CmaCh02G005390 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G005390
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein SHORT-ROOT-like isoform X1
Location	Cma_Chr02: 2967857 .. 2970156 (+)
RNA-Seq Expression	CmaCh02G005390
Synteny	CmaCh02G005390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAAATCAAACCCACAAAATTTCCCCTTTTTTCTCCTGTTCTTCAAGTGTTCTTATTAATGGATACTTTGTTCAGGCTTGTCTCCAACCTTCAACCTTCTGATCAATCTTACAACTCAAGCACCAGCTCCAAGAATTCTGTCGATCTTCAAAATCATTGTTTCCTTAACCCACCACCACCTGAACAATGCTTCACCAGCTCATTCATGGTGGATCAACCACATTTCTCTGCCTCCTCTTCTTCCAACCATCGTCCTGATAAGGACCATGTTCATCAAGATCACGAGTATATAAGTAAGGAACATTATTTTTATTAGTATGGGACCATTTAAGAAAAGATGTTCAAAATAAACGAAATCATACTGATTGTTTATTTGTATTCTTATTAGGTACTATCAATTCGACTGATCGCTGGTTCGCCCCTTTAGACGTGAACTTGGAATTCTCTAATGGTTGGGCTTCTACGTTGATTGTCCAAACTGCCATTGCCATTGTTGATAACAACGCTTCTCAAATCCAACAACTCATGTGGATGCTTAACGAGCTCGGTTCACCCTATGGCGACATTGATCAAAAACTAGCTTTTTACTTTCTTCGAGCTATGTTTAGTCATGTCACGAACTCTGGTGAACGGTGCTACCAGACCTTGGCAATGGTGTCGGAGAAACGGTCTTGTTTCGCGTCGATGAGAAGAATGGTGTTGAAGTTTCAAGAGGTGAGTCCATGGATGACGTTTGGTCATGTTGCTTCAAATGGTGTTATCATGGAGGCTTTTGAAGGAGAAAAGAAGTTGCATATAATTGATATTAGCAACTCCTTTTGTACTCAATGGCCGACTTTCCTTGAAGCTCTAGCATCTCGGTCAGACGAAACTCCACACCTTAGGCTCACGACGCTAGTCGTAGCGAGATCGGATAAGGTTTGAAATTTATAAATTTATGTTATATTTGTTGAGAGGGAGTCACACGTTCGCTAATTAGAGGAATGAGACATTTTTGAAAACCAAAAAGCTCACATCTCATGCTCAAAGTGGACACTCAGGAGGCTCTCCTTCCTTATAGGGTGTATACAAGTTTAGTTGGAAATTTCAAATTAATTATTGGGTCAATAATTCAAGTTTTTAGGTTGGGTGGGTCTTATTTTTTAATTATTTAAAAAAATATATACTTTCAAATACAAAACATCTACCAATGGGTTCAGTAATTCGAGTTTTTAGGTTCAGAGTGGTTGAGCCCTTGAGTTGTTCTTAGTTTTGTTCCTATTTTTTAATTATTTTAAAAAAATTATACTTTCAAATATCAAATCTTTACAAATTAAGATCAGTAATAAAATAAATTTAAACTATTTAAAAAAAAATTTAATGAAGTTATTTTTATTTTATAATTTTTCTTTTAGAAATGGTTAATAAATATATAGATAAAATAAAATAAATTATTCTTGTATTTACGTAAATGGATTTGCAGAAGATGATGAGAGAAATTAGCAGAAGAATGGAGAAATTCGCGAGGCTTATGGGGGTTCCCTTCAAATTCAAAGCAATATATTACTCCGGCGATATTTCACAGCTAAATTTCACGGAGTTAGGGGTTAATGACGACGAAGCCCTTGCCATTAACTGCGTCGGCGCCTTCCGCTCCGTCACGCCCGTCGACAACCGCCGCGATTTTCTGATTTCGCTGTTCGGAGCTTTGCGGCCGAGGATAATCACTGTGGTGGAGGAGCAGGCAGATCTCGATAGCGACGGCGTTGACTTTGTCAAAGACGTTCAAGAATGTTTACGGTGGTTTAGGGTTTACTTTGATTCCTTGGACGGAAGTTTCCCTTCCACAAGTGATGAAAAGTTGATGCTCGAACGCGCCGCTGGACGCGCTATCGTGGACTTGCTTGCACGCGCGCCAGCGGAGTGTGTTGAGAGGCGCGAGACGGCTGCGCGTTGGGCTCGTCGTTTGCATGAGGGTGGTTTTAAACCGGTGTCGTTTAGTGAGGATGTAAACGACGACGTACGTGCGCTTTTAAGGAAGTATAAGGATGGGTGGACGGTGTTGGATGACGGCGAGGGCGCCGATGCCGGAATTTTCTTGGCTTGGAAGGGGCAGGCGGTGGTTTGGGCCGCCGCATGGACGCCTGAACCACTGGACGGAGAGAAGAGTCGCCAGAGTAGTTGTTCACATTGAAAAAGATATCTCTCTATTTGGTTTTTCTTCTCCGTTTTGTGATTTTGGCCCCCCCTTTTTTTTTCCATTTGTGATTTGAGATTTACTTTGTAATATTAAAATCTTTTAGTAATGTTATTAACAAAC

