CmaCh02G006970 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G006970
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	HTH myb-type domain-containing protein
Location	Cma_Chr02: 4251787 .. 4256385 (-)
RNA-Seq Expression	CmaCh02G006970
Synteny	CmaCh02G006970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATTTTTATTTAGGCTCTTTTTTCTCCCGCTTCAAACGACATAACATCCGAATCGTTCGTGAAGATCTTGCGAATTCAAAATGTGCTCTCTCTGACTCCGGCGTCCACTGGTTTGTCGTCTTTACGTTTATCATCATCGTCATCTCTAATTCGCCATCGTAACATTCGAGAAAATCTCCAATTTCTGGTAATTTCAGTTCCCGCATTTTGTTTTTGAGGTGTGATTCTGTTCGCAGTTAGGGTTTTTTCTTCCTTATTTTCTGTCTCGGATTCTATTTTGACCATGGACAAGGACGTTTGCCGATGGATTATCGAGTTCATACTCCGGAGTTCAATGAACGATCAGTTGCTGAAGAGAACTCTTGCGATTATGCCCTTTCCGGACAACGATTTCCGCCTGAAGAAAACGGTTCTATTACGGGCTATTGAGAGCGAAAGATCAGAAGCTATAGTAACAGAGAAAGTACTCGCGATTTTCGAGATGATTGAGCAGTTGGACAAGACTGAAGGCCTTGCAATGATGGATTCAATGAAATCTGCTTATTGTGCCGTGGCAGTGGAGTGCACGGTCAAGTACTTGGCGGTGGAAGGCATGAAGAACAATGGAAAGTATTTTGATACAGTGAGTAGGATTTGGAGAGGGAGAGTGATGGAATTGAAGAGGTCGGGAAGGAGTGAATTGGTTTCACGTGAATTGGAAGAATGGAAGGATAAAGTAGAAGCGGCACTCTGGGATAAAACTGTCTGGAAGAAACTGGTGAATATGAATTCTAGATATGAAGCTTTGAAACTGATAGGAGATTATCTGGGTGAGGCTTGGGGTGTTCTTGGTCCCTCATTCCTAGAATTATCTGCTTCTTTAATGGATAACAGGACGAGGAATGAAATGCAGTCTGTTCAATTGGAGCAGGCAATACACAAAACGGCTGTTGTGAGTGAAGATGTTGGTGGGAGTGGTGGGATTGAATTGCCCTCCCAAACTGAAAACCATGCGAAACGGGAGCATCAGGGGAGCGTGCCAGTCCTTACCCGAGCTGAAACAAAGAGAAACGATGTGCTAGATATAAATCAGGATTCGGGTGTCAACGACAATTCTAAACGATCGTCCACTGTTGAAATGAACACTGAGAGAGTTCAAGAGTTGCCTACAGAAACAACGGAAGGGAAAGAATCAGTTGAGAAGGAAGTTACAGTTTTGCAAGATCCAAGCCCAAACTGCCGCAGTAATGATATGCATATCCACTCTGTTATAGTTTGATGATAAATGCTAGCTTATATCTTTATAACTCTATTATGTTTTTATTCAAATTAAGATTTTTGTTATCTTTAATTTTGAAATCTTAGGTTTAAGCATCTTCAATCTAGTTATTTGTTTTGTGTACTCAGAAAATTTGAAGACTTCTGTCTTGCCAAGATGCAAATCCCTTGCATCCCATAAGCGTGTTAGAGGAGGGGCTAAAATTGGTCATCTTGAGGACTTGGAGAATGACAGTTCATCTGGAAAGTCTACTTGCCTACAAACTCCAGAATTTGATCGGGTACGAGAAGCGTTTAAAACCAGCTCTTTAGAGCTGCAAGCATTGGTTAAAGATCCACTTCCTGATGCATTACGCATTGCGGAATCTGTAGCTCAAGATCTTGCTAAAAAGAATAAAACTCCTGAGCATTCTTTGGAGGACCAAAATGATGCAGTTGCTGCGAATCCAGCCATTAACAAGGATAATATGCCTCTTCAATCCATGAATACAGCTTTCAACAATCCACGCCATGGCCATCAGACAATTGTTCCACGACCTAGTATAATGGAGCGCAACAGTTCGGCTTGTACATATGAGGTAATGTAAGACATGTTTGATGCCATGCTAGCATGCCTTTTCTGCTTTCTGTTATAGTTGCACGAATTTACATTGCTTGTTAAAGGCTTCGTTCTTGATTGTGCAATGTCAAATATTTTATGTTTTCAAGATTATCATTGCTAGGAGGAATTGTTGAGTCTCAACAAAATGCTGGAGGCTTCCTCGTTTGGGTTAATATTTGGTGTTGTCAACCATTTCCATTTTAATCAAGAATTTTATTATGGTTACACCATTAATGCTATGTTATATTACAAGGGAAGTTTGACTGGTTTCTTTGGTGGTTGATTATGATATTTGGAAACAGTACATTATGGTTTTATGCTTCATGTCTACGTACCCTTGAAAATCCTTTGGTGGGGAATGAAATATTGATCTTCTTTACTGATGTTGCCTCCCTCATAACTGAGGGACTTATTCTATATGCGTAATTATTTTTATTTACTTTCAAGTTAAATTTTTTCTATTGTAAGTTTTCTTTTTTCTTTTTGTTGCAGTGGAATGATTCAATAGATGGTTCTCCGGAAAGAAATCGCGCTAGCCGACTTCACCTACCTAGTCCCAAGAGAAAGGTCATTTCTCCCTTGAAGAAGTATGAAGAAACCAGACTGGTTTGGAGAAGGAAGTGTAAGAGGTGGAGCTTGCTTGAAGAAGATACCTTAAGAACTGCTGTGCAAAGGTATGTGGCTATGTGCCTTCAACTGTTACTATTTTCGTCTGTTTATATAGGGATAAATAAAAAGAGATTTGAGTGTTTCTCTCACTCGAACATACACACATCACTCGAGCCCGCATTATTTAGTTAAAAACTTGAAATTATATGATGGTTGATGTTTTGTTAGCTTATTGCCTCTTCACTTAATGGTCTTGTTTGTGTTGGTAATATAGGTTTGGTAAAGGAAATTGGAAGCTCATCTTAAATAGCTATCGTGAAATATTTGATGAAAGAACAGAGGTAACCAATTTCACAATGATCTTACATGTTGTCTTTTGAGTATCCATGCCGTTATGTAAGACGTTTTTGGGTTGTTGTCTCAGGTTGATTTGAAGGATAAGTGGAGAAACATGACCCGATACTAATGTATTTGCGAGTCTCGATCCAAACTCATGTGTTGTAGAGATTGACCTCTAGAAGTTGAATTATATGGCCCCCCCTTGTATTTTGATTGTAATATAGAAAAATTGAAAATATCAACGGGAACGGAATTTCGGAGTTGATCTACATATTTGGTCGTTATTTAGATGTTGCATTGTGCAGCCGAAGGAGCAAGCTGATTTTTGTTCCAGTAGCAATGGTTGAACAAGCACCGTTTTAGCATGTAAGATTTCTGTACCACTTCCCACATGATCATCCCTGCTTCTGAACCCTATTTTGATTTGTGTTTCAACAGGTTTGCCCCACTTCTGCTCAACAAATTTGGTGAAGGTAAACATATTTTCTCCTTTTTCATTTATGAACACCGCTGAACTTGTGCTCTGGTCCTGATTTCTATTCATTGCTGCATCTGCATTCATCTTCATTAGTAGTTGTCCACACATCTGAAAACGTTCATTAATACGTTGAACTTTTAATGCATACCTCGATGCATACCTACGACGAAGTTTTCGTTGAAGGCTTAGGCTTAGATTAGAGAGTTTCTCAAAACAAATTTCAGACACTAGGATAGACTCAGTATGTCATTTAGCTCATCAAGCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGGTTGCCCGACATGAACACAACATGTTTCATTCCAACAAAGCTTTCAGGCTCATGAACATAACAACAAGGCTTCATATGCCAAAACAAACATTTCAAGGAAACCCATTTGAAGAATCCCCCTAAGAATGCAAAAGAAAAGTTGGTCCTTAAATACAAATCAAATGAATGCTATTGAAGTGGAGGAGAAGCTTCTCTAAATAATCGGAGGTCGATCTATAAACAATAAACTAAATAGCATGAATCATCAACAAGTCAGTTGGGTCAAGCGTCAGGAGCCAGTTTTGCATCAAAAAGTTGTACTGCTCTCACTTGCAGAGATTGAGGGGACCTCAGATTTCACTAGTGACGATCCTTTACTACTGATGTCTAGACCCTGCAATCGGCCGAGAGGGTCGCTCTGCAGAACCTCCGAGAGAGAATGAGAATCTGATGGATGCATAGGGTGGCTAGACATGTTAGATGGGGAATGGCTATATGGTGGCATTTGCATATTCTGAGGACCTGCTGGTTGCTGTGAAAGTTGAACGAAAGACGATGGGGCATATGCCATGTGATGCATTCCCAAGTTAAAAGACTCGGAAGGGCTCATCATTTCCCCGGTAGCGAATTTAAGCCTCTCGACTTCCTTCTTTAATGCATCGTTTAGAGCTGCATACAGTTCAGGACAATTTCAAACAAGACTGAGATAGTAACATATGTTCAAAACTAAGTACTGACGTATAATCCTCACCATCACGCAATTGAGCTTGTTGCTCCATAGCCTGTAACCGAAGCTTAAGCTCTGTATTCTCGTTACTGAGACCCCTTGTGTCTCGCTGTGATGACAAGTCTTAATTAGATCATAGTTCTAAGTCCATTGTCAGTTAACGTGAATATGATGAAGGGATAAAATTGCGAAACGATA

