACAGGATGACAGCAAGACTAGAGAAAGCTCTGAATGAAATTTCACATGAAGATCTTGATATATCTGATGAAGTTAAGGAGCAGGTAAAGGATTTTATCATTGCGCTTTTTGTTCTTAATATCTTTGAAATGGTTTTCTAGCTGCTCTCGACTGTTGAAAGATTATAACTTAGAAATCTTTATCGATTGAATTCTGTGCCATGGAAGTAGAAGGTAAAGAATTAGGGTATTAGGGTATAGCTTCAGACTTTCTATCAAGAGACCTGATAGTTTAAAGTATTCTGAGGTTTGAATAAGCTATTAATGTTTTATACCGTTGTTTGCATATCTAAGTCTTCCCGAGTCCAGGTTGAGGTTGTTCTCTCTCAATTCAAAAGAGCTAAAGGAAGGTTTGATACACAAGATGCCGTGCTGTATGTTAACCACCACTCTCTCTATAACAACAGCAAAGCGTCTGTACTGAACCTTCTGTCTTTATGGGATTGGCTGAGAAGTTGGAGCTAATGGATATAGCTGATCTTACTCGAGAGTCTCTCGCTTTACATGGAACCGTTTCAGCTAGCAATGGAGATCCAGGGGAGAAATTTGAGAAAATGTCAATTCTATTGAAGAAATCGTGTGGGGCCTTTGCTGAAGCTGGTGCAATCCCTCCCCTTGTTGGCCTCCTTTCAACAACGAACCTCCTCACTCAAGAACAGGCTGTGACAATAATAAGAGAAGTATCATGTCCTGCAGGACAGCACCTGGCATAG

mRNA sequence

GGATATGAATCAGGCGCTGCCGAATGATACCGTGAGAGCTCTCGCGTCGTTTAAGGAAGCTCTGGATTCGACCAAGGAGTTGCTTAGACTTGGGAGCGAGGGGAGCTAGATTTGTCTGGCCTTGGAGAAAGAGCAAAATTTGAATCAATTTCACAGGATGACAGCAAGACTAGAGAAAGCTCTGAATGAAATTTCACATGAAGATCTTGATATATCTGATGAAGTTAAGGAGCAGTCTTCCCGAGTCCAGGTTGAGCAAAGCGTCTGTACTGAACCTTCTGTCTTTATGGGATTGGCTGAGAAGTTGGAGCTAATGGATATAGCTGATCTTACTCGAGAGTCTCTCGCTTTACATGGAACCGTTTCAGCTAGCAATGGAGATCCAGGGGAGAAATTTGAGAAAATGTCAATTCTATTGAAGAAATCGTGTGGGGCCTTTGCTGAAGCTGGTGCAATCCCTCCCCTTGTTGGCCTCCTTTCAACAACGAACCTCCTCACTCAAGAACAGGCTGTGACAATAATAAGAGAAGTATCATGTCCTGCAGGACAGCACCTGGCATAG

Coding sequence (CDS)

ATGACAGCAAGACTAGAGAAAGCTCTGAATGAAATTTCACATGAAGATCTTGATATATCTGATGAAGTTAAGGAGCAGTCTTCCCGAGTCCAGGTTGAGCAAAGCGTCTGTACTGAACCTTCTGTCTTTATGGGATTGGCTGAGAAGTTGGAGCTAATGGATATAGCTGATCTTACTCGAGAGTCTCTCGCTTTACATGGAACCGTTTCAGCTAGCAATGGAGATCCAGGGGAGAAATTTGAGAAAATGTCAATTCTATTGAAGAAATCGTGTGGGGCCTTTGCTGAAGCTGGTGCAATCCCTCCCCTTGTTGGCCTCCTTTCAACAACGAACCTCCTCACTCAAGAACAGGCTGTGACAATAATAAGAGAAGTATCATGTCCTGCAGGACAGCACCTGGCATAG

Protein sequence

MTARLEKALNEISHEDLDISDEVKEQSSRVQVEQSVCTEPSVFMGLAEKLELMDIADLTRESLALHGTVSASNGDPGEKFEKMSILLKKSCGAFAEAGAIPPLVGLLSTTNLLTQEQAVTIIREVSCPAGQHLA

Homology

[Close]

BLAST of CmaCh02G008100 vs. ExPASy Swiss-Prot
Match: Q9ZV31 (U-box domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=PUB12 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.7e-11
Identity = 49/117 (41.88%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 1   MTARLEKALNEISHEDLDISDEVKEQSSRVQVE--------------------------- 60
           +T+ LE+AL+ I +E+L+ISDE+KEQ   V V+                           
Sbjct: 104 VTSLLEQALSIIPYENLEISDELKEQVELVLVQLRRSLGKRGGDVYDDELYKDVLSLYSG 163