mRNA sequence

TTCAAATCAAACCCACAAAATTTCCCCTTTTTTCTCCTGTTCTTCAAGTGTTCTTATTAATGGATACTTTGTTCAGGCTTGTCTCCAACCTTCAACCTTCTGATCAATCTTACAACTCAAGCACCAGCTCCAAGAATTCTGTCGATCTTCAAAATCATTGTTTCCTTAACCCACCACCACCTGAACAATGCTTCACCAGCTCATTCATGGTGGATCAACCACATTTCTCTGCCTCCTCTTCTTCCAACCATCGTCCTGATAAGGACCATGTTCATCAAGATCACGAGTATATAAGTACTATCAATTCGACTGATCGCTGGTTCGCCCCTTTAGACGTGAACTTGGAATTCTCTAATGGTTGGGCTTCTACGTTGATTGTCCAAACTGCCATTGCCATTGTTGATAACAACGCTTCTCAAATCCAACAACTCATGTGGATGCTTAACGAGCTCGGTTCACCCTATGGCGACATTGATCAAAAACTAGCTTTTTACTTTCTTCGAGCTATGTTTAGTCATGTCACGAACTCTGGTGAACGGTGCTACCAGACCTTGGCAATGGTGTCGGAGAAACGGTCTTGTTTCGCGTCGATGAGAAGAATGGTGTTGAAGTTTCAAGAGGTGAGTCCATGGATGACGTTTGGTCATGTTGCTTCAAATGGTGTTATCATGGAGGCTTTTGAAGGAGAAAAGAAGTTGCATATAATTGATATTAGCAACTCCTTTTGTACTCAATGGCCGACTTTCCTTGAAGCTCTAGCATCTCGGTCAGACGAAACTCCACACCTTAGGCTCACGACGCTAGTCGTAGCGAGATCGGATAAGAAGATGATGAGAGAAATTAGCAGAAGAATGGAGAAATTCGCGAGGCTTATGGGGGTTCCCTTCAAATTCAAAGCAATATATTACTCCGGCGATATTTCACAGCTAAATTTCACGGAGTTAGGGGTTAATGACGACGAAGCCCTTGCCATTAACTGCGTCGGCGCCTTCCGCTCCGTCACGCCCGTCGACAACCGCCGCGATTTTCTGATTTCGCTGTTCGGAGCTTTGCGGCCGAGGATAATCACTGTGGTGGAGGAGCAGGCAGATCTCGATAGCGACGGCGTTGACTTTGTCAAAGACGTTCAAGAATGTTTACGGTGGTTTAGGGTTTACTTTGATTCCTTGGACGGAAGTTTCCCTTCCACAAGTGATGAAAAGTTGATGCTCGAACGCGCCGCTGGACGCGCTATCGTGGACTTGCTTGCACGCGCGCCAGCGGAGTGTGTTGAGAGGCGCGAGACGGCTGCGCGTTGGGCTCGTCGTTTGCATGAGGGTGGTTTTAAACCGGTGTCGTTTAGTGAGGATGTAAACGACGACGTACGTGCGCTTTTAAGGAAGTATAAGGATGGGTGGACGGTGTTGGATGACGGCGAGGGCGCCGATGCCGGAATTTTCTTGGCTTGGAAGGGGCAGGCGGTGGTTTGGGCCGCCGCATGGACGCCTGAACCACTGGACGGAGAGAAGAGTCGCCAGAGTAGTTGTTCACATTGAAAAAGATATCTCTCTATTTGGTTTTTCTTCTCCGTTTTGTGATTTTGGCCCCCCCTTTTTTTTTCCATTTGTGATTTGAGATTTACTTTGTAATATTAAAATCTTTTAGTAATGTTATTAACAAAC

Coding sequence (CDS)

ATGGATACTTTGTTCAGGCTTGTCTCCAACCTTCAACCTTCTGATCAATCTTACAACTCAAGCACCAGCTCCAAGAATTCTGTCGATCTTCAAAATCATTGTTTCCTTAACCCACCACCACCTGAACAATGCTTCACCAGCTCATTCATGGTGGATCAACCACATTTCTCTGCCTCCTCTTCTTCCAACCATCGTCCTGATAAGGACCATGTTCATCAAGATCACGAGTATATAAGTACTATCAATTCGACTGATCGCTGGTTCGCCCCTTTAGACGTGAACTTGGAATTCTCTAATGGTTGGGCTTCTACGTTGATTGTCCAAACTGCCATTGCCATTGTTGATAACAACGCTTCTCAAATCCAACAACTCATGTGGATGCTTAACGAGCTCGGTTCACCCTATGGCGACATTGATCAAAAACTAGCTTTTTACTTTCTTCGAGCTATGTTTAGTCATGTCACGAACTCTGGTGAACGGTGCTACCAGACCTTGGCAATGGTGTCGGAGAAACGGTCTTGTTTCGCGTCGATGAGAAGAATGGTGTTGAAGTTTCAAGAGGTGAGTCCATGGATGACGTTTGGTCATGTTGCTTCAAATGGTGTTATCATGGAGGCTTTTGAAGGAGAAAAGAAGTTGCATATAATTGATATTAGCAACTCCTTTTGTACTCAATGGCCGACTTTCCTTGAAGCTCTAGCATCTCGGTCAGACGAAACTCCACACCTTAGGCTCACGACGCTAGTCGTAGCGAGATCGGATAAGAAGATGATGAGAGAAATTAGCAGAAGAATGGAGAAATTCGCGAGGCTTATGGGGGTTCCCTTCAAATTCAAAGCAATATATTACTCCGGCGATATTTCACAGCTAAATTTCACGGAGTTAGGGGTTAATGACGACGAAGCCCTTGCCATTAACTGCGTCGGCGCCTTCCGCTCCGTCACGCCCGTCGACAACCGCCGCGATTTTCTGATTTCGCTGTTCGGAGCTTTGCGGCCGAGGATAATCACTGTGGTGGAGGAGCAGGCAGATCTCGATAGCGACGGCGTTGACTTTGTCAAAGACGTTCAAGAATGTTTACGGTGGTTTAGGGTTTACTTTGATTCCTTGGACGGAAGTTTCCCTTCCACAAGTGATGAAAAGTTGATGCTCGAACGCGCCGCTGGACGCGCTATCGTGGACTTGCTTGCACGCGCGCCAGCGGAGTGTGTTGAGAGGCGCGAGACGGCTGCGCGTTGGGCTCGTCGTTTGCATGAGGGTGGTTTTAAACCGGTGTCGTTTAGTGAGGATGTAAACGACGACGTACGTGCGCTTTTAAGGAAGTATAAGGATGGGTGGACGGTGTTGGATGACGGCGAGGGCGCCGATGCCGGAATTTTCTTGGCTTGGAAGGGGCAGGCGGTGGTTTGGGCCGCCGCATGGACGCCTGAACCACTGGACGGAGAGAAGAGTCGCCAGAGTAGTTGTTCACATTGA

