CmaCh02G007120 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G007120
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	Cma_Chr02: 4312150 .. 4313270 (+)
RNA-Seq Expression	CmaCh02G007120
Synteny	CmaCh02G007120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACATGCACGGGCATGGCGAGGAGGGGCTGATTGTGGGAGTGTACGTCAACGACCTCATAATCTCTAGAGGGGACATGGAAGTTCTTGGAAGATTCAAGAGGGAGATGTCAAAGAACTTCAAGATGAGCGATCTCGGTGTGCTTAGTGTCACAATCTGCAATATGATTGTGATTCGAGTAAGTCATCGAGGACGATGACTAAGTTAAGTGGAGGAGAATGTCACAACCATAGTATGAAGAGAGTAGGTTGTGACCCTCACGCCATGACAAGCAAAGGGGCGTCCCTCAAGAGACGCCCCATCCGGCCATATGTGGGTCAACATAGAAGAATGCCATGATGCAATCGAGGAGGACGATGCATCATCCAACACACCCCCACGCAAAGTGGGTATTGAAGATATATGTTGAGACATAAGCATAACAGAGAAATCAGCATAGACATGAAGGACAAGATAGGCTTGTTGAAGGGCCAGGTAGGGCCCCGGGCCTTAACCTCAAAGTCAGGGTTTCGGAAGGGATTTGGGCATGTGGTTCGAGAGTTAAGTCCGTCCATATGAAATATGAATGCTCGCCAAGTTTGGTGTCAATCGAACATTGGACGGACAATGCACGACACCGTATGACACCTCACCAAAATCATGTCTACACCTAGTAGAATGAAAATGGCTCAAAATGTACTAGAGGGGTACCATGGTGTTAGCTCTCCACCACCCCTGGGTCCTTTGGCCTAAGTGAGCTACCCTATGGCACATACGTGTGTCACAGTGTGGGCGAGCGTGCCGAGACGAGTATCTCGAGCGACTTCCTTTGAAATGGGTTTTTGAAGGACAGTACCGGACGACACGGGTGTGCCGGTATTGCACCCTAGCCCATGTGTTGGAGGTTGCTACATACACCCGCTATCCGGGACGGTATCTGTAAATGACTCGGCATGGGCACGGGAAGACCTATGCCTCGATAGAACCCAGATGGATGGATGTTCGGGAAGTCCCGATGAGATGAACGACATGCTGGCCCATTCTCGATGGCATGATCGAATGAGTTATGATGGCCTACGATATCCCGAGACTCGGGATGGCGCCAAGACATATGGACCCTATCGATGGGGATCGAGATGA

mRNA sequence

ATGTACATGCACGGGCATGGCGAGGAGGGGCTGATTGTGGGAGTGTACGTCAACGACCTCATAATCTCTAGAGGGGACATGGAAGTTCTTGGAAGATTCAAGAGGGAGATGTCAAAGAACTTCAAGATGAGCGATCTCGGTGTGCTTAGTGTCACAATCTGCAATATGATTGTGATTCGAAGAAATCAGCATAGACATGAAGGACAAGATAGGCTTGTTGAAGGGCCAGGTAGGGCCCCGGGCCTTAACCTCAAAGTCAGGGTTTCGGAAGGGATTTGGGCATGTGGTTCGAGAGTTAAGACAGTACCGGACGACACGGGTGTGCCGGTATTGCACCCTAGCCCATGTGTTGGAGGTTGCTACATACACCCGCTATCCGGGACGGTATCTGTAAATGACTCGGCATGGGCACGGGAAGACCTATGCCTCGATAGAACCCAGATGGATGGATGTTCGGGAAGTCCCGATGAGATGAACGACATGCTGGCCCATTCTCGATGGCATGATCGAATGAGTTATGATGGCCTACGATATCCCGAGACTCGGGATGGCGCCAAGACATATGGACCCTATCGATGGGGATCGAGATGA

Coding sequence (CDS)

ATGTACATGCACGGGCATGGCGAGGAGGGGCTGATTGTGGGAGTGTACGTCAACGACCTCATAATCTCTAGAGGGGACATGGAAGTTCTTGGAAGATTCAAGAGGGAGATGTCAAAGAACTTCAAGATGAGCGATCTCGGTGTGCTTAGTGTCACAATCTGCAATATGATTGTGATTCGAAGAAATCAGCATAGACATGAAGGACAAGATAGGCTTGTTGAAGGGCCAGGTAGGGCCCCGGGCCTTAACCTCAAAGTCAGGGTTTCGGAAGGGATTTGGGCATGTGGTTCGAGAGTTAAGACAGTACCGGACGACACGGGTGTGCCGGTATTGCACCCTAGCCCATGTGTTGGAGGTTGCTACATACACCCGCTATCCGGGACGGTATCTGTAAATGACTCGGCATGGGCACGGGAAGACCTATGCCTCGATAGAACCCAGATGGATGGATGTTCGGGAAGTCCCGATGAGATGAACGACATGCTGGCCCATTCTCGATGGCATGATCGAATGAGTTATGATGGCCTACGATATCCCGAGACTCGGGATGGCGCCAAGACATATGGACCCTATCGATGGGGATCGAGATGA

Protein sequence

MYMHGHGEEGLIVGVYVNDLIISRGDMEVLGRFKREMSKNFKMSDLGVLSVTICNMIVIRRNQHRHEGQDRLVEGPGRAPGLNLKVRVSEGIWACGSRVKTVPDDTGVPVLHPSPCVGGCYIHPLSGTVSVNDSAWAREDLCLDRTQMDGCSGSPDEMNDMLAHSRWHDRMSYDGLRYPETRDGAKTYGPYRWGSR

Homology

The following BLAST results are available for this feature:

BLAST of CmaCh02G007120 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G007120 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..51 e-value: 2.2E-12 score: 47.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G007120.1	CmaCh02G007120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042545	cell wall modification
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0010951	negative regulation of endopeptidase activity
biological_process	GO:0045490	pectin catabolic process
cellular_component	GO:0005615	extracellular space
molecular_function	GO:0045330	aspartyl esterase activity
molecular_function	GO:0005488	binding
molecular_function	GO:0030599	pectinesterase activity
molecular_function	GO:0004867	serine-type endopeptidase inhibitor activity