CmaCh02G005340 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G005340
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionE3 ubiquitin-protein ligase RNF126-like
LocationCma_Chr02: 2944851 .. 2945522 (+)
RNA-Seq ExpressionCmaCh02G005340
SyntenyCmaCh02G005340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTAACCTTCGGCGACTCTCTGTCCTTCCAATGTTCCTTCCGCACCAATACCACCGCCACCGTGACTTCCCACGAGCAACCCTTGCAGCTCGTGGAACTTCGACTCGGACATTCGAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACTCCAATAGGCGATGCTCTGTTTCCTTTTTTTCTGCGCGACCTGCTCCACCCACCCTTCCTCTCCAAATCCCACGTTCTTCGGTTTATGTCTTCCTTCAGCATCCCCATTGCCGCCTGCAATATCATCTTTACGGAGATCTCCTCCTTTGCGCTCCACTTGGCCGCCGGCAACGTCCATCGTAACTTACACATCGTCGTGGATGTGAATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTGAAGAATACTCTCCGCCTTCGATGAACGGGGTGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGACTGCAGTGTCTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAACAATTCATGTCCTCTCTGTAGAACCCAATTAGAACAATAA

mRNA sequence

ATGTCTTTAACCTTCGGCGACTCTCTGTCCTTCCAATGTTCCTTCCGCACCAATACCACCGCCACCGTGACTTCCCACGAGCAACCCTTGCAGCTCGTGGAACTTCGACTCGGACATTCGAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACTCCAATAGGCGATGCTCTGTTTCCTTTTTTTCTGCGCGACCTGCTCCACCCACCCTTCCTCTCCAAATCCCACGTTCTTCGGTTTATGTCTTCCTTCAGCATCCCCATTGCCGCCTGCAATATCATCTTTACGGAGATCTCCTCCTTTGCGCTCCACTTGGCCGCCGGCAACGTCCATCGTAACTTACACATCGTCGTGGATGTGAATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTGAAGAATACTCTCCGCCTTCGATGAACGGGGTGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGACTGCAGTGTCTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAACAATTCATGTCCTCTCTGTAGAACCCAATTAGAACAATAA

Coding sequence (CDS)

ATGTCTTTAACCTTCGGCGACTCTCTGTCCTTCCAATGTTCCTTCCGCACCAATACCACCGCCACCGTGACTTCCCACGAGCAACCCTTGCAGCTCGTGGAACTTCGACTCGGACATTCGAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACTCCAATAGGCGATGCTCTGTTTCCTTTTTTTCTGCGCGACCTGCTCCACCCACCCTTCCTCTCCAAATCCCACGTTCTTCGGTTTATGTCTTCCTTCAGCATCCCCATTGCCGCCTGCAATATCATCTTTACGGAGATCTCCTCCTTTGCGCTCCACTTGGCCGCCGGCAACGTCCATCGTAACTTACACATCGTCGTGGATGTGAATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTGAAGAATACTCTCCGCCTTCGATGAACGGGGTGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGACTGCAGTGTCTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAACAATTCATGTCCTCTCTGTAGAACCCAATTAGAACAATAA

Protein sequence

MSLTFGDSLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGDALFPFFLRDLLHPPFLSKSHVLRFMSSFSIPIAACNIIFTEISSFALHLAAGNVHRNLHIVVDVNVIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQLEQ
Homology
BLAST of CmaCh02G005340 vs. ExPASy Swiss-Prot
Match: Q6AVN2 (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.8e-10
Identity = 32/80 (40.00%), Postives = 46/80 (57.50%), Query Frame = 0

Query: 145 SPPSMNGVPAS---AIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHK 204
           S PS NG P +   A+E L   K       EE   CSVC + L+   +  ++PC H +H 
Sbjct: 170 SDPSRNGTPPAKKEAVEALPTVKI------EEVVSCSVCLDDLEVGSQAKQMPCEHKFHS 229

Query: 205 CCILKWLQMNNSCPLCRTQL 222
            CIL WL++++SCP+CR +L
Sbjct: 230 SCILPWLELHSSCPVCRFEL 243

BLAST of CmaCh02G005340 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.9e-10
Identity = 30/81 (37.04%), Postives = 45/81 (55.56%), Query Frame = 0

Query: 142 EEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHK 201
           E Y     N  P    E L R K      ++ + +CSVC    +G+ E++++ CGH++HK
Sbjct: 74  ESYLEEFRNRTPTLRFESLCRCK------KQADNECSVCLSKFQGDSEINKLKCGHLFHK 133

Query: 202 CCILKWLQ-MNNSCPLCRTQL 222
            C+ KW+   N +CPLCRT L
Sbjct: 134 TCLEKWIDYWNITCPLCRTPL 148

BLAST of CmaCh02G005340 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09
Identity = 30/78 (38.46%), Postives = 43/78 (55.13%), Query Frame = 0

Query: 147 PSMNGVP---ASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCC 206
           P+  G P    SAIE L            E   C+VC +  +   E  ++PC H+YHK C
Sbjct: 191 PNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDC 250

Query: 207 ILKWLQMNNSCPLCRTQL 222
           +L WL+++NSCP+CR +L
Sbjct: 251 LLPWLELHNSCPVCRHEL 268

BLAST of CmaCh02G005340 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09
Identity = 29/78 (37.18%), Postives = 46/78 (58.97%), Query Frame = 0