Query: 61  QSVCTEPSVFMGLAEKLELMDIADLTRESLALHGTVSASNG-DPGEKFEKMSILLKK 90
           +    E  +   +AEKL+LM I DLT+ESLAL   VS+S G DPGE FEKMS++LKK
Sbjct: 164 RGSVMESDMVRRVAEKLQLMTITDLTQESLALLDMVSSSGGDDPGESFEKMSMVLKK 220

[Close]

BLAST of CmaCh02G008100 vs. ExPASy Swiss-Prot
Match: Q9SNC6 (U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.8e-11
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 0


Query: 1   MTARLEKALNEISHEDLDISDEVKEQ-----------SSRVQVE--------QSVCTEPS 60
           ++ +LE++L++I +E+LDISDEV+EQ             RV V         QS+C + S
Sbjct: 104 VSVKLEQSLSQIPYEELDISDEVREQVELVLSQFRRAKGRVDVSDDELYEDLQSLCNKSS 163

Query: 61  -------VFMGLAEKLELMDIADLTRESLALHGTVSASNGDPGEKFEKMSILLK 89
                  V   +A+KL LM+I DL +ES+ALH  V++S GD GE  E+M+++LK
Sbjct: 164 DVDAYQPVLERVAKKLHLMEIPDLAQESVALHEMVASSGGDVGENIEEMAMVLK 217

[Close]

BLAST of CmaCh02G008100 vs. ExPASy Swiss-Prot
Match: A2ZLU6 (Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 4.1e-10
Identity = 56/159 (35.22%), Postives = 75/159 (47.17%), Query Frame = 0


Query: 4   RLEKALNEISHEDLDISDEVKEQSSRVQVEQSVCTE----------------------PS 63
           +LE+AL +I + +LDISDEV+EQ   V  +     E                      PS
Sbjct: 129 QLEQALCDIPYNELDISDEVREQVELVHAQLKRAKERIDMPDDEFYNDLLSVYDKNYDPS 188

Query: 64  VFMG----LAEKLELMDIADLTRESLALHGTVSASNG-DPGEKFEKMSILLK--KSCGAF 123
             +     L+EKL LM I DLT+ESLALH  V++  G DPGE  E+MS+LLK  K     
Sbjct: 189 AELAILGRLSEKLHLMTITDLTQESLALHEMVASGGGQDPGEHIERMSMLLKKIKDFVQT 248

Query: 124 AEAGAIPPLVGLLSTTNLLTQEQAVTIIREVSCPAGQHL 134
                 PP+   +  +N     + +TI  E  CP    L
Sbjct: 249 QNPDMGPPMASRVLDSN--GDSRPITIPDEFRCPISLEL 285

[Close]

BLAST of CmaCh02G008100 vs. ExPASy Swiss-Prot
Match: Q0IMG9 (E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL11 PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 4.1e-10
Identity = 56/159 (35.22%), Postives = 75/159 (47.17%), Query Frame = 0


Query: 4   RLEKALNEISHEDLDISDEVKEQSSRVQVEQSVCTE----------------------PS 63
           +LE+AL +I + +LDISDEV+EQ   V  +     E                      PS
Sbjct: 129 QLEQALCDIPYNELDISDEVREQVELVHAQLKRAKERIDMPDDEFYNDLLSVYDKNYDPS 188

Query: 64  VFMG----LAEKLELMDIADLTRESLALHGTVSASNG-DPGEKFEKMSILLK--KSCGAF 123
             +     L+EKL LM I DLT+ESLALH  V++  G DPGE  E+MS+LLK  K     
Sbjct: 189 AELAILGRLSEKLHLMTITDLTQESLALHEMVASGGGQDPGEHIERMSMLLKKIKDFVQT 248

Query: 124 AEAGAIPPLVGLLSTTNLLTQEQAVTIIREVSCPAGQHL 134
                 PP+   +  +N     + +TI  E  CP    L
Sbjct: 249 QNPDMGPPMASRVLDSN--GDSRPITIPDEFRCPISLEL 285

[Close]

BLAST of CmaCh02G008100 vs. ExPASy Swiss-Prot
Match: Q8VZ40 (U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.1e-06
Identity = 35/111 (31.53%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 1   MTARLEKALNEISHEDLDISDEVKEQ----------------SSRVQV-------EQSVC 60
           MT  +E AL++I +E +++S+EV+EQ                 S +Q+       E  + 
Sbjct: 108 MTVEIEAALSQIPYEKIEVSEEVREQVQLLHFQFKRAKERWEESDLQLSHDLAMAENVMD 167

Query: 61  TEPSVFMGLAEKLELMDIADLTRESLALHGTVSASNGDPGEKFEKMSILLK 89
            +P +   L+++L+L  I +L +ES A+H    + +GDP + FE+MS LLK
Sbjct: 168 PDPIILKRLSQELQLTTIDELKKESHAIHEYFLSYDGDPDDCFERMSSLLK 218