mRNA sequence

ATATTTTTATTTAGGCTCTTTTTTCTCCCGCTTCAAACGACATAACATCCGAATCGTTCGTGAAGATCTTGCGAATTCAAAATGTGCTCTCTCTGACTCCGGCGTCCACTGGTTTGTCGTCTTTACGTTTATCATCATCGTCATCTCTAATTCGCCATCGTAACATTCGAGAAAATCTCCAATTTCTGGTAATTTCAGTTCCCGCATTTTGTTTTTGAGGTGTGATTCTGTTCGCAGTTAGGGTTTTTTCTTCCTTATTTTCTGTCTCGGATTCTATTTTGACCATGGACAAGGACGTTTGCCGATGGATTATCGAGTTCATACTCCGGAGTTCAATGAACGATCAGTTGCTGAAGAGAACTCTTGCGATTATGCCCTTTCCGGACAACGATTTCCGCCTGAAGAAAACGGTTCTATTACGGGCTATTGAGAGCGAAAGATCAGAAGCTATAGTAACAGAGAAAGTACTCGCGATTTTCGAGATGATTGAGCAGTTGGACAAGACTGAAGGCCTTGCAATGATGGATTCAATGAAATCTGCTTATTGTGCCGTGGCAGTGGAGTGCACGGTCAAGTACTTGGCGGTGGAAGGCATGAAGAACAATGGAAAGTATTTTGATACAGTGAGTAGGATTTGGAGAGGGAGAGTGATGGAATTGAAGAGGTCGGGAAGGAGTGAATTGGTTTCACGTGAATTGGAAGAATGGAAGGATAAAGTAGAAGCGGCACTCTGGGATAAAACTGTCTGGAAGAAACTGGTGAATATGAATTCTAGATATGAAGCTTTGAAACTGATAGGAGATTATCTGGGTGAGGCTTGGGGTGTTCTTGGTCCCTCATTCCTAGAATTATCTGCTTCTTTAATGGATAACAGGACGAGGAATGAAATGCAGTCTGTTCAATTGGAGCAGGCAATACACAAAACGGCTGTTGTGAGTGAAGATGTTGGTGGGAGTGGTGGGATTGAATTGCCCTCCCAAACTGAAAACCATGCGAAACGGGAGCATCAGGGGAGCGTGCCAGTCCTTACCCGAGCTGAAACAAAGAGAAACGATGTGCTAGATATAAATCAGGATTCGGGTGTCAACGACAATTCTAAACGATCGTCCACTGTTGAAATGAACACTGAGAGAGTTCAAGAGTTGCCTACAGAAACAACGGAAGGGAAAGAATCAGTTGAGAAGGAAGTTACAGTTTTGCAAGATCCAAGCCCAAACTGCCGCAAAAATTTGAAGACTTCTGTCTTGCCAAGATGCAAATCCCTTGCATCCCATAAGCGTGTTAGAGGAGGGGCTAAAATTGGTCATCTTGAGGACTTGGAGAATGACAGTTCATCTGGAAAGTCTACTTGCCTACAAACTCCAGAATTTGATCGGGTACGAGAAGCGTTTAAAACCAGCTCTTTAGAGCTGCAAGCATTGGTTAAAGATCCACTTCCTGATGCATTACGCATTGCGGAATCTGTAGCTCAAGATCTTGCTAAAAAGAATAAAACTCCTGAGCATTCTTTGGAGGACCAAAATGATGCAGTTGCTGCGAATCCAGCCATTAACAAGGATAATATGCCTCTTCAATCCATGAATACAGCTTTCAACAATCCACGCCATGGCCATCAGACAATTGTTCCACGACCTAGTATAATGGAGCGCAACAGTTCGGCTTGTACATATGAGTGGAATGATTCAATAGATGGTTCTCCGGAAAGAAATCGCGCTAGCCGACTTCACCTACCTAGTCCCAAGAGAAAGGTCATTTCTCCCTTGAAGAAGTATGAAGAAACCAGACTGGTTTGGAGAAGGAAGTGTAAGAGGTGGAGCTTGCTTGAAGAAGATACCTTAAGAACTGCTGTGCAAAGGTTTGGTAAAGGAAATTGGAAGCTCATCTTAAATAGCTATCGTGAAATATTTGATGAAAGAACAGAGGTTGATTTGAAGGATAAGTGGAGAAACATGACCCGATACTAATGTATTTGCGAGTCTCGATCCAAACTCATGTGTTGTAGAGATTGACCTCTAGAAGTTGAATTATATGGCCCCCCCTTGTATTTTGATTGTAATATAGAAAAATTGAAAATATCAACGGGAACGGAATTTCGGAGTTGATCTACATATTTGGTCGTTATTTAGATGTTGCATTGTGCAGCCGAAGGAGCAAGCTGATTTTTGTTCCAGTAGCAATGGTTGAACAAGCACCGTTTTAGCATGTTTGCCCCACTTCTGCTCAACAAATTTGGTGAAGAGATTGAGGGGACCTCAGATTTCACTAGTGACGATCCTTTACTACTGATGTCTAGACCCTGCAATCGGCCGAGAGGGTCGCTCTGCAGAACCTCCGAGAGAGAATGAGAATCTGATGGATGCATAGGGTGGCTAGACATGTTAGATGGGGAATGGCTATATGGTGGCATTTGCATATTCTGAGGACCTGCTGGTTGCTGTGAAAGTTGAACGAAAGACGATGGGGCATATGCCATGTGATGCATTCCCAAGTTAAAAGACTCGGAAGGGCTCATCATTTCCCCGGTAGCGAATTTAAGCCTCTCGACTTCCTTCTTTAATGCATCGTTTAGAGCTGCATACAGTTCAGGACAATTTCAAACAAGACTGAGATAGTAACATATGTTCAAAACTAAGTACTGACGTATAATCCTCACCATCACGCAATTGAGCTTGTTGCTCCATAGCCTGTAACCGAAGCTTAAGCTCTGTATTCTCGTTACTGAGACCCCTTGTGTCTCGCTGTGATGACAAGTCTTAATTAGATCATAGTTCTAAGTCCATTGTCAGTTAACGTGAATATGATGAAGGGATAAAATTGCGAAACGATA

Coding sequence (CDS)

ATGGACAAGGACGTTTGCCGATGGATTATCGAGTTCATACTCCGGAGTTCAATGAACGATCAGTTGCTGAAGAGAACTCTTGCGATTATGCCCTTTCCGGACAACGATTTCCGCCTGAAGAAAACGGTTCTATTACGGGCTATTGAGAGCGAAAGATCAGAAGCTATAGTAACAGAGAAAGTACTCGCGATTTTCGAGATGATTGAGCAGTTGGACAAGACTGAAGGCCTTGCAATGATGGATTCAATGAAATCTGCTTATTGTGCCGTGGCAGTGGAGTGCACGGTCAAGTACTTGGCGGTGGAAGGCATGAAGAACAATGGAAAGTATTTTGATACAGTGAGTAGGATTTGGAGAGGGAGAGTGATGGAATTGAAGAGGTCGGGAAGGAGTGAATTGGTTTCACGTGAATTGGAAGAATGGAAGGATAAAGTAGAAGCGGCACTCTGGGATAAAACTGTCTGGAAGAAACTGGTGAATATGAATTCTAGATATGAAGCTTTGAAACTGATAGGAGATTATCTGGGTGAGGCTTGGGGTGTTCTTGGTCCCTCATTCCTAGAATTATCTGCTTCTTTAATGGATAACAGGACGAGGAATGAAATGCAGTCTGTTCAATTGGAGCAGGCAATACACAAAACGGCTGTTGTGAGTGAAGATGTTGGTGGGAGTGGTGGGATTGAATTGCCCTCCCAAACTGAAAACCATGCGAAACGGGAGCATCAGGGGAGCGTGCCAGTCCTTACCCGAGCTGAAACAAAGAGAAACGATGTGCTAGATATAAATCAGGATTCGGGTGTCAACGACAATTCTAAACGATCGTCCACTGTTGAAATGAACACTGAGAGAGTTCAAGAGTTGCCTACAGAAACAACGGAAGGGAAAGAATCAGTTGAGAAGGAAGTTACAGTTTTGCAAGATCCAAGCCCAAACTGCCGCAAAAATTTGAAGACTTCTGTCTTGCCAAGATGCAAATCCCTTGCATCCCATAAGCGTGTTAGAGGAGGGGCTAAAATTGGTCATCTTGAGGACTTGGAGAATGACAGTTCATCTGGAAAGTCTACTTGCCTACAAACTCCAGAATTTGATCGGGTACGAGAAGCGTTTAAAACCAGCTCTTTAGAGCTGCAAGCATTGGTTAAAGATCCACTTCCTGATGCATTACGCATTGCGGAATCTGTAGCTCAAGATCTTGCTAAAAAGAATAAAACTCCTGAGCATTCTTTGGAGGACCAAAATGATGCAGTTGCTGCGAATCCAGCCATTAACAAGGATAATATGCCTCTTCAATCCATGAATACAGCTTTCAACAATCCACGCCATGGCCATCAGACAATTGTTCCACGACCTAGTATAATGGAGCGCAACAGTTCGGCTTGTACATATGAGTGGAATGATTCAATAGATGGTTCTCCGGAAAGAAATCGCGCTAGCCGACTTCACCTACCTAGTCCCAAGAGAAAGGTCATTTCTCCCTTGAAGAAGTATGAAGAAACCAGACTGGTTTGGAGAAGGAAGTGTAAGAGGTGGAGCTTGCTTGAAGAAGATACCTTAAGAACTGCTGTGCAAAGGTTTGGTAAAGGAAATTGGAAGCTCATCTTAAATAGCTATCGTGAAATATTTGATGAAAGAACAGAGGTTGATTTGAAGGATAAGTGGAGAAACATGACCCGATACTAA

Protein sequence

MDKDVCRWIIEFILRSSMNDQLLKRTLAIMPFPDNDFRLKKTVLLRAIESERSEAIVTEKVLAIFEMIEQLDKTEGLAMMDSMKSAYCAVAVECTVKYLAVEGMKNNGKYFDTVSRIWRGRVMELKRSGRSELVSRELEEWKDKVEAALWDKTVWKKLVNMNSRYEALKLIGDYLGEAWGVLGPSFLELSASLMDNRTRNEMQSVQLEQAIHKTAVVSEDVGGSGGIELPSQTENHAKREHQGSVPVLTRAETKRNDVLDINQDSGVNDNSKRSSTVEMNTERVQELPTETTEGKESVEKEVTVLQDPSPNCRKNLKTSVLPRCKSLASHKRVRGGAKIGHLEDLENDSSSGKSTCLQTPEFDRVREAFKTSSLELQALVKDPLPDALRIAESVAQDLAKKNKTPEHSLEDQNDAVAANPAINKDNMPLQSMNTAFNNPRHGHQTIVPRPSIMERNSSACTYEWNDSIDGSPERNRASRLHLPSPKRKVISPLKKYEETRLVWRRKCKRWSLLEEDTLRTAVQRFGKGNWKLILNSYREIFDERTEVDLKDKWRNMTRY

Homology

[Close]

BLAST of CmaCh02G006970 vs. ExPASy Swiss-Prot
Match: O55036 (Telomeric repeat-binding factor 1 (Fragment) OS=Cricetulus griseus OX=10029 GN=TERF1 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-06
Identity = 33/87 (37.93%), Postives = 47/87 (54.02%), Query Frame = 0


Query: 473 ERNRASRLHLPSPKRKVISPLKKYEETRLVWRRKCKRWSLLEED-TLRTAVQRFGKGNWK 532
           E  RA+   +P  K + ++P K     R  W        L EED  LR+ V+++G+GNW 
Sbjct: 353 ESRRATESRIPVSKSQPVTPEKHRARKRQAW--------LWEEDKNLRSGVRKYGEGNWS 412

Query: 533 LILNSYREIFDERTEVDLKDKWRNMTR 559
            IL  Y+  F+ RT V LKD+WR M +
Sbjct: 413 KILLHYK--FNNRTSVMLKDRWRTMKK 429

[Close]

BLAST of CmaCh02G006970 vs. ExPASy Swiss-Prot
Match: P54274 (Telomeric repeat-binding factor 1 OS=Homo sapiens OX=9606 GN=TERF1 PE=1 SV=3)

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-06
Identity = 33/87 (37.93%), Postives = 47/87 (54.02%), Query Frame = 0


Query: 473 ERNRASRLHLPSPKRKVISPLKKYEETRLVWRRKCKRWSLLEED-TLRTAVQRFGKGNWK 532
           E  RA+   +P  K + ++P K     R  W        L EED  LR+ V+++G+GNW 
Sbjct: 353 ESRRATESRIPVSKSQPVTPEKHRARKRQAW--------LWEEDKNLRSGVRKYGEGNWS 412

Query: 533 LILNSYREIFDERTEVDLKDKWRNMTR 559
            IL  Y+  F+ RT V LKD+WR M +
Sbjct: 413 KILLHYK--FNNRTSVMLKDRWRTMKK 429

[Close]

BLAST of CmaCh02G006970 vs. ExPASy Swiss-Prot
Match: Q6WLH3 (Single myb histone 5 OS=Zea mays OX=4577 GN=SMH5 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.5e-05
Identity = 26/51 (50.98%), Postives = 31/51 (60.78%), Query Frame = 0


Query: 508 KRWSLLEEDTLRTAVQRFGKGNWKLILN--SYREIFDERTEVDLKDKWRNM 557
           +RW+  EE  LR  V R G GNW++ILN          R+ VDLKDKWRNM
Sbjct: 6   QRWTSEEEAALRAGVARHGVGNWRMILNDPELSSTLRYRSNVDLKDKWRNM 56

[Close]

BLAST of CmaCh02G006970 vs. ExPASy Swiss-Prot
Match: P70371 (Telomeric repeat-binding factor 1 OS=Mus musculus OX=10090 GN=Terf1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.0e-05
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 504 RRKCKRWSLLEEDTLRTAVQRFGKGNWKLILNSYREIFDERTEVDLKDKWRNMTR 559
           RRK + W   E+  L+  V+++G+GNW  IL+ Y+  F+ RT V LKD+WR M R
Sbjct: 364 RRKRQTWLWEEDRILKCGVKKYGEGNWAKILSHYK--FNNRTSVMLKDRWRTMKR 416

[Close]

BLAST of CmaCh02G006970 vs. ExPASy Swiss-Prot
Match: Q9C7B1 (Telomere repeat-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=TRP3 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-05
Identity = 37/116 (31.90%), Postives = 61/116 (52.59%), Query Frame = 0


Query: 446 IVPRPSIMERNSSACTYEWNDSIDGSPERNRASRLHLPSPKRKV----ISPL-KKYEETR 505
           ++   +I++ N     Y+ + S+D   E +  S+  +P P+ +V    I PL +K + T 
Sbjct: 446 VIDSRNIVDSNLELVPYQGDISVD---EPSSDSKELVPLPELEVKALAIVPLNQKPKRTE 505

Query: 506 LVWRRKCKRWSLLEEDTLRTAVQRFGKGNWKLILNSYREIFDERTEVDLKDKWRNM 557
           L  RR  + +S+ E + L  AV+  G G W+ +     E  D RT VDLKDKW+ +
Sbjct: 506 LAQRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFEDADHRTYVDLKDKWKTL 558

[Close]

BLAST of CmaCh02G006970 vs. TAIR 10
Match: AT1G15720.1 (TRF-like 5 )

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-26
Identity = 136/553 (24.59%), Postives = 213/553 (38.52%), Query Frame = 0


Query: 7   RWIIEFILRSSMNDQLLKRTL--AIMPFPDND-FRLKKTVLLRAIESERSEAIVTEKVLA 66
           +W+ EF LR  +N ++    L  A+ P   +D  +LK T +LR I +   +  V E +L 
Sbjct: 6   KWVAEFFLRRQLNPRVYAFPLLSALKPVDSDDCVKLKLTAVLRDISNSMIQGTVDEGMLD 65

Query: 67  IFEMIEQLDKTEGLAMMDSMKSAYCAVAVECTVKYLAVEGMKNNGKYFDTVSRIWRGRVM 126
           + E++E+L   E   +M S+KSAYC  AVECT++++      ++G + D + RIWR R+ 
Sbjct: 66  LLEILEKLLLQEHSVIMGSLKSAYCWTAVECTLRFMWPVN-ASDGFFGDALERIWRNRIG 125

Query: 127 ELKRSGRSELVSRELEEWKDKVEAALWDKTVWKKLVNMNSRYEALKLIGDYLGEAWGVLG 186
            LK    S+LV+REL +W+  +  A  +  +++K+   N RY A+  +   L E W +LG
Sbjct: 126 TLKEK-ESDLVTRELLKWESDLNKAFEEPEIYQKIRETNIRYNAISHLNQLLKEQWALLG 185

Query: 187 PSFLELSASLMDNRTRNEMQSVQLEQAIHKTAVVSEDVGGSGGIELPSQTENHAKREHQG 246
            S LE  A                                          +   KR+   
Sbjct: 186 CSSLESEA-----------------------------------------RKRFLKRKDS- 245

Query: 247 SVPVLTRAETKRNDVLDINQDSGVNDNSKRSSTVEMNTERVQELPTETTEGKESVEKEVT 306
             P  +R    R    D+ +  GV                      E  +G   V +   
Sbjct: 246 --PYASRRGGNREKANDVEEVGGV----------------------ENPDGVGKVNE--- 305

Query: 307 VLQDPSPNCRKNLKTSVLPRCKSLASHKRVRGGAKIGHLEDLENDSSSGKSTCLQTPEFD 366
                                                   + E++ S  K   L      
Sbjct: 306 ---------------------------------------HEQEHEPSLNKGEML------ 365

Query: 367 RVREAFKTSSLELQALVKDPLPDALRIAESVAQDLAKKNKTPEHSLEDQNDAVAANPAIN 426
            V    K   LE+Q L+ DP              + ++++ P +++E   D         
Sbjct: 366 -VARELKDFLLEIQRLI-DP--------------ITRQDQEPNNAMEHSVD--------- 386

Query: 427 KDNMPLQSMNTAFNNPRHGHQTIVPRPSIMERNSSACTYEWNDSIDGSPERNRASRLHLP 486
                                 + P+P    R  +       +  +G+    R  R HLP
Sbjct: 426 ----------------------VTPQPDGANRTDA-------EDSEGTSSSRRV-RPHLP 386

Query: 487 SPKRKVISPLKKYEETRLVWRRKCKRWSLLEEDTLRTAVQRFGKGNWKLILNSYREIFDE 546
           +P+   +SPLKK    R   RR  K W+  E   LR  V+ +GK +WK I NSY  +F +
Sbjct: 486 TPEPLNVSPLKKGRLERPRPRRPMKFWTSEEVAALREGVKEYGK-SWKDIKNSYPVVFAD 386

Query: 547 RTEVDLKDKWRNM 557
           R+EVDLKDKWRN+
Sbjct: 546 RSEVDLKDKWRNL 386

[Close]

BLAST of CmaCh02G006970 vs. TAIR 10
Match: AT5G58340.1 (myb-like HTH transcriptional regulator family protein )

HSP 1 Score: 113.2 bits (282), Expect = 6.6e-25
Identity = 139/554 (25.09%), Postives = 230/554 (41.52%), Query Frame = 0


Query: 7   RWIIEFILRSSMNDQLLK-RTLAIMPFPDND--FRLKKTVLLRAIESERSEAIVTEKVLA 66
           +W+ EF L    N +      ++ +   D+    +LK + +LR I +      + E +L 
Sbjct: 6   QWVAEFFLLRQHNPRASPINLISALKLGDSSDCIKLKISSVLRDISNSLIRGTIDEGMLD 65

Query: 67  IFEMIEQLDKTEGLAMMDSMKSAYCAVAVECTVKYLAVEGMKNNGKYFDTVSRIWRGRVM 126
           + E++E+L   +   +MDS KSAYC  A ECT++++      ++G + D + RIW  R+ 
Sbjct: 66  LLEILEKLLLQQHSLLMDSHKSAYCWTATECTLRFM-WPMFASDGLFTDALERIWTKRIG 125

Query: 127 ELKRSGRSELVSRELEEWKDKVEAALWDKTVWKKLVNMNSRYEALKLIGDYLGEAWGVLG 186
            LK SG S+LV+ +L +W+  ++ AL D  +++++   N RY A+  +   L E W +LG
Sbjct: 126 ILKESG-SDLVTCDLLKWESDLKKALGDPELYQRIRETNIRYTAISFLTQLLKEQWALLG 185

Query: 187 PSFLELSASLMDNRTRNEMQSVQLEQAIHKTAV-VSEDVGGSGGIELPSQTENHAKREHQ 246
            S LE               SV   + + + AV V  DV  + G +  S  +   +R   
Sbjct: 186 SSSLE---------------SVAQRRFLKRKAVNVEGDVVDNRGDQ--SDVDESTRRFGS 245

Query: 247 GSVPVLTRAETKRNDVLDINQDSGVNDNSKRSSTVEMNTERVQELPTETTEGKESVEKEV 306
            ++ +   A  +R D   I +D+  ND            E ++ L  +  +   + ++E 
Sbjct: 246 DTIDIANEARGEREDGNGIGRDN-ANDG-----------EGMECLENDGIDNVNAADEEH 305

Query: 307 TVLQDPSPNCRKNLKTSVLPRCKSLASHKRVRGGAKIGHLEDLENDSSSGKSTCLQTPEF 366
           TV                                      +D E++ S  K   +   E 
Sbjct: 306 TV------------------------------------SAQDQEHEPSLDKGDEMAARE- 365

Query: 367 DRVREAFKTSSLELQALVKDPLPDALRIAESVAQDLAKKNKTPEHSLEDQNDAVAANPAI 426
                  K   +E+Q  + DP                ++ + P  +++   D       +
Sbjct: 366 ------LKEYLVEIQGHI-DP--------------STRQGEEPNSAIDHSVDVTPPPTRV 425

Query: 427 NKDNMPLQSMNTAFNNPRHGHQTIVPRPSIMERNSSACTYEWNDSIDGSPERNRASRLHL 486
           N+     Q  N A +N             + E+ S        DS +    R R  R   
Sbjct: 426 NRTGTGCQDHNEASDN-------------VNEKGS--------DSQETWSSRVRPRR--- 445

Query: 487 PSPKRKVISPLKKYEETRLVWRRKCKRWSLLEEDTLRTAVQRFGKGNWKLILNSYREIFD 546
           P+P    +SPLKK    +   RR  K W   E + LR  V+ +GK +WK I N    +F 
Sbjct: 486 PTPVTLSVSPLKKGGLAKPHVRRPKKFWKPEEVEALREGVKEYGK-SWKDIKNGNPTVFA 445

Query: 547 ERTEVDLKDKWRNM 557
           ERTEVDLKDKWRN+
Sbjct: 546 ERTEVDLKDKWRNL 445

[Close]

BLAST of CmaCh02G006970 vs. TAIR 10
Match: AT5G58340.2 (myb-like HTH transcriptional regulator family protein )

HSP 1 Score: 113.2 bits (282), Expect = 6.6e-25
Identity = 139/554 (25.09%), Postives = 230/554 (41.52%), Query Frame = 0


Query: 7   RWIIEFILRSSMNDQLLK-RTLAIMPFPDND--FRLKKTVLLRAIESERSEAIVTEKVLA 66
           +W+ EF L    N +      ++ +   D+    +LK + +LR I +      + E +L 
Sbjct: 6   QWVAEFFLLRQHNPRASPINLISALKLGDSSDCIKLKISSVLRDISNSLIRGTIDEGMLD 65

Query: 67  IFEMIEQLDKTEGLAMMDSMKSAYCAVAVECTVKYLAVEGMKNNGKYFDTVSRIWRGRVM 126
           + E++E+L   +   +MDS KSAYC  A ECT++++      ++G + D + RIW  R+ 
Sbjct: 66  LLEILEKLLLQQHSLLMDSHKSAYCWTATECTLRFM-WPMFASDGLFTDALERIWTKRIG 125

Query: 127 ELKRSGRSELVSRELEEWKDKVEAALWDKTVWKKLVNMNSRYEALKLIGDYLGEAWGVLG 186
            LK SG S+LV+ +L +W+  ++ AL D  +++++   N RY A+  +   L E W +LG
Sbjct: 126 ILKESG-SDLVTCDLLKWESDLKKALGDPELYQRIRETNIRYTAISFLTQLLKEQWALLG 185

Query: 187 PSFLELSASLMDNRTRNEMQSVQLEQAIHKTAV-VSEDVGGSGGIELPSQTENHAKREHQ 246
            S LE               SV   + + + AV V  DV  + G +  S  +   +R   
Sbjct: 186 SSSLE---------------SVAQRRFLKRKAVNVEGDVVDNRGDQ--SDVDESTRRFGS 245

Query: 247 GSVPVLTRAETKRNDVLDINQDSGVNDNSKRSSTVEMNTERVQELPTETTEGKESVEKEV 306
            ++ +   A  +R D   I +D+  ND            E ++ L  +  +   + ++E 
Sbjct: 246 DTIDIANEARGEREDGNGIGRDN-ANDG-----------EGMECLENDGIDNVNAADEEH 305

Query: 307 TVLQDPSPNCRKNLKTSVLPRCKSLASHKRVRGGAKIGHLEDLENDSSSGKSTCLQTPEF 366
           TV                                      +D E++ S  K   +   E 
Sbjct: 306 TV------------------------------------SAQDQEHEPSLDKGDEMAARE- 365

Query: 367 DRVREAFKTSSLELQALVKDPLPDALRIAESVAQDLAKKNKTPEHSLEDQNDAVAANPAI 426
                  K   +E+Q  + DP                ++ + P  +++   D       +
Sbjct: 366 ------LKEYLVEIQGHI-DP--------------STRQGEEPNSAIDHSVDVTPPPTRV 425

Query: 427 NKDNMPLQSMNTAFNNPRHGHQTIVPRPSIMERNSSACTYEWNDSIDGSPERNRASRLHL 486
           N+     Q  N A +N             + E+ S        DS +    R R  R   
Sbjct: 426 NRTGTGCQDHNEASDN-------------VNEKGS--------DSQETWSSRVRPRR--- 445

Query: 487 PSPKRKVISPLKKYEETRLVWRRKCKRWSLLEEDTLRTAVQRFGKGNWKLILNSYREIFD 546
           P+P    +SPLKK    +   RR  K W   E + LR  V+ +GK +WK I N    +F 
Sbjct: 486 PTPVTLSVSPLKKGGLAKPHVRRPKKFWKPEEVEALREGVKEYGK-SWKDIKNGNPTVFA 445

Query: 547 ERTEVDLKDKWRNM 557
           ERTEVDLKDKWRN+
Sbjct: 546 ERTEVDLKDKWRNL 445

[Close]

BLAST of CmaCh02G006970 vs. TAIR 10
Match: AT1G06910.1 (TRF-like 7 )

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-12
Identity = 127/517 (24.56%), Postives = 195/517 (37.72%), Query Frame = 0


Query: 41  KTVLLRAIESERSEAIVTEKVLAIFEMIEQLDKTEGLAMMDSMKSAYCAVAVECTVKYLA 100
           K  +L  I  E  + IV EK L   E + ++   EG  +  S+  AYC VAVECTVK LA
Sbjct: 7   KEAILEGIFMEIEDGIVEEKNLERLENLVEILHKEGSKVPKSVTEAYCKVAVECTVKCLA 66

Query: 101 VEGMKNNGKYFDTVSRIWRGRVMELKRSGRSELVSRELEEWKDKVEAALWDKTVWKKLVN 160
            E       Y + +  IW GR+M L     S LV+ +L +   ++  A  D    K L++
Sbjct: 67  YEKDAKKA-YTEAIKTIWLGRIMPL-CDKVSCLVTLDLLKCCRRLWKAHTDDKACKTLMD 126