Protein sequence

MDTLFRLVSNLQPSDQSYNSSTSSKNSVDLQNHCFLNPPPPEQCFTSSFMVDQPHFSASSSSNHRPDKDHVHQDHEYISTINSTDRWFAPLDVNLEFSNGWASTLIVQTAIAIVDNNASQIQQLMWMLNELGSPYGDIDQKLAFYFLRAMFSHVTNSGERCYQTLAMVSEKRSCFASMRRMVLKFQEVSPWMTFGHVASNGVIMEAFEGEKKLHIIDISNSFCTQWPTFLEALASRSDETPHLRLTTLVVARSDKKMMREISRRMEKFARLMGVPFKFKAIYYSGDISQLNFTELGVNDDEALAINCVGAFRSVTPVDNRRDFLISLFGALRPRIITVVEEQADLDSDGVDFVKDVQECLRWFRVYFDSLDGSFPSTSDEKLMLERAAGRAIVDLLARAPAECVERRETAARWARRLHEGGFKPVSFSEDVNDDVRALLRKYKDGWTVLDDGEGADAGIFLAWKGQAVVWAAAWTPEPLDGEKSRQSSCSH

Homology

[Close]

BLAST of CmaCh02G005390 vs. ExPASy Swiss-Prot
Match: Q9SZF7 (Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 2.6e-126
Identity = 260/534 (48.69%), Postives = 344/534 (64.42%), Query Frame = 0


Query: 1   MDTLFRLVSNLQP-------SDQSYNSSTSSKNSVDLQNHCFLNPPP---PEQCFTSSFM 60
           MDTLFRLVS  Q        ++QS  S TS+  +   Q     N P     E+CF  +F 
Sbjct: 1   MDTLFRLVSLQQQQQSDSIITNQSSLSRTSTTTTGSPQTAYHYNFPQNDVVEECF--NFF 60

Query: 61  VDQPHFSASSS--SNHRPDKDHVH--------QDHEYISTINSTDRWFAPL--------- 120
           +D+   S+SSS  ++H  +  + +        Q H   S+  S+    A L         
Sbjct: 61  MDEEDLSSSSSHHNHHNHNNPNTYYSPFTTPTQYHPATSSTPSSTAAAAALASPYSSSGH 120

Query: 121 ------------DVNLEFSNG--WASTLIVQTAIAIVDNNASQIQQLMWMLNELGSPYGD 180
                         + +FS    WA +++++ A A  D + ++ QQ++W LNEL SPYGD
Sbjct: 121 HNDPSAFSIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGD 180

Query: 181 IDQKLAFYFLRAMFSHVTNSGERCYQTL--AMVSEKRSCFASMRRMVLKFQEVSPWMTFG 240
            +QKLA YFL+A+F+ +T SGERCY+T+  A  +EK   F S R+ VLKFQEVSPW TFG
Sbjct: 181 TEQKLASYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFG 240

Query: 241 HVASNGVIMEAFEGEKKLHIIDISNSFCTQWPTFLEALASRSDETPHLRLTTLVVAR--- 300
           HVA+NG I+EA +GE K+HI+DIS++FCTQWPT LEALA+RSD+TPHLRLTT+VVA    
Sbjct: 241 HVAANGAILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFV 300

Query: 301 ----SDKKMMREISRRMEKFARLMGVPFKFKAIYYSGDISQLNFTELGVNDDEALAINCV 360
               +  +MM+EI  RMEKFARLMGVPFKF  I++ GD+S+ +  EL V  DE LAINCV
Sbjct: 301 NDQTASHRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCV 360

Query: 361 GAFRSVTPVDNRRDFLISLFGALRPRIITVVEEQADL---DSDGVD--FVKDVQECLRWF 420
           GA   +    + RD +IS F  LRPRI+TVVEE+ADL   +  G D  F++   ECLRWF
Sbjct: 361 GAMHGIASRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWF 420

Query: 421 RVYFDSLDGSFPSTSDEKLMLERAAGRAIVDLLARAPAECVERRETAARWARRLHEGGFK 477
           RV F+S + SFP TS+E+LMLERAAGRAIVDL+A  P++  ERRETA +W+RR+   GF 
Sbjct: 421 RVCFESWEESFPRTSNERLMLERAAGRAIVDLVACEPSDSTERRETARKWSRRMRNSGFG 480

[Close]

BLAST of CmaCh02G005390 vs. ExPASy Swiss-Prot
Match: A2YN56 (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 1.2e-112
Identity = 209/412 (50.73%), Postives = 286/412 (69.42%), Query Frame = 0


