CmaCh02G007170 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G007170
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionGDSL esterase/lipase
LocationCma_Chr02: 4339491 .. 4339923 (+)
RNA-Seq ExpressionCmaCh02G007170
SyntenyCmaCh02G007170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGAGGATCAAAATTCAGATTCCGAAGACTACAACCAAAAGCTTTCAAAGCTACTCAGCAATTTACAATAACAACTAAGTGGAAGCACGATTTTGTACGCTGACATTAATACCCCTCTCATTGATATGGTCAATAATCCTAAAAAATATGGTAAGTCAATTCCGTAAATATTTACGGGAAATCAAAGTTTGAGAACCATTTTCAACTAATTTTTGGTTCGGGCATTTGTTGAACAGGTTTTTCAGCATATAGATAAGGGTTGTTGTGGAATTGGATTAGTTGAAGTCGAGCCTCTATGTAATGTAATTATCCCAACGTGTAAAGATCCTTAAAAATTTAAGTTCTGGGATAGCATTCATCCGACTGAAGCAGCCTACAAGTTCGTCACTAAATCGCTTCTCAAGCAATTTTTCAATCATCTAAATTGA

mRNA sequence

ATGTTTGGAGGATCAAAATTCAGATTCCGAAGACTACAACCAAAAGCTTTCAAAGCTACTCAGCAATTTACAATAACAACTAAGTGGAAGCACGATTTTGTTTTTCAGCATATAGATAAGGGTTGTTGTGGAATTGGATTAGTTGAAGTCGAGCCTCTATGTAATTTCTGGGATAGCATTCATCCGACTGAAGCAGCCTACAAGTTCGTCACTAAATCGCTTCTCAAGCAATTTTTCAATCATCTAAATTGA

Coding sequence (CDS)

ATGTTTGGAGGATCAAAATTCAGATTCCGAAGACTACAACCAAAAGCTTTCAAAGCTACTCAGCAATTTACAATAACAACTAAGTGGAAGCACGATTTTGTTTTTCAGCATATAGATAAGGGTTGTTGTGGAATTGGATTAGTTGAAGTCGAGCCTCTATGTAATTTCTGGGATAGCATTCATCCGACTGAAGCAGCCTACAAGTTCGTCACTAAATCGCTTCTCAAGCAATTTTTCAATCATCTAAATTGA

Protein sequence

MFGGSKFRFRRLQPKAFKATQQFTITTKWKHDFVFQHIDKGCCGIGLVEVEPLCNFWDSIHPTEAAYKFVTKSLLKQFFNHLN
Homology
BLAST of CmaCh02G007170 vs. ExPASy Swiss-Prot
Match: Q94CH8 (GDSL esterase/lipase EXL1 OS=Arabidopsis thaliana OX=3702 GN=EXL1 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-09
Identity = 27/64 (42.19%), Postives = 35/64 (54.69%), Query Frame = 0

Query: 31  HDFVFQHIDKGCCGIGLVEVEPLCN--------------FWDSIHPTEAAYKFVTKSLLK 81
           H + F+  +KGCCG GL+EV  LCN              FWDS HPTE AY+ +   LL 
Sbjct: 309 HQYGFKVANKGCCGTGLIEVTALCNNYTASVCPIRSDYVFWDSFHPTEKAYRIIVAKLLD 368

BLAST of CmaCh02G007170 vs. ExPASy Swiss-Prot
Match: P0DKJ6 (GDSL esterase/lipase At1g20120 OS=Arabidopsis thaliana OX=3702 GN=At1g20120 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-08
Identity = 25/56 (44.64%), Postives = 33/56 (58.93%), Query Frame = 0

Query: 35  FQHIDKGCCGIGLVEVEPLCN--------------FWDSIHPTEAAYKFVTKSLLK 77
           F  ID+GCCG GL+E+ PLCN              FWDS HPTE AYK +++  ++
Sbjct: 338 FDEIDRGCCGTGLLELGPLCNKYTSLLCKNVSSFMFWDSYHPTERAYKILSQKFVE 393

BLAST of CmaCh02G007170 vs. ExPASy Swiss-Prot
Match: Q94CH6 (GDSL esterase/lipase EXL3 OS=Arabidopsis thaliana OX=3702 GN=EXL3 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.6e-07
Identity = 25/63 (39.68%), Postives = 33/63 (52.38%), Query Frame = 0

Query: 32  DFVFQHIDKGCCGIGLVEVEPLCN--------------FWDSIHPTEAAYKFVTKSLLKQ 81
           ++ F+  +KGCCG G +EV  LCN              FWDS HPTE  YK +   L+ +
Sbjct: 299 NYGFEVSNKGCCGTGAIEVAVLCNKITSSVCPDVSTHVFWDSYHPTEKTYKVLVSLLINK 358

BLAST of CmaCh02G007170 vs. ExPASy Swiss-Prot
Match: Q94CH7 (GDSL esterase/lipase EXL2 OS=Arabidopsis thaliana OX=3702 GN=EXL2 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.5e-07
Identity = 23/58 (39.66%), Postives = 31/58 (53.45%), Query Frame = 0

Query: 35  FQHIDKGCCGIGLVEVEPLCN--------------FWDSIHPTEAAYKFVTKSLLKQF 79
           F+ +DKGCCG GL+EV  LCN              FWDS HPTE  Y+ +     +++
Sbjct: 321 FKVVDKGCCGTGLIEVALLCNNFAADVCPNRDEYVFWDSFHPTEKTYRIMATKYFERY 378

BLAST of CmaCh02G007170 vs. ExPASy Swiss-Prot
Match: Q9LH73 (GDSL esterase/lipase At3g14820 OS=Arabidopsis thaliana OX=3702 GN=At3g14820 PE=3 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 4.5e-07
Identity = 25/66 (37.88%), Postives = 37/66 (56.06%), Query Frame = 0

Query: 32  DFVFQHIDKGCCGIGLVEVEPLCN--------------FWDSIHPTEAAYKFVTKSLLKQ 84
           ++ F+  DKGCCG G +E+  LCN              F+DS HP+E AY+ +T  LL +
Sbjct: 285 NYGFKVADKGCCGTGKIELMELCNKFTPFTCSDASTHVFFDSYHPSEKAYQIITHKLLAK 344

BLAST of CmaCh02G007170 vs. TAIR 10
Match: AT1G20132.1 (GDSL-like Lipase/Acylhydrolase superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-11
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 0

Query: 32  DFVFQHIDKGCCGIGLVEVEPLCN--------------FWDSIHPTEAAYKFVTKSLLKQ 84
           D+ F+ I +GCCG G VE  PLCN              FWDS+HPT+  YK +TK L ++
Sbjct: 318 DYGFEEIKRGCCGTGFVEAGPLCNRFTTFVCSNVSAYMFWDSLHPTQRFYKILTKILFEK 377

BLAST of CmaCh02G007170 vs. TAIR 10
Match: AT1G75880.1 (SGNH hydrolase-type esterase superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 27/64 (42.19%), Postives = 35/64 (54.69%), Query Frame = 0

Query: 31  HDFVFQHIDKGCCGIGLVEVEPLCN--------------FWDSIHPTEAAYKFVTKSLLK 81
           H + F+  +KGCCG GL+EV  LCN              FWDS HPTE AY+ +   LL 
Sbjct: 309 HQYGFKVANKGCCGTGLIEVTALCNNYTASVCPIRSDYVFWDSFHPTEKAYRIIVAKLLD 368

BLAST of CmaCh02G007170 vs. TAIR 10
Match: AT1G75880.2 (SGNH hydrolase-type esterase superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 27/64 (42.19%), Postives = 35/64 (54.69%), Query Frame = 0

Query: 31  HDFVFQHIDKGCCGIGLVEVEPLCN--------------FWDSIHPTEAAYKFVTKSLLK 81
           H + F+  +KGCCG GL+EV  LCN              FWDS HPTE AY+ +   LL 
Sbjct: 308 HQYGFKVANKGCCGTGLIEVTALCNNYTASVCPIRSDYVFWDSFHPTEKAYRIIVAKLLD 367

BLAST of CmaCh02G007170 vs. TAIR 10
Match: AT1G20120.1 (GDSL-like Lipase/Acylhydrolase superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-09
Identity = 25/56 (44.64%), Postives = 33/56 (58.93%), Query Frame = 0

Query: 35  FQHIDKGCCGIGLVEVEPLCN--------------FWDSIHPTEAAYKFVTKSLLK 77
           F  ID+GCCG GL+E+ PLCN              FWDS HPTE AYK +++  ++
Sbjct: 338 FDEIDRGCCGTGLLELGPLCNKYTSLLCKNVSSFMFWDSYHPTERAYKILSQKFVE 393

BLAST of CmaCh02G007170 vs. TAIR 10
Match: AT1G75890.1 (GDSL-like Lipase/Acylhydrolase superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 3.2e-08
Identity = 23/58 (39.66%), Postives = 31/58 (53.45%), Query Frame = 0

Query: 35  FQHIDKGCCGIGLVEVEPLCN--------------FWDSIHPTEAAYKFVTKSLLKQF 79
           F+ +DKGCCG GL+EV  LCN              FWDS HPTE  Y+ +     +++
Sbjct: 321 FKVVDKGCCGTGLIEVALLCNNFAADVCPNRDEYVFWDSFHPTEKTYRIMATKYFERY 378

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q94CH81.6e-0942.19GDSL esterase/lipase EXL1 OS=Arabidopsis thaliana OX=3702 GN=EXL1 PE=2 SV=1[more]
P0DKJ61.8e-0844.64GDSL esterase/lipase At1g20120 OS=Arabidopsis thaliana OX=3702 GN=At1g20120 PE=2... [more]
Q94CH62.6e-0739.68GDSL esterase/lipase EXL3 OS=Arabidopsis thaliana OX=3702 GN=EXL3 PE=2 SV=1[more]
Q94CH74.5e-0739.66GDSL esterase/lipase EXL2 OS=Arabidopsis thaliana OX=3702 GN=EXL2 PE=2 SV=1[more]
Q9LH734.5e-0737.88GDSL esterase/lipase At3g14820 OS=Arabidopsis thaliana OX=3702 GN=At3g14820 PE=3... [more]
Match NameE-valueIdentityDescription
AT1G20132.11.4e-1142.42GDSL-like Lipase/Acylhydrolase superfamily protein [more]
AT1G75880.11.2e-1042.19SGNH hydrolase-type esterase superfamily protein [more]
AT1G75880.21.2e-1042.19SGNH hydrolase-type esterase superfamily protein [more]
AT1G20120.11.3e-0944.64GDSL-like Lipase/Acylhydrolase superfamily protein [more]
AT1G75890.13.2e-0839.66GDSL-like Lipase/Acylhydrolase superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036514SGNH hydrolase superfamilyGENE3D3.40.50.1110SGNH hydrolasecoord: 13..80
e-value: 2.4E-5
score: 25.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G007170.1CmaCh02G007170.1mRNA