CmaCh02G007900 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G007900
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	vitellogenin-1-like
Location	Cma_Chr02: 4687225 .. 4687542 (-)
RNA-Seq Expression	CmaCh02G007900
Synteny	CmaCh02G007900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAAAATGGAAGCTTTCCAGAAAGGAATCTTCTTCTTCTTCTTCTTCTTCTTCTAAGTCCTTCTTCTCCAGAACCTCTTCCTCCAAGCTGCCATTGCTTAGAAGCTTATCCCACAAGCACACTCCCTCCGCCGCCGCCTCCTCCACCAAGTCCCCCTCCGATCTCGGCCGCAGCTCCTCCCAAAAAAACCCCTCCTCCTCCTCCATTGGCCATAAATGCAGCAGCTTGGCTAAAGAACAAAAGGCCAGATTTTACATCATGCGCCGATGTGTCGCAATGCTTGTCTGTTGGCATAAACATGGCGATCCATGA

mRNA sequence

ATGGAAGAAAAATGGAAGCTTTCCAGAAAGGAATCTTCTTCTTCTTCTTCTTCTTCTTCTAAGTCCTTCTTCTCCAGAACCTCTTCCTCCAAGCTGCCATTGCTTAGAAGCTTATCCCACAAGCACACTCCCTCCGCCGCCGCCTCCTCCACCAAGTCCCCCTCCGATCTCGGCCGCAGCTCCTCCCAAAAAAACCCCTCCTCCTCCTCCATTGGCCATAAATGCAGCAGCTTGGCTAAAGAACAAAAGGCCAGATTTTACATCATGCGCCGATGTGTCGCAATGCTTGTCTGTTGGCATAAACATGGCGATCCATGA

Coding sequence (CDS)

ATGGAAGAAAAATGGAAGCTTTCCAGAAAGGAATCTTCTTCTTCTTCTTCTTCTTCTTCTAAGTCCTTCTTCTCCAGAACCTCTTCCTCCAAGCTGCCATTGCTTAGAAGCTTATCCCACAAGCACACTCCCTCCGCCGCCGCCTCCTCCACCAAGTCCCCCTCCGATCTCGGCCGCAGCTCCTCCCAAAAAAACCCCTCCTCCTCCTCCATTGGCCATAAATGCAGCAGCTTGGCTAAAGAACAAAAGGCCAGATTTTACATCATGCGCCGATGTGTCGCAATGCTTGTCTGTTGGCATAAACATGGCGATCCATGA

Protein sequence

MEEKWKLSRKESSSSSSSSSKSFFSRTSSSKLPLLRSLSHKHTPSAAASSTKSPSDLGRSSSQKNPSSSSIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP

Homology

[Close]

BLAST of CmaCh02G007900 vs. ExPASy Swiss-Prot
Match: Q8L7D0 (Small polypeptide DEVIL 13 OS=Arabidopsis thaliana OX=3702 GN=DVL13 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.0e-20
Identity = 68/114 (59.65%), Postives = 86/114 (75.44%), Query Frame = 0


Query: 1   MEEKWKLSRKESSSSSSSS----SKSFFSRTSSSKLPL-LRSLSHKHTPSAAASSTKSPS 60
           MEEKWKLS+K++++SSSSS    S+SF +  SS+K P+ +RS S K +  +++SS+ S S
Sbjct: 1   MEEKWKLSKKDTTASSSSSKSKFSRSFSTSASSTKSPIFVRSSSTKCSVPSSSSSSSSSS 60

Query: 61  DLGRSSSQK-----NPSSSSIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGD 105
            + RS S+K     + SSSSI  K SSLAKEQKARFYIMRRCVAMLVCWHKHGD
Sbjct: 61  SISRSFSRKERRSSSSSSSSITQKYSSLAKEQKARFYIMRRCVAMLVCWHKHGD 114

[Close]

BLAST of CmaCh02G007900 vs. ExPASy Swiss-Prot
Match: Q6IM92 (Small polypeptide DEVIL 9 OS=Arabidopsis thaliana OX=3702 GN=DVL9 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.3e-15
Identity = 66/113 (58.41%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 1   MEEKWKLSRKE----SSSSSSSSSKSFFSRT-----SSSKLP-LLRSLSHK-HTPSAAAS 60
           M+EKW+LS+K+    S SSSS+SSKS FSR+     SSSK P  +RS S K   PS+++S
Sbjct: 1   MDEKWRLSKKDALAASCSSSSTSSKSKFSRSFSTSASSSKAPAFVRSSSTKCSVPSSSSS 60

Query: 61  STKSPSDLGRSSSQKNPSSSSIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKH 103
           S      + RSSS+K     SI  K SSLAKEQK RFYIMRRCVAMLVCWHKH
Sbjct: 61  S------ISRSSSKK--EKGSITQKYSSLAKEQKGRFYIMRRCVAMLVCWHKH 105

[Close]

BLAST of CmaCh02G007900 vs. ExPASy Swiss-Prot
Match: Q8LE84 (Small polypeptide DEVIL 18 OS=Arabidopsis thaliana OX=3702 GN=DVL18 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.9e-09
Identity = 52/116 (44.83%), Postives = 67/116 (57.76%), Query Frame = 0


Query: 8   SRKESSSSSSSSSKSFFSRT--------SSSKLPLLRSLSHKHTPS-----AAASSTKSP 67
           +R  S+ +SSSSSK  F+R+        SSS+    RS S K T S     + + STK P
Sbjct: 28  TRSFSTKTSSSSSKPVFTRSFSTKPTSYSSSEPIFRRSFSAKPTSSKSPFLSRSGSTKCP 87

Query: 68  SD--------LGRSSSQKNPSSSSIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKH 103
            D        + RS SQK    +S+  KC ++AKE K+RFYIM+RCV MLVCWHKH
Sbjct: 88  VDTSSTSKCSISRSLSQK---GASVTRKCRNMAKEHKSRFYIMKRCVLMLVCWHKH 140

[Close]

BLAST of CmaCh02G007900 vs. ExPASy Swiss-Prot
Match: Q6IM86 (Small polypeptide DEVIL 15 OS=Arabidopsis thaliana OX=3702 GN=DVL15 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-07
Identity = 51/99 (51.52%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 8   SRKESSSSSSSS---SKSFFSRTSSSK-LPLLRSLSHKHTPSAAASSTKSPSDLGRSSSQ 67
           S K SSSSSSS     +SF ++  +SK L L RS S   T S+A  S+KS S L R  S+
Sbjct: 52  STKPSSSSSSSDLIFRRSFSAKPKTSKSLLLSRSCS---TKSSADLSSKS-SSLSRILSK 111

Query: 68  KNPSSSSIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKH 103
           K    +S+  KC  +AKE K+RFYI++RCV MLVCWHKH
Sbjct: 112 K---GASVTGKCFKVAKEHKSRFYIIKRCVLMLVCWHKH 143

[Close]

BLAST of CmaCh02G007900 vs. ExPASy Swiss-Prot
Match: A0A5S6RB44 (Small polypeptide ROTUNDIFOLIA LIKE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RTFL3 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 44/122 (36.07%), Postives = 61/122 (50.00%), Query Frame = 0


Query: 2   EEKWKLS----RKESSSSSSSSSKSFFSRT---SSSKLPLLRSLSHKHTPS--------- 61
           +E+WKLS    R +S  S SSSS  ++  +   SS+   L RS S   T S         
Sbjct: 3   DERWKLSSSKGRSKSGRSCSSSSNYYYHSSDFNSSNATTLSRSYSASVTASRHATTAWSA 62

Query: 62  -----AAASSTKSPSDLGRSSSQKNPSSSSIGHKCSSLAKEQKARFYIMRRCVAMLVCWH 103
                  ASS+ S     +   Q++ +S  +  KC    KE +ARFYI+RRCV+MLVCW 
Sbjct: 63  AGAGGGGASSSSSSQHQHQQQQQQSNNSQRLSKKCVEAVKEHRARFYIVRRCVSMLVCWR 122

[Close]

BLAST of CmaCh02G007900 vs. TAIR 10
Match: AT2G29125.1 (ROTUNDIFOLIA like 2 )

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-21
Identity = 68/114 (59.65%), Postives = 86/114 (75.44%), Query Frame = 0


Query: 1   MEEKWKLSRKESSSSSSSS----SKSFFSRTSSSKLPL-LRSLSHKHTPSAAASSTKSPS 60
           MEEKWKLS+K++++SSSSS    S+SF +  SS+K P+ +RS S K +  +++SS+ S S
Sbjct: 1   MEEKWKLSKKDTTASSSSSKSKFSRSFSTSASSTKSPIFVRSSSTKCSVPSSSSSSSSSS 60

Query: 61  DLGRSSSQK-----NPSSSSIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGD 105
            + RS S+K     + SSSSI  K SSLAKEQKARFYIMRRCVAMLVCWHKHGD
Sbjct: 61  SISRSFSRKERRSSSSSSSSITQKYSSLAKEQKARFYIMRRCVAMLVCWHKHGD 114

[Close]

BLAST of CmaCh02G007900 vs. TAIR 10
Match: AT1G07490.1 (ROTUNDIFOLIA like 3 )

HSP 1 Score: 82.4 bits (202), Expect = 2.4e-16
Identity = 66/113 (58.41%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 1   MEEKWKLSRKE----SSSSSSSSSKSFFSRT-----SSSKLP-LLRSLSHK-HTPSAAAS 60
           M+EKW+LS+K+    S SSSS+SSKS FSR+     SSSK P  +RS S K   PS+++S
Sbjct: 1   MDEKWRLSKKDALAASCSSSSTSSKSKFSRSFSTSASSSKAPAFVRSSSTKCSVPSSSSS 60

Query: 61  STKSPSDLGRSSSQKNPSSSSIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKH 103
           S      + RSSS+K     SI  K SSLAKEQK RFYIMRRCVAMLVCWHKH
Sbjct: 61  S------ISRSSSKK--EKGSITQKYSSLAKEQKGRFYIMRRCVAMLVCWHKH 105

[Close]

BLAST of CmaCh02G007900 vs. TAIR 10
Match: AT5G59510.1 (ROTUNDIFOLIA like 5 )

HSP 1 Score: 61.2 bits (147), Expect = 5.6e-10
Identity = 52/116 (44.83%), Postives = 67/116 (57.76%), Query Frame = 0


Query: 8   SRKESSSSSSSSSKSFFSRT--------SSSKLPLLRSLSHKHTPS-----AAASSTKSP 67
           +R  S+ +SSSSSK  F+R+        SSS+    RS S K T S     + + STK P
Sbjct: 28  TRSFSTKTSSSSSKPVFTRSFSTKPTSYSSSEPIFRRSFSAKPTSSKSPFLSRSGSTKCP 87

Query: 68  SD--------LGRSSSQKNPSSSSIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKH 103
            D        + RS SQK    +S+  KC ++AKE K+RFYIM+RCV MLVCWHKH
Sbjct: 88  VDTSSTSKCSISRSLSQK---GASVTRKCRNMAKEHKSRFYIMKRCVLMLVCWHKH 140

[Close]

BLAST of CmaCh02G007900 vs. TAIR 10
Match: AT3G46613.1 (ROTUNDIFOLIA like 4 )

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-08
Identity = 51/99 (51.52%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 8   SRKESSSSSSSS---SKSFFSRTSSSK-LPLLRSLSHKHTPSAAASSTKSPSDLGRSSSQ 67
           S K SSSSSSS     +SF ++  +SK L L RS S   T S+A  S+KS S L R  S+
Sbjct: 52  STKPSSSSSSSDLIFRRSFSAKPKTSKSLLLSRSCS---TKSSADLSSKS-SSLSRILSK 111

Query: 68  KNPSSSSIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKH 103
           K    +S+  KC  +AKE K+RFYI++RCV MLVCWHKH
Sbjct: 112 K---GASVTGKCFKVAKEHKSRFYIIKRCVLMLVCWHKH 143

[Close]

BLAST of CmaCh02G007900 vs. TAIR 10
Match: AT2G39705.1 (ROTUNDIFOLIA like 8 )

HSP 1 Score: 45.8 bits (107), Expect = 2.4e-05
Identity = 34/81 (41.98%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 19  SSKSFFSRTSSSKLPLLRSLSHKHTPSAAASSTKSPSDLGRSSSQKNPSSSSIGHKCSSL 78
           +S S  +R+ S  L     LS K     A+  T+S S    S + K     +   KC+ L
Sbjct: 2   ASSSSLTRSGSVHLDEKWKLSKK--DGGASRITRSSSTSSSSFNGKKQGRCAFTRKCARL 61

Query: 79  AKEQKARFYIMRRCVAMLVCW 100
            KEQ+ARFYIMRRCV ML+CW
Sbjct: 62  VKEQRARFYIMRRCVIMLICW 80

The following BLAST results are available for this feature:

BLAST of CmaCh02G007900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L7D0	2.0e-20	59.65	Small polypeptide DEVIL 13 OS=Arabidopsis thaliana OX=3702 GN=DVL13 PE=3 SV=1	[more]
Q6IM92	3.3e-15	58.41	Small polypeptide DEVIL 9 OS=Arabidopsis thaliana OX=3702 GN=DVL9 PE=1 SV=1	[more]
Q8LE84	7.9e-09	44.83	Small polypeptide DEVIL 18 OS=Arabidopsis thaliana OX=3702 GN=DVL18 PE=2 SV=1	[more]
Q6IM86	2.5e-07	51.52	Small polypeptide DEVIL 15 OS=Arabidopsis thaliana OX=3702 GN=DVL15 PE=2 SV=1	[more]
A0A5S6RB44	1.2e-04	36.07	Small polypeptide ROTUNDIFOLIA LIKE 3 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

BLAST of CmaCh02G007900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G29125.1	1.4e-21	59.65	ROTUNDIFOLIA like 2	[more]
AT1G07490.1	2.4e-16	58.41	ROTUNDIFOLIA like 3	[more]
AT5G59510.1	5.6e-10	44.83	ROTUNDIFOLIA like 5	[more]
AT3G46613.1	1.8e-08	51.52	ROTUNDIFOLIA like 4	[more]
AT2G39705.1	2.4e-05	41.98	ROTUNDIFOLIA like 8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 80..98 e-value: 2.5E-12 score: 46.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..76
None	No IPR available	PANTHER	PTHR47596	DVL13	coord: 1..104
None	No IPR available	PANTHER	PTHR47596:SF2	DVL13	coord: 1..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G007900.1	CmaCh02G007900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008285	negative regulation of cell population proliferation
biological_process	GO:0048367	shoot system development
cellular_component	GO:0005886	plasma membrane