Query: 101 WASTLIVQTAIAIVDNNASQIQQLMWMLNELGSPYGDIDQKLAFYFLRAMFSHVTNSGER 160
           WAS L+++ A ++   ++ ++QQLMWMLNEL SPYGD++QKLA YFL+ +F+ +T SG+R
Sbjct: 191 WASQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGQR 250

Query: 161 CYQTLAMVSEKRSCFASMRRMVLKFQEVSPWMTFGHVASNGVIMEAF--------EGEKK 220
             +TLA  S++ + F S RR  L+FQE+SPW +FGHVA+NG I+E+F           ++
Sbjct: 251 TLRTLAAASDRNTSFDSTRRTALRFQELSPWSSFGHVAANGAILESFLEVAAAASSETQR 310

Query: 221 LHIIDISNSFCTQWPTFLEALASRS-DETPHLRLTTLVVARSD------KKMMREISRRM 280
            HI+D+SN+FCTQWPT LEALA+RS DETPHL +TT+V A         +++MREI +RM
Sbjct: 311 FHILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPTAAVQRVMREIGQRM 370

Query: 281 EKFARLMGVPFKFKAIYYSGDISQLNFTELGVND---DEALAINCVGAFRSVTP-VDNRR 340
           EKFARLMGVPF+F+A+++SGD+++L+   L + +     ALA+NCV + R V P    RR
Sbjct: 371 EKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRARRR 430

Query: 341 DFLISLFGALRPRIITVVEEQADLDSDGVD--------------FVKDVQECLRWFRVYF 400
           D   +    L PR++TVVEE+ADL +   D              F+K   E LR+F  Y 
Sbjct: 431 DAFAASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAYM 490

Query: 401 DSLDGSFPSTSDEKLMLERAAGRAIVDLLARAPAECVERRETAARWARRLHEGGFKPVSF 460
           DSL+ SFP TS+E+L LER AGRAIVDL++   +E +ERRETAA WARR+   GF PV+F
Sbjct: 491 DSLEESFPKTSNERLALERGAGRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVAF 550

Query: 461 SEDVNDDVRALLRKYKDGWTVLD---DGEGADAGIFLAWKGQAVVWAAAWTP 477
           SEDV DDVR+LLR+Y++GW++ +   D   A AG+FLAWK Q +VWA+AW P
Sbjct: 551 SEDVADDVRSLLRRYREGWSMREAGTDDSAAGAGVFLAWKEQPLVWASAWRP 602

[Close]

BLAST of CmaCh02G005390 vs. ExPASy Swiss-Prot
Match: Q8H2X8 (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2)

HSP 1 Score: 407.1 bits (1045), Expect = 2.7e-112
Identity = 209/412 (50.73%), Postives = 285/412 (69.17%), Query Frame = 0


Query: 101 WASTLIVQTAIAIVDNNASQIQQLMWMLNELGSPYGDIDQKLAFYFLRAMFSHVTNSGER 160
           WAS L+++ A ++   ++ ++QQLMWMLNEL SPYGD++QKLA YFL+ +F+ +T SG R
Sbjct: 191 WASQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGPR 250

Query: 161 CYQTLAMVSEKRSCFASMRRMVLKFQEVSPWMTFGHVASNGVIMEAF--------EGEKK 220
             +TLA  S++ + F S RR  L+FQE+SPW +FGHVA+NG I+E+F           ++
Sbjct: 251 TLRTLAAASDRNTSFDSTRRTALRFQELSPWSSFGHVAANGAILESFLEVAAAASSETQR 310

Query: 221 LHIIDISNSFCTQWPTFLEALASRS-DETPHLRLTTLVVARSD------KKMMREISRRM 280
            HI+D+SN+FCTQWPT LEALA+RS DETPHL +TT+V A         +++MREI +RM
Sbjct: 311 FHILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPTAAVQRVMREIGQRM 370

Query: 281 EKFARLMGVPFKFKAIYYSGDISQLNFTELGVND---DEALAINCVGAFRSVTP-VDNRR 340
           EKFARLMGVPF+F+A+++SGD+++L+   L + +     ALA+NCV + R V P    RR
Sbjct: 371 EKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRARRR 430

Query: 341 DFLISLFGALRPRIITVVEEQADLDSDGVD--------------FVKDVQECLRWFRVYF 400
           D   +    L PR++TVVEE+ADL +   D              F+K   E LR+F  Y 
Sbjct: 431 DAFAASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAYM 490

Query: 401 DSLDGSFPSTSDEKLMLERAAGRAIVDLLARAPAECVERRETAARWARRLHEGGFKPVSF 460
           DSL+ SFP TS+E+L LER AGRAIVDL++   +E +ERRETAA WARR+   GF PV+F
Sbjct: 491 DSLEESFPKTSNERLALERGAGRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVAF 550

Query: 461 SEDVNDDVRALLRKYKDGWTVLD---DGEGADAGIFLAWKGQAVVWAAAWTP 477
           SEDV DDVR+LLR+Y++GW++ +   D   A AG+FLAWK Q +VWA+AW P
Sbjct: 551 SEDVADDVRSLLRRYREGWSMREAGTDDSAAGAGVFLAWKEQPLVWASAWRP 602

[Close]

BLAST of CmaCh02G005390 vs. ExPASy Swiss-Prot
Match: Q75I13 (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 8.8e-111
Identity = 228/506 (45.06%), Postives = 308/506 (60.87%), Query Frame = 0


Query: 15  DQSYNSSTSSKNSVDLQNHCFLNPPPPEQCFTSSFMVDQPHFSASSSSNHRPDKDHVHQD 74
           D+ ++SS+SS+            P PP    T+S       F A+  S  + D   +  D
Sbjct: 104 DEDFSSSSSSRQFHSGTGAPSSAPVPPPPSATTSSAGGHGLFEAADFSFPQVD---ISLD 163

