CmaCh02G006720 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G006720
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Transcription factor bHLH14
Location	Cma_Chr02: 4088239 .. 4089996 (+)
RNA-Seq Expression	CmaCh02G006720
Synteny	CmaCh02G006720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTTCTGTGGGAGAAGAGCGAGTCATGGAGATGGATAGTGAGGAAAACCAGAGATTCAAAGCCTTTCTTCTTGGCCTTCGCCACCGTCTGCGGCGTCGTTCCCGGCGTTATTGGCTACTGCGTTATGCAGGCCACCAATTCCCGCAACGAGCAACTCGAAGCCCGCCTCCGCCAGAATGCTAGACCTGAATCTCTCGTATGTTCCTTTCTCTCTCCAAAACCCTATTATCATCGCAATTTTGATCCATATATCTCTGATTGAGTTTATTTTATTGATAAATTTCTGTCCGTCCGACATTTCGCGACTCGGCGATCGCGTAAAATTCGACCTGCTGCTCTACTGTGATGATTATTATCTATTTATTCCATGGACTTACCTGATTATTCGATTGAAAACCTAAGATTTTTCTTTTTTCAATTTTGTTCTTGAGCTGCCTGCTATGTTTGAATCTGTTTTCCTTGATCAGACCTCTAATTTCCATGGTGTCGTTGTTAACAATTCGAAATGCCGCATTCTATTTTGTCATTTGAAATGCCGCCTCATTCAGTATATGAAGAACGCAGCATTCAGTTTCTTTCTTCAGACCAGTTAATTCTCTTCTGCACCTTGTCATTTGAGCTGCATCGAATTTGCTGGCTGCTGCTTTGCTTTCATGTGTTTCAACACCTATTTCCGTCCACTATATTTTCGTTAACTGCTTCCATCTTTTGAGACTTCGGTCATTGCTGCTCTTATAAAACTATAACCTGTCGATAACCATTTTTTGTTTCTGAATTCTGGAAATTCAACTTGTTTCTCATCAAATCAATTGCCTACCTTGAGTTTTATCCGAATTCATAGCCAAATTCCTAGAACTCCCTTTTTGGAATTCAAAACTTGGCTTAGTTTTTTAAAATATAGGTAAAAAGTTGATCACAAAGCAAGGAATCCATAGGTGGAAGCAGTCTAAAACAGCAAACCGAAAGGTTATCAAACGGGGTTATGTATTTTGAGTTCATGGGGCTGTAAGAATTTTTATGTATTAAATTTGTGTGAGATCTCACATCGGTTGGAAAGGAGAACGATATAAGGGTATGTAAACCTCTCCCTAGTAGACACATACTAGGAAGCCCGAAATGGAAAGCTGAAAGAGGACAATATCTGTTAACGGGAAGACACATACTAGTAAGCCCGAAATGGAAAGCCGAAAGAGGACAATATCTGTTAATGGGAGGCTTGGGCCGTTACAATTTGTCTGCAGTCGTAGGTTTAATCTTTACATGTTAGAATTGTGTTCATCAGGTGTTTTGCTTCTCAATGTTGATATTTAAATCCAGATGATGGGGAGAGTGAATCGAGAGAGACTGGCAGAATATCTAGGCGAGTTGCAGAGGAAAGAGGACACAAACGATCGCTATGTTGCTGCTTTGAGGGGAGAGACATTGACAAGGAAGCCATATGTGAGAATCCAACCAATCCCAAGCCAAAGCAACGAGGTCGCTGACAAGAACCAACAGGTCAAGAAGGAAAATAAATAAACGGGTACGTGTGGGTTAGATTTTGTAATGCAATCTTACTGTTTTTGGGTTTGTTTATCCTTACAGGACAGGCTCTTAAAGCTTAAGAACTTTGTATGCGGAAGCCCTGTTTAATTCAAATGCTTTATGTTACTATGGAGTTAGTCCTCATACTCATTGACAAGCTCTGTCAAGCTAATGGCAATTTTATACAATTGGACTAATGATCACTAAATTTCACATTCGGTCCAGATCT