[Close]

BLAST of CmaCh02G008100 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-12
Identity = 49/117 (41.88%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 1   MTARLEKALNEISHEDLDISDEVKEQSSRVQVE--------------------------- 60
           +T+ LE+AL+ I +E+L+ISDE+KEQ   V V+                           
Sbjct: 104 VTSLLEQALSIIPYENLEISDELKEQVELVLVQLRRSLGKRGGDVYDDELYKDVLSLYSG 163

Query: 61  QSVCTEPSVFMGLAEKLELMDIADLTRESLALHGTVSASNG-DPGEKFEKMSILLKK 90
           +    E  +   +AEKL+LM I DLT+ESLAL   VS+S G DPGE FEKMS++LKK
Sbjct: 164 RGSVMESDMVRRVAEKLQLMTITDLTQESLALLDMVSSSGGDDPGESFEKMSMVLKK 220

[Close]

BLAST of CmaCh02G008100 vs. TAIR 10
Match: AT3G46510.1 (plant U-box 13 )

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-12
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 0


Query: 1   MTARLEKALNEISHEDLDISDEVKEQ-----------SSRVQVE--------QSVCTEPS 60
           ++ +LE++L++I +E+LDISDEV+EQ             RV V         QS+C + S
Sbjct: 104 VSVKLEQSLSQIPYEELDISDEVREQVELVLSQFRRAKGRVDVSDDELYEDLQSLCNKSS 163

Query: 61  -------VFMGLAEKLELMDIADLTRESLALHGTVSASNGDPGEKFEKMSILLK 89
                  V   +A+KL LM+I DL +ES+ALH  V++S GD GE  E+M+++LK
Sbjct: 164 DVDAYQPVLERVAKKLHLMEIPDLAQESVALHEMVASSGGDVGENIEEMAMVLK 217

HSP 2 Score: 37.0 bits (84), Expect = 1.4e-02
Identity = 20/34 (58.82%), Postives = 24/34 (70.59%), Query Frame = 0


Query: 93  AFAEAGAIPPLVGLLSTTNLLTQEQAVTIIREVS 127
           A AEAGAIP LVGLLST +   QE +VT +  +S
Sbjct: 389 AIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLS 422

[Close]

BLAST of CmaCh02G008100 vs. TAIR 10
Match: AT3G54850.1 (plant U-box 14 )

HSP 1 Score: 52.0 bits (123), Expect = 4.3e-07
Identity = 35/111 (31.53%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 1   MTARLEKALNEISHEDLDISDEVKEQ----------------SSRVQV-------EQSVC 60
           MT  +E AL++I +E +++S+EV+EQ                 S +Q+       E  + 
Sbjct: 108 MTVEIEAALSQIPYEKIEVSEEVREQVQLLHFQFKRAKERWEESDLQLSHDLAMAENVMD 167

Query: 61  TEPSVFMGLAEKLELMDIADLTRESLALHGTVSASNGDPGEKFEKMSILLK 89
            +P +   L+++L+L  I +L +ES A+H    + +GDP + FE+MS LLK
Sbjct: 168 PDPIILKRLSQELQLTTIDELKKESHAIHEYFLSYDGDPDDCFERMSSLLK 218

The following BLAST results are available for this feature:

BLAST of CmaCh02G008100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZV31	3.7e-11	41.88	U-box domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=PUB12 PE=2...	[more]
Q9SNC6	4.8e-11	39.47	U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1...	[more]
A2ZLU6	4.1e-10	35.22	Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=...	[more]
Q0IMG9	4.1e-10	35.22	E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica OX=39947 GN=SP...	[more]
Q8VZ40	6.1e-06	31.53	U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1...	[more]

BLAST of CmaCh02G008100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28830.1	2.6e-12	41.88	PLANT U-BOX 12	[more]
AT3G46510.1	3.4e-12	39.47	plant U-box 13	[more]
AT3G54850.1	4.3e-07	31.53	plant U-box 14	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 15..134 e-value: 9.5E-6 score: 26.5
IPR000225	Armadillo	PFAM	PF00514	Arm	coord: 96..123 e-value: 3.8E-5 score: 23.6
None	No IPR available	PANTHER	PTHR23315	U BOX DOMAIN-CONTAINING	coord: 38..89
None	No IPR available	PANTHER	PTHR23315	U BOX DOMAIN-CONTAINING	coord: 94..126
None	No IPR available	PANTHER	PTHR23315:SF236	E3 UBIQUITIN-PROTEIN LIGASE SPL11	coord: 94..126 coord: 38..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G008100.1	CmaCh02G008100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005622	intracellular anatomical structure
molecular_function	GO:0005515	protein binding