Query: 75  HEYISTINSTDRWFAPLDVNLEFSNGWASTLIVQTAIAIVDNNASQIQQLMWMLNELGSP 134
                 + S+    A        S  WA+ L+++ A A+   ++ ++QQLMWMLNEL SP
Sbjct: 164 FGGSPAVPSSSGAGAGAGAAPSSSGRWAAQLLMECARAVAGRDSQRVQQLMWMLNELASP 223

Query: 135 YGDIDQKLAFYFLRAMFSHVTNSGERCYQTLAMVSEKRSCFASMRRMVLKFQEVSPWMTF 194
           YGD+DQKLA YFL+ +F+ +T SG R  +TLA  S++ + F S RR  LKFQE+SPW  F
Sbjct: 224 YGDVDQKLASYFLQGLFARLTTSGPRTLRTLATASDRNASFDSTRRTALKFQELSPWTPF 283

Query: 195 GHVASNGVIMEAF-------------------EGEKKLHIIDISNSFCTQWPTFLEALAS 254
           GHVA+NG I+E+F                       +LHI+D+SN+FCTQWPT LEALA+
Sbjct: 284 GHVAANGAILESFLEAAAAGAAASSSSSSSSSTPPTRLHILDLSNTFCTQWPTLLEALAT 343

Query: 255 R-SDETPHLRLTTLV----VARSDKKMMREISRRMEKFARLMGVPFKFKAIYYSGDISQL 314
           R SD+TPHL +TT+V     + + +++MREI +R+EKFARLMGVPF F+A+++SGD++ L
Sbjct: 344 RSSDDTPHLSITTVVPTAAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHSGDLADL 403

Query: 315 NFTELGVND---DEALAINCVGAFRSVTPVDNRRDFLISLFGALRPRIITVVEEQADLDS 374
           +   L + +     ALA+NCV A R V      RD  ++    L PR++TVVEE+ADL +
Sbjct: 404 DLAALDLREGGATAALAVNCVNALRGVA---RGRDAFVASLRRLEPRVVTVVEEEADLAA 463

Query: 375 DGVD----------FVKDVQECLRWFRVYFDSLDGSFPSTSDEKLMLERAAGRAIVDLLA 434
              D          FVK   E LR+F  Y DSL+ SFP TS+E+L LERA GRAIVDL++
Sbjct: 464 PEADASSEADTDAAFVKVFGEGLRFFSAYMDSLEESFPKTSNERLSLERAVGRAIVDLVS 523

Query: 435 RAPAECVERRETAARWARRLHEGGFKPVSFSEDVNDDVRALLRKYKDGWTVLDDGEGAD- 477
              ++  ERRETAA WARR+   GF P +FSEDV DDVR+LLR+YK+GW++ D G   D 
Sbjct: 524 CPASQSAERRETAASWARRMRSAGFSPAAFSEDVADDVRSLLRRYKEGWSMRDAGGATDD 583

[Close]

BLAST of CmaCh02G005390 vs. ExPASy Swiss-Prot
Match: A2XIA8 (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 2.0e-110
Identity = 227/506 (44.86%), Postives = 308/506 (60.87%), Query Frame = 0


Query: 15  DQSYNSSTSSKNSVDLQNHCFLNPPPPEQCFTSSFMVDQPHFSASSSSNHRPDKDHVHQD 74
           D+ ++SS+SS+            P PP    T+S       F A+  S  + D   +  D
Sbjct: 104 DEDFSSSSSSRQFHSGTGAPSSAPVPPPPSATTSSAGGHGLFEAADFSFPQVD---ISLD 163

Query: 75  HEYISTINSTDRWFAPLDVNLEFSNGWASTLIVQTAIAIVDNNASQIQQLMWMLNELGSP 134
                 + S+    A        S  WA+ L+++ A A+   ++ ++QQLMWMLNEL SP
Sbjct: 164 FGGSPAVPSSSGAGAGAGAAPSSSGRWAAQLLMECARAVAGRDSQRVQQLMWMLNELASP 223

Query: 135 YGDIDQKLAFYFLRAMFSHVTNSGERCYQTLAMVSEKRSCFASMRRMVLKFQEVSPWMTF 194
           YGD+DQKLA YFL+ +F+ +T SG R  +TLA  S++ + F S RR  LKFQE+SPW  F
Sbjct: 224 YGDVDQKLASYFLQGLFARLTTSGPRTLRTLATASDRNASFDSTRRTALKFQELSPWTPF 283

Query: 195 GHVASNGVIMEAF-------------------EGEKKLHIIDISNSFCTQWPTFLEALAS 254
           GHVA+NG I+E+F                       +LHI+D+SN+FCTQWPT LEALA+
Sbjct: 284 GHVAANGAILESFLEAAAAGAAAASSSSSSSSTPPTRLHILDLSNTFCTQWPTLLEALAT 343

Query: 255 R-SDETPHLRLTTLV----VARSDKKMMREISRRMEKFARLMGVPFKFKAIYYSGDISQL 314
           R SD+TPHL +TT+V     + + +++MREI +R+EKFARLMGVPF F+A++++GD++ L
Sbjct: 344 RSSDDTPHLSITTVVPTAAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHAGDLADL 403

Query: 315 NFTELGVND---DEALAINCVGAFRSVTPVDNRRDFLISLFGALRPRIITVVEEQADLDS 374
           +   L + +     ALA+NCV A R V      RD  ++    L PR++TVVEE+ADL +
Sbjct: 404 DLAALDLREGGATAALAVNCVNALRGVA---RGRDAFVASLRRLEPRVVTVVEEEADLAA 463