Query: 147 PSMNGVP---ASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCC 206
           P+  G P    SAI+ L   K      + E   C+VC +  +   +V ++PC HV+H+ C
Sbjct: 183 PNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDC 242

Query: 207 ILKWLQMNNSCPLCRTQL 222
           +L WL+++NSCP+CR +L
Sbjct: 243 LLPWLELHNSCPVCRFEL 260

BLAST of CmaCh02G005340 vs. ExPASy Swiss-Prot
Match: E9QAU8 (E3 ubiquitin-protein ligase RNF165 OS=Mus musculus OX=10090 GN=Rnf165 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.4e-09
Identity = 25/64 (39.06%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 163 QKFDGLREEEEEGD----CSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMNNSCPLCR 222
           Q   G ++E EE D    C++C   L+  E+V R+PC H++H+ C+ +WL M+  CP+CR
Sbjct: 277 QDSKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICR 336

BLAST of CmaCh02G005340 vs. TAIR 10
Match: AT1G45180.1 (RING/U-box superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-11
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 0

Query: 108 ALHLAAGNVH---RNLHIVVDVNVIEMIWVDLDPFLIEEYSPPSMNGVPASAI-ERLQRQ 167
           ++ L A ++H   R++ + VD     M + +L    +EE       G+    I  RL++Q
Sbjct: 524 SIMLGAADIHDRYRDMRLDVD----NMTYEEL--LSLEERIGDVCTGLNEETISNRLKQQ 583

Query: 168 KF-DGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRT 220
           K+    R  +E   C VC E  K EEE+ R+ CGH +H  CI +WL+  N CP+C+T
Sbjct: 584 KYKSSTRSSQEVEPCCVCQEEYKEEEEIGRLECGHDFHSQCIKEWLKQKNLCPICKT 634

BLAST of CmaCh02G005340 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-11
Identity = 30/81 (37.04%), Postives = 45/81 (55.56%), Query Frame = 0

Query: 142 EEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHK 201
           E Y     N  P    E L R K      ++ + +CSVC    +G+ E++++ CGH++HK
Sbjct: 74  ESYLEEFRNRTPTLRFESLCRCK------KQADNECSVCLSKFQGDSEINKLKCGHLFHK 133

Query: 202 CCILKWLQ-MNNSCPLCRTQL 222
            C+ KW+   N +CPLCRT L
Sbjct: 134 TCLEKWIDYWNITCPLCRTPL 148

BLAST of CmaCh02G005340 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-11
Identity = 30/81 (37.04%), Postives = 45/81 (55.56%), Query Frame = 0

Query: 142 EEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHK 201
           E Y     N  P    E L R K      ++ + +CSVC    +G+ E++++ CGH++HK
Sbjct: 74  ESYLEEFRNRTPTLRFESLCRCK------KQADNECSVCLSKFQGDSEINKLKCGHLFHK 133

Query: 202 CCILKWLQ-MNNSCPLCRTQL 222
            C+ KW+   N +CPLCRT L
Sbjct: 134 TCLEKWIDYWNITCPLCRTPL 148

BLAST of CmaCh02G005340 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-10
Identity = 29/78 (37.18%), Postives = 46/78 (58.97%), Query Frame = 0

Query: 147 PSMNGVP---ASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCC 206
           P+  G P    SAI+ L   K      + E   C+VC +  +   +V ++PC HV+H+ C
Sbjct: 183 PNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDC 242

Query: 207 ILKWLQMNNSCPLCRTQL 222
           +L WL+++NSCP+CR +L
Sbjct: 243 LLPWLELHNSCPVCRFEL 260

BLAST of CmaCh02G005340 vs. TAIR 10
Match: AT4G05350.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.4e-10
Identity = 27/66 (40.91%), Postives = 44/66 (66.67%), Query Frame = 0

Query: 159 RLQRQKFDGLREEEEEGDCSVCCEALKG---EEEVSRIPCGHVYHKCCILKWLQMNNSCP 218
           R++ ++F  L+ E E   CS+C E+L       +V+R+ C HV+H  C+L+WL+  N+CP
Sbjct: 141 RMKAEEFKSLKMETE--PCSICLESLVSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCP 200

Query: 219 LCRTQL 222
           LCRT++
Sbjct: 201 LCRTEI 204

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q6AVN26.8e-1040.00E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI... [more]
Q9SI098.9e-1037.04Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X... [more]
P0CH301.5e-0938.46E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV... [more]
Q8LPN71.5e-0937.18E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19... [more]
E9QAU83.4e-0939.06E3 ubiquitin-protein ligase RNF165 OS=Mus musculus OX=10090 GN=Rnf165 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
AT1G45180.12.8e-1134.19RING/U-box superfamily protein [more]
AT2G04240.16.3e-1137.04RING/U-box superfamily protein [more]
AT2G04240.26.3e-1137.04RING/U-box superfamily protein [more]
AT3G19950.11.1e-1037.18RING/U-box superfamily protein [more]
AT4G05350.12.4e-1040.91RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 177..217
e-value: 5.8E-6
score: 35.8
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 176..218
e-value: 7.7E-12
score: 45.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 177..218
score: 12.931868
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 152..223
e-value: 4.2E-20
score: 72.8
NoneNo IPR availablePANTHERPTHR45931SI:CH211-59O9.10coord: 79..222
NoneNo IPR availablePANTHERPTHR45931:SF9E3 UBIQUITIN-PROTEIN LIGASE RNF12-B-LIKEcoord: 79..222
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 164..221

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G005340.1CmaCh02G005340.1mRNA