mRNA sequence

ATGTCGTTTCTGTGGGAGAAGAGCGAGTCATGGAGATGGATAGTGAGGAAAACCAGAGATTCAAAGCCTTTCTTCTTGGCCTTCGCCACCGTCTGCGGCGTCGTTCCCGGCGTTATTGGCTACTGCGTTATGCAGGCCACCAATTCCCGCAACGAGCAACTCGAAGCCCGCCTCCGCCAGAATGCTAGACCTGAATCTCTCATGATGGGGAGAGTGAATCGAGAGAGACTGGCAGAATATCTAGGCGAGTTGCAGAGGAAAGAGGACACAAACGATCGCTATGTTGCTGCTTTGAGGGGAGAGACATTGACAAGGAAGCCATATGTGAGAATCCAACCAATCCCAAGCCAAAGCAACGAGGTCGCTGACAAGAACCAACAGGTCAAGAAGGAAAATAAATAAACGGGTACGTGTGGGTTAGATTTTGTAATGCAATCTTACTGTTTTTGGGTTTGTTTATCCTTACAGGACAGGCTCTTAAAGCTTAAGAACTTTGTATGCGGAAGCCCTGTTTAATTCAAATGCTTTATGTTACTATGGAGTTAGTCCTCATACTCATTGACAAGCTCTGTCAAGCTAATGGCAATTTTATACAATTGGACTAATGATCACTAAATTTCACATTCGGTCCAGATCT

Coding sequence (CDS)

ATGTCGTTTCTGTGGGAGAAGAGCGAGTCATGGAGATGGATAGTGAGGAAAACCAGAGATTCAAAGCCTTTCTTCTTGGCCTTCGCCACCGTCTGCGGCGTCGTTCCCGGCGTTATTGGCTACTGCGTTATGCAGGCCACCAATTCCCGCAACGAGCAACTCGAAGCCCGCCTCCGCCAGAATGCTAGACCTGAATCTCTCATGATGGGGAGAGTGAATCGAGAGAGACTGGCAGAATATCTAGGCGAGTTGCAGAGGAAAGAGGACACAAACGATCGCTATGTTGCTGCTTTGAGGGGAGAGACATTGACAAGGAAGCCATATGTGAGAATCCAACCAATCCCAAGCCAAAGCAACGAGGTCGCTGACAAGAACCAACAGGTCAAGAAGGAAAATAAATAA

Protein sequence

MSFLWEKSESWRWIVRKTRDSKPFFLAFATVCGVVPGVIGYCVMQATNSRNEQLEARLRQNARPESLMMGRVNRERLAEYLGELQRKEDTNDRYVAALRGETLTRKPYVRIQPIPSQSNEVADKNQQVKKENK

Homology

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BLAST of CmaCh02G006720 vs. TAIR 10
Match: AT1G79390.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 188.3 bits (477), Expect = 3.9e-48
Identity = 89/126 (70.63%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MSFLWEKSESWRWIVRKTRDSKPFFLAFATVCGVVPGVIGYCVMQATNSRNEQLEARLRQ 60
           MSF++EKS +WRW+V KTRDS+ FF  FA +CGV+PGVIGY VMQ TNS N +LEARLR+
Sbjct: 1   MSFMYEKSNTWRWLVMKTRDSRSFFFTFAALCGVIPGVIGYGVMQVTNSSNPELEARLRK 60

Query: 61  NARPESLMMGRVNRERLAEYLGELQRKEDTNDRYVAALRGETLTRKPYVRIQPIPSQSNE 120
           +ARP++LMMG+VN+ERLAEYLGEL++K+DTNDRYVAALRGETLTRKPY RIQP+P   + 
Sbjct: 61  SARPDTLMMGKVNQERLAEYLGELKQKQDTNDRYVAALRGETLTRKPYQRIQPMPKPDDT 120

Query: 121 VADKNQ 127
           V  K Q
Sbjct: 121 VTTKTQ 126

The following BLAST results are available for this feature:

BLAST of CmaCh02G006720 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G006720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79390.1	3.9e-48	70.63	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..133
None	No IPR available	PANTHER	PTHR36338	OS02G0495900 PROTEIN	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G006720.1	CmaCh02G006720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane