CmaCh02G007800 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G007800
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Major viral transcription factor
Location	Cma_Chr02: 4659137 .. 4659553 (-)
RNA-Seq Expression	CmaCh02G007800
Synteny	CmaCh02G007800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCAAATCAAACTTTCGTGGTTGATTTTCCCAGAGCAGCAATGGAGAAAGAACATAAATCCAGATTGCCTAAACCTCCGACCAGGTTACAGAAGCAGGCGCCGGCGAGTCTTCATCTCGATCAACTAACGAGTGTCTCGATGTCTTCTGGTAGTGCTGATATTTCTTCGAAGGCGGTTCTTCCTCTGCTATCGCCGCTCCCTTCATCGCCACAGCCTTTTCCTGAAACTGAGGGAAATAGAAGAGCAGCAAACGGAAATACCGTAGACGGCGGCTATGGCGATCAAAGAGGTATATGTTTTGCACCTCCTGGTGGCTGGCAACATCCAGCGGTGGCGACGACATTCGCCGATCCATCTACTCTGTTTACGTTCTTTCAATCGCAGTGCATCGTGAACAGTAAGACGCCGTGA

mRNA sequence

ATGAATGCAAATCAAACTTTCGTGGTTGATTTTCCCAGAGCAGCAATGGAGAAAGAACATAAATCCAGATTGCCTAAACCTCCGACCAGGTTACAGAAGCAGGCGCCGGCGAGTCTTCATCTCGATCAACTAACGAGTGTCTCGATGTCTTCTGGTAGTGCTGATATTTCTTCGAAGGCGGTTCTTCCTCTGCTATCGCCGCTCCCTTCATCGCCACAGCCTTTTCCTGAAACTGAGGGAAATAGAAGAGCAGCAAACGGAAATACCGTAGACGGCGGCTATGGCGATCAAAGAGGTATATGTTTTGCACCTCCTGGTGGCTGGCAACATCCAGCGGTGGCGACGACATTCGCCGATCCATCTACTCTGTTTACGTTCTTTCAATCGCAGTGCATCGTGAACAGTAAGACGCCGTGA

Coding sequence (CDS)

ATGAATGCAAATCAAACTTTCGTGGTTGATTTTCCCAGAGCAGCAATGGAGAAAGAACATAAATCCAGATTGCCTAAACCTCCGACCAGGTTACAGAAGCAGGCGCCGGCGAGTCTTCATCTCGATCAACTAACGAGTGTCTCGATGTCTTCTGGTAGTGCTGATATTTCTTCGAAGGCGGTTCTTCCTCTGCTATCGCCGCTCCCTTCATCGCCACAGCCTTTTCCTGAAACTGAGGGAAATAGAAGAGCAGCAAACGGAAATACCGTAGACGGCGGCTATGGCGATCAAAGAGGTATATGTTTTGCACCTCCTGGTGGCTGGCAACATCCAGCGGTGGCGACGACATTCGCCGATCCATCTACTCTGTTTACGTTCTTTCAATCGCAGTGCATCGTGAACAGTAAGACGCCGTGA

Protein sequence

MNANQTFVVDFPRAAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRRAANGNTVDGGYGDQRGICFAPPGGWQHPAVATTFADPSTLFTFFQSQCIVNSKTP

Homology

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BLAST of CmaCh02G007800 vs. TAIR 10
Match: AT1G07473.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07476.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-05
Identity = 26/54 (48.15%), Postives = 32/54 (59.26%), Query Frame = 0


Query: 21 KSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQP 75
          KS  P+ PTRLQKQAP +LHL  +        S+D+     +PLLSPL  SP P
Sbjct: 10 KSESPRSPTRLQKQAPTALHLGLVPENPFLQQSSDVVGTTAIPLLSPLFVSPSP 63

The following BLAST results are available for this feature:

BLAST of CmaCh02G007800 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G007800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07473.1	1.9e-05	48.15	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..98
None	No IPR available	PANTHER	PTHR33912:SF5	F22G5.17	coord: 10..134
IPR040381	Uncharacterized protein At4g14450-like	PANTHER	PTHR33912	OS01G0939400 PROTEIN	coord: 10..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G007800.1	CmaCh02G007800.1	mRNA