Query: 375 DGVD----------FVKDVQECLRWFRVYFDSLDGSFPSTSDEKLMLERAAGRAIVDLLA 434
              D          FVK   E LR+F  Y DSL+ SFP TS+E+L LERA GRAIVDL++
Sbjct: 464 PEADASSEADTDAAFVKVFGEGLRFFSAYMDSLEESFPKTSNERLSLERAVGRAIVDLVS 523

Query: 435 RAPAECVERRETAARWARRLHEGGFKPVSFSEDVNDDVRALLRKYKDGWTVLDDGEGAD- 477
              ++  ERRETAA WARR+   GF P +FSEDV DDVR+LLR+YK+GW++ D G   D 
Sbjct: 524 CPASQSAERRETAASWARRMRSAGFSPAAFSEDVADDVRSLLRRYKEGWSMRDAGGATDD 583

[Close]

BLAST of CmaCh02G005390 vs. TAIR 10
Match: AT4G37650.1 (GRAS family transcription factor )

HSP 1 Score: 453.8 bits (1166), Expect = 1.8e-127
Identity = 260/534 (48.69%), Postives = 344/534 (64.42%), Query Frame = 0


Query: 1   MDTLFRLVSNLQP-------SDQSYNSSTSSKNSVDLQNHCFLNPPP---PEQCFTSSFM 60
           MDTLFRLVS  Q        ++QS  S TS+  +   Q     N P     E+CF  +F 
Sbjct: 1   MDTLFRLVSLQQQQQSDSIITNQSSLSRTSTTTTGSPQTAYHYNFPQNDVVEECF--NFF 60

Query: 61  VDQPHFSASSS--SNHRPDKDHVH--------QDHEYISTINSTDRWFAPL--------- 120
           +D+   S+SSS  ++H  +  + +        Q H   S+  S+    A L         
Sbjct: 61  MDEEDLSSSSSHHNHHNHNNPNTYYSPFTTPTQYHPATSSTPSSTAAAAALASPYSSSGH 120

Query: 121 ------------DVNLEFSNG--WASTLIVQTAIAIVDNNASQIQQLMWMLNELGSPYGD 180
                         + +FS    WA +++++ A A  D + ++ QQ++W LNEL SPYGD
Sbjct: 121 HNDPSAFSIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGD 180

Query: 181 IDQKLAFYFLRAMFSHVTNSGERCYQTL--AMVSEKRSCFASMRRMVLKFQEVSPWMTFG 240
            +QKLA YFL+A+F+ +T SGERCY+T+  A  +EK   F S R+ VLKFQEVSPW TFG
Sbjct: 181 TEQKLASYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFG 240

Query: 241 HVASNGVIMEAFEGEKKLHIIDISNSFCTQWPTFLEALASRSDETPHLRLTTLVVAR--- 300
           HVA+NG I+EA +GE K+HI+DIS++FCTQWPT LEALA+RSD+TPHLRLTT+VVA    
Sbjct: 241 HVAANGAILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFV 300

Query: 301 ----SDKKMMREISRRMEKFARLMGVPFKFKAIYYSGDISQLNFTELGVNDDEALAINCV 360
               +  +MM+EI  RMEKFARLMGVPFKF  I++ GD+S+ +  EL V  DE LAINCV
Sbjct: 301 NDQTASHRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCV 360

Query: 361 GAFRSVTPVDNRRDFLISLFGALRPRIITVVEEQADL---DSDGVD--FVKDVQECLRWF 420
           GA   +    + RD +IS F  LRPRI+TVVEE+ADL   +  G D  F++   ECLRWF
Sbjct: 361 GAMHGIASRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWF 420

Query: 421 RVYFDSLDGSFPSTSDEKLMLERAAGRAIVDLLARAPAECVERRETAARWARRLHEGGFK 477
           RV F+S + SFP TS+E+LMLERAAGRAIVDL+A  P++  ERRETA +W+RR+   GF 
Sbjct: 421 RVCFESWEESFPRTSNERLMLERAAGRAIVDLVACEPSDSTERRETARKWSRRMRNSGFG 480

[Close]

BLAST of CmaCh02G005390 vs. TAIR 10
Match: AT3G49950.1 (GRAS family transcription factor )

HSP 1 Score: 182.2 bits (461), Expect = 1.0e-45
Identity = 119/389 (30.59%), Postives = 196/389 (50.39%), Query Frame = 0


Query: 105 LIVQTAIAIVDNNASQIQQLMWMLNELGSPYGDIDQKLAFYFLRAMFSHVTNSGERCYQT 164
           L++  A AI  N+A+   Q++W+LN +  P GD  Q+L   FLRA+ S   +       T
Sbjct: 30  LLLHCATAIDSNDAALTHQILWVLNNIAPPDGDSTQRLTSAFLRALLSRAVSKTPTLSST 89

Query: 165 LAMVSEKRSCFASMRRMVLKFQEVSPWMTFGHVASNGVIMEAFEGEKKLHIIDISNSFCT 224
           ++ + +           +  F +++PW  FG +A+N  I+ A EG   +HI+D+S + C 
Sbjct: 90  ISFLPQADELHRFSVVELAAFVDLTPWHRFGFIAANAAILTAVEGYSTVHIVDLSLTHCM 149

Query: 225 QWPTFLEALASRSDETPHLRLTTLVVARSD------KKMMREISRRMEKFARLMGVPFKF 284
           Q PT ++A+ASR ++ P L L   VV+ SD           E+  ++  FA    +  +F
Sbjct: 150 QIPTLIDAMASRLNKPPPL-LKLTVVSSSDHFPPFINISYEELGSKLVNFATTRNITMEF 209

Query: 285 KAI--YYSGDISQLNFTELGV---NDDEALAINCVGAFRSV--TPVDNRRDFLISLF--- 344
             +   YS   S L   +L +   + +EAL +NC    R +   P+ +    L ++F   
Sbjct: 210 TIVPSTYSDGFSSL-LQQLRIYPSSFNEALVVNCHMMLRYIPEEPLTSSSSSLRTVFLKQ 269

Query: 345 -GALRPRIITVVEEQADLDSDGVDFVKDVQECLRWFRVYFDSLDGSFPSTSDEKLMLERA 404
             +L PRI+T++EE  DL S+  + V  ++    +F + FD+ D      S+++   E  
Sbjct: 270 LRSLNPRIVTLIEEDVDLTSE--NLVNRLKSAFNYFWIPFDTTD---TFMSEQRRWYEAE 329

Query: 405 AGRAIVDLLARAPAECVERRETAARWARRLHEGGFKPVSFSEDVNDDVRALLRKYKDGWT 464
               I +++A+  AE VER ET  RW  R+ E  F  V   ED   DV+A+L ++  GW 
Sbjct: 330 ISWKIENVVAKEGAERVERTETKRRWIERMREAEFGGVRVKEDAVADVKAMLEEHAVGWG 389

Query: 465 VLDDGEGADAGIFLAWKGQAVVWAAAWTP 477
           +  + +  D  + L WKG +VV+A  W P
Sbjct: 390 MKKEDD--DESLVLTWKGHSVVFATVWVP 409

[Close]

BLAST of CmaCh02G005390 vs. TAIR 10
Match: AT2G04890.1 (SCARECROW-like 21 )

HSP 1 Score: 180.6 bits (457), Expect = 3.0e-45
Identity = 109/382 (28.53%), Postives = 193/382 (50.52%), Query Frame = 0


Query: 98  SNGWASTLIVQTAIAIVDNNASQIQQLMWMLNELGSPYGDIDQKLAFYFLRAMFSHVTNS 157
           S G    ++V  A A+ +NN    +  M  L  + S  G+  Q+L  Y L  + + +  S
Sbjct: 46  SRGDLKLVLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAAS 105

Query: 158 GERCYQTLAMVSEKRSCFASMRRMVLKFQEVSPWMTFGHVASNGVIMEAFEGEKKLHIID 217
           G   Y++L     +   F S    V    EV P+  FG++++NG I EA + E+++HIID
Sbjct: 106 GSSIYKSLQSREPESYEFLS---YVYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIID 165

Query: 218 ISNSFCTQWPTFLEALASRSDETPHLRLTTLVVARSDKKMMREISRRMEKFARLMGVPFK 277
                 +QW   ++A A+R    P++R+T +     D  ++  + +R+EK A+   VPF+
Sbjct: 166 FQIGQGSQWIALIQAFAARPGGAPNIRITGV----GDGSVLVTVKKRLEKLAKKFDVPFR 225

Query: 278 FKAIYYSGDISQLNFTELGVNDDEALAINCVGAFRSV----TPVDNRRDFLISLFGALRP 337
           F A+  S    ++    L V D EAL +N       +      ++N RD L+ +  +L P
Sbjct: 226 FNAV--SRPSCEVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSP 285

Query: 338 RIITVVEEQADLDSDGVDFVKDVQECLRWFRVYFDSLDGSFPSTSDEKLMLER-AAGRAI 397
           +++T+VE++ + ++    F+    E L ++   F+S+D   P    E++ +E+    R +
Sbjct: 286 KVVTLVEQECNTNTS--PFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDV 345

Query: 398 VDLLARAPAECVERRETAARWARRLHEGGFKPVSFSEDVNDDVRALLRKYKDGWTVLDDG 457
           V+++A   AE +ER E   +W  R    GF+P   S  ++  +RALLR Y +G+ +    
Sbjct: 346 VNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYAI---- 405

Query: 458 EGADAGIFLAWKGQAVVWAAAW 475
           E  D  ++L W  + +V + AW
Sbjct: 406 EERDGALYLGWMDRILVSSCAW 412

[Close]

BLAST of CmaCh02G005390 vs. TAIR 10
Match: AT5G48150.1 (GRAS family transcription factor )

HSP 1 Score: 175.3 bits (443), Expect = 1.2e-43
Identity = 111/395 (28.10%), Postives = 195/395 (49.37%), Query Frame = 0


Query: 99  NGWASTL-----------IVQTAIAIVDNNASQIQQLMWMLNELGSPYGDIDQKLAFYFL 158
           NGW STL           +V  A A+ +N+      +M  L ++ S  G+  Q+L  Y L
Sbjct: 105 NGWRSTLEAISRRDLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLL 164

Query: 159 RAMFSHVTNSGERCYQTLAMVSEKRSCFASMRRMVLKFQEVSPWMTFGHVASNGVIMEAF 218
             + + + +SG   Y+ L    E  S        +L   EV P+  FG++++NG I EA 
Sbjct: 165 EGLVAQLASSGSSIYKALNRCPEPASTELLSYMHIL--YEVCPYFKFGYMSANGAIAEAM 224

Query: 219 EGEKKLHIIDISNSFCTQWPTFLEALASRSDETPHLRLT---TLVVARSDKKMMREISRR 278
           + E ++HIID      +QW T ++A A+R    P +R+T    +  A +    +  +  R
Sbjct: 225 KEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYARGGGLSIVGNR 284

Query: 279 MEKFARLMGVPFKFKAIYYSGDISQLNFTELGVNDDEALAINCVGAFRSV----TPVDNR 338
           + K A+   VPF+F ++  S  +S++    LGV   EALA+N       +       +N 
Sbjct: 285 LAKLAKQFNVPFEFNSV--SVSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENH 344

Query: 339 RDFLISLFGALRPRIITVVEEQADLDSDGVDFVKDVQECLRWFRVYFDSLDGSFPSTSDE 398
           RD L+ +  +L P+++T+VE++++ ++    F     E + ++   F+S+D + P    +
Sbjct: 345 RDRLLRMVKSLSPKVVTLVEQESNTNT--AAFFPRFMETMNYYAAMFESIDVTLPRDHKQ 404

Query: 399 KLMLER-AAGRAIVDLLARAPAECVERRETAARWARRLHEGGFKPVSFSEDVNDDVRALL 458
           ++ +E+    R +V+++A   A+ VER E   +W  R    GF P   S  VN  +++LL
Sbjct: 405 RINVEQHCLARDVVNIIACEGADRVERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSLL 464

Query: 459 RKYKDGWTVLDDGEGADAGIFLAWKGQAVVWAAAW 475
           R Y D + +    E  D  ++L W  + +V + AW
Sbjct: 465 RNYSDKYRL----EERDGALYLGWMHRDLVASCAW 489

[Close]

BLAST of CmaCh02G005390 vs. TAIR 10
Match: AT5G48150.2 (GRAS family transcription factor )

HSP 1 Score: 175.3 bits (443), Expect = 1.2e-43
Identity = 111/395 (28.10%), Postives = 195/395 (49.37%), Query Frame = 0


Query: 99  NGWASTL-----------IVQTAIAIVDNNASQIQQLMWMLNELGSPYGDIDQKLAFYFL 158
           NGW STL           +V  A A+ +N+      +M  L ++ S  G+  Q+L  Y L
Sbjct: 105 NGWRSTLEAISRRDLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLL 164

Query: 159 RAMFSHVTNSGERCYQTLAMVSEKRSCFASMRRMVLKFQEVSPWMTFGHVASNGVIMEAF 218
             + + + +SG   Y+ L    E  S        +L   EV P+  FG++++NG I EA 
Sbjct: 165 EGLVAQLASSGSSIYKALNRCPEPASTELLSYMHIL--YEVCPYFKFGYMSANGAIAEAM 224

Query: 219 EGEKKLHIIDISNSFCTQWPTFLEALASRSDETPHLRLT---TLVVARSDKKMMREISRR 278
           + E ++HIID      +QW T ++A A+R    P +R+T    +  A +    +  +  R
Sbjct: 225 KEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYARGGGLSIVGNR 284

Query: 279 MEKFARLMGVPFKFKAIYYSGDISQLNFTELGVNDDEALAINCVGAFRSV----TPVDNR 338
           + K A+   VPF+F ++  S  +S++    LGV   EALA+N       +       +N 
Sbjct: 285 LAKLAKQFNVPFEFNSV--SVSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENH 344

Query: 339 RDFLISLFGALRPRIITVVEEQADLDSDGVDFVKDVQECLRWFRVYFDSLDGSFPSTSDE 398
           RD L+ +  +L P+++T+VE++++ ++    F     E + ++   F+S+D + P    +
Sbjct: 345 RDRLLRMVKSLSPKVVTLVEQESNTNT--AAFFPRFMETMNYYAAMFESIDVTLPRDHKQ 404

Query: 399 KLMLER-AAGRAIVDLLARAPAECVERRETAARWARRLHEGGFKPVSFSEDVNDDVRALL 458
           ++ +E+    R +V+++A   A+ VER E   +W  R    GF P   S  VN  +++LL
Sbjct: 405 RINVEQHCLARDVVNIIACEGADRVERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSLL 464

Query: 459 RKYKDGWTVLDDGEGADAGIFLAWKGQAVVWAAAW 475
           R Y D + +    E  D  ++L W  + +V + AW
Sbjct: 465 RNYSDKYRL----EERDGALYLGWMHRDLVASCAW 489

The following BLAST results are available for this feature:

BLAST of CmaCh02G005390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZF7	2.6e-126	48.69	Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1	[more]
A2YN56	1.2e-112	50.73	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1	[more]
Q8H2X8	2.7e-112	50.73	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2	[more]
Q75I13	8.8e-111	45.06	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1	[more]
A2XIA8	2.0e-110	44.86	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1	[more]

BLAST of CmaCh02G005390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37650.1	1.8e-127	48.69	GRAS family transcription factor	[more]
AT3G49950.1	1.0e-45	30.59	GRAS family transcription factor	[more]
AT2G04890.1	3.0e-45	28.53	SCARECROW-like 21	[more]
AT5G48150.1	1.2e-43	28.10	GRAS family transcription factor	[more]
AT5G48150.2	1.2e-43	28.10	GRAS family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 104..475 e-value: 5.2E-95 score: 318.5
IPR005202	Transcription factor GRAS	PANTHER	PTHR31636	OSJNBA0084A10.13 PROTEIN-RELATED	coord: 1..475
IPR005202	Transcription factor GRAS	PROSITE	PS50985	GRAS	coord: 93..475 score: 65.396263
IPR030019	Protein short-root	PANTHER	PTHR31636:SF9	PROTEIN SHORT-ROOT	coord: 1..475

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G005390.1	CmaCh02G005390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008356	asymmetric cell division
biological_process	GO:0055072	iron ion homeostasis
biological_process	GO:0048366	leaf development
biological_process	GO:0045930	negative regulation of mitotic cell cycle
biological_process	GO:0009956	radial pattern formation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding