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CmaCh02G005340 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTTTAACCTTCGGCGACTCTCTGTCCTTCCAATGTTCCTTCCGCACCAATACCACCGCCACCGTGACTTCCCACGAGCAACCCTTGCAGCTCGTGGAACTTCGACTCGGACATTCGAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACTCCAATAGGCGATGCTCTGTTTCCTTTTTTTCTGCGCGACCTGCTCCACCCACCCTTCCTCTCCAAATCCCACGTTCTTCGGTTTATGTCTTCCTTCAGCATCCCCATTGCCGCCTGCAATATCATCTTTACGGAGATCTCCTCCTTTGCGCTCCACTTGGCCGCCGGCAACGTCCATCGTAACTTACACATCGTCGTGGATGTGAATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTGAAGAATACTCTCCGCCTTCGATGAACGGGGTGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGACTGCAGTGTCTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAACAATTCATGTCCTCTCTGTAGAACCCAATTAGAACAATAA ATGTCTTTAACCTTCGGCGACTCTCTGTCCTTCCAATGTTCCTTCCGCACCAATACCACCGCCACCGTGACTTCCCACGAGCAACCCTTGCAGCTCGTGGAACTTCGACTCGGACATTCGAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACTCCAATAGGCGATGCTCTGTTTCCTTTTTTTCTGCGCGACCTGCTCCACCCACCCTTCCTCTCCAAATCCCACGTTCTTCGGTTTATGTCTTCCTTCAGCATCCCCATTGCCGCCTGCAATATCATCTTTACGGAGATCTCCTCCTTTGCGCTCCACTTGGCCGCCGGCAACGTCCATCGTAACTTACACATCGTCGTGGATGTGAATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTGAAGAATACTCTCCGCCTTCGATGAACGGGGTGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGACTGCAGTGTCTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAACAATTCATGTCCTCTCTGTAGAACCCAATTAGAACAATAA ATGTCTTTAACCTTCGGCGACTCTCTGTCCTTCCAATGTTCCTTCCGCACCAATACCACCGCCACCGTGACTTCCCACGAGCAACCCTTGCAGCTCGTGGAACTTCGACTCGGACATTCGAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACTCCAATAGGCGATGCTCTGTTTCCTTTTTTTCTGCGCGACCTGCTCCACCCACCCTTCCTCTCCAAATCCCACGTTCTTCGGTTTATGTCTTCCTTCAGCATCCCCATTGCCGCCTGCAATATCATCTTTACGGAGATCTCCTCCTTTGCGCTCCACTTGGCCGCCGGCAACGTCCATCGTAACTTACACATCGTCGTGGATGTGAATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTGAAGAATACTCTCCGCCTTCGATGAACGGGGTGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGACTGCAGTGTCTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAACAATTCATGTCCTCTCTGTAGAACCCAATTAGAACAATAA MSLTFGDSLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGDALFPFFLRDLLHPPFLSKSHVLRFMSSFSIPIAACNIIFTEISSFALHLAAGNVHRNLHIVVDVNVIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQLEQ Homology
BLAST of CmaCh02G005340 vs. ExPASy Swiss-Prot
Match: Q6AVN2 (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 6.8e-10 Identity = 32/80 (40.00%), Postives = 46/80 (57.50%), Query Frame = 0
BLAST of CmaCh02G005340 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 8.9e-10 Identity = 30/81 (37.04%), Postives = 45/81 (55.56%), Query Frame = 0
BLAST of CmaCh02G005340 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09 Identity = 30/78 (38.46%), Postives = 43/78 (55.13%), Query Frame = 0
BLAST of CmaCh02G005340 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09 Identity = 29/78 (37.18%), Postives = 46/78 (58.97%), Query Frame = 0
BLAST of CmaCh02G005340 vs. ExPASy Swiss-Prot
Match: E9QAU8 (E3 ubiquitin-protein ligase RNF165 OS=Mus musculus OX=10090 GN=Rnf165 PE=1 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 3.4e-09 Identity = 25/64 (39.06%), Postives = 40/64 (62.50%), Query Frame = 0
BLAST of CmaCh02G005340 vs. TAIR 10
Match: AT1G45180.1 (RING/U-box superfamily protein ) HSP 1 Score: 66.6 bits (161), Expect = 2.8e-11 Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 0
BLAST of CmaCh02G005340 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein ) HSP 1 Score: 65.5 bits (158), Expect = 6.3e-11 Identity = 30/81 (37.04%), Postives = 45/81 (55.56%), Query Frame = 0
BLAST of CmaCh02G005340 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein ) HSP 1 Score: 65.5 bits (158), Expect = 6.3e-11 Identity = 30/