Query: 161 MNSRYEALKLIGDYLGEAWGVLGPSFLELSASL-MDNRTRNEMQSVQLEQAIHKTAVVSE 220
            ++R +AL  +   +           L+L+ +L ++N   +E   ++  +   +T  + E
Sbjct: 127 EDTRDKALVCLRKVV-----------LDLNPNLVLENLNMDESDEIESSEESEETESMVE 186

Query: 221 DVGGSGGIELPSQTENHAKREHQGSVPVLTRAETKRNDVLDINQDSGVNDNSKRSSTVEM 280
              G G                                          N NS+ S  +E 
Sbjct: 187 AREGVG------------------------------------------NQNSQASEAME- 246

Query: 281 NTERVQELPTETTEGKESVEKEVTVLQDPSPNCRKNLKTSVLPRCKSLASHKRVRGGAKI 340
                        + +ES+    T L+ P+                         GG+K 
Sbjct: 247 ------------EDDQESLLD--TELERPT------------------------SGGSKA 306

Query: 341 GHLEDLENDSSSGKSTCLQTPEFDRVREAFKTSSLELQALVKDPLPDALRIAESVAQDLA 400
            ++    N         + +   DR     + S +EL   ++   P              
Sbjct: 307 VYVPSQFNP--------IPSAVVDRALRKLRASKIELMKALEKGRP-------------- 366

Query: 401 KKNKTPEHSLEDQNDAVAANPAINKDNMPLQSMNTAFNNPRHGHQTIVPRPSIMERNSSA 460
             N   E   E +ND   ANP+         + N A            PRPS+ME  S+A
Sbjct: 367 -SNLNNETITEQEND--VANPS---------ATNAA------------PRPSLMEPRSTA 380

Query: 461 CTYEWNDSIDGSPER--NRASRLHLPSPKRKVISPLKKYEETRLVWRRKCKRWSLLEEDT 520
            TYEWNDSID S     +   R++    KR V+SPLK+   +    R K   WS  E   
Sbjct: 427 HTYEWNDSIDDSDGEMGDDIERINKSKRKRIVVSPLKRNRCSEGARRPKLP-WSTAETLA 380

Query: 521 LRTAVQRFGKGNWKLILNSYREIFDERTEVDLKDKWR 555
           +    +++G  NWK I +    +   RT  D+KDK+R
Sbjct: 487 VLKGYEKYG-ANWKRIKDE-NPVLVRRTNGDIKDKFR 380

[Close]

BLAST of CmaCh02G006970 vs. TAIR 10
Match: AT3G12560.1 (TRF-like 9 )

HSP 1 Score: 52.0 bits (123), Expect = 1.8e-06
Identity = 37/116 (31.90%), Postives = 61/116 (52.59%), Query Frame = 0


Query: 446 IVPRPSIMERNSSACTYEWNDSIDGSPERNRASRLHLPSPKRKV----ISPL-KKYEETR 505
           ++   +I++ N     Y+ + S+D   E +  S+  +P P+ +V    I PL +K + T 
Sbjct: 446 VIDSRNIVDSNLELVPYQGDISVD---EPSSDSKELVPLPELEVKALAIVPLNQKPKRTE 505

Query: 506 LVWRRKCKRWSLLEEDTLRTAVQRFGKGNWKLILNSYREIFDERTEVDLKDKWRNM 557
           L  RR  + +S+ E + L  AV+  G G W+ +     E  D RT VDLKDKW+ +
Sbjct: 506 LAQRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFEDADHRTYVDLKDKWKTL 558

The following BLAST results are available for this feature:

BLAST of CmaCh02G006970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O55036	1.8e-06	37.93	Telomeric repeat-binding factor 1 (Fragment) OS=Cricetulus griseus OX=10029 GN=T...	[more]
P54274	1.8e-06	37.93	Telomeric repeat-binding factor 1 OS=Homo sapiens OX=9606 GN=TERF1 PE=1 SV=3	[more]
Q6WLH3	1.5e-05	50.98	Single myb histone 5 OS=Zea mays OX=4577 GN=SMH5 PE=2 SV=1	[more]
P70371	2.0e-05	45.45	Telomeric repeat-binding factor 1 OS=Mus musculus OX=10090 GN=Terf1 PE=1 SV=1	[more]
Q9C7B1	2.6e-05	31.90	Telomere repeat-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=TRP3 PE=1 S...	[more]

BLAST of CmaCh02G006970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15720.1	1.6e-26	24.59	TRF-like 5	[more]
AT5G58340.1	6.6e-25	25.09	myb-like HTH transcriptional regulator family protein	[more]
AT5G58340.2	6.6e-25	25.09	myb-like HTH transcriptional regulator family protein	[more]
AT1G06910.1	1.3e-12	24.56	TRF-like 7	[more]
AT3G12560.1	1.8e-06	31.90	TRF-like 9	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 506..559 e-value: 6.0E-7 score: 39.1
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 509..557 score: 7.56108
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 508..556 e-value: 2.3E-7 score: 30.9
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 509..559 score: 10.592953
None	No IPR available	GENE3D	1.10.246.220		coord: 510..559 e-value: 1.6E-16 score: 62.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 261..287
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 261..301
None	No IPR available	PANTHER	PTHR46993:SF6	MYB TRANSCRIPTION FACTOR	coord: 1..559
None	No IPR available	PANTHER	PTHR46993	MYB TRANSCRIPTION FACTOR	coord: 1..559
None	No IPR available	CDD	cd11660	SANT_TRF	coord: 508..558 e-value: 9.76316E-17 score: 72.2147
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 509..558

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G006970.1	CmaCh02G006970.1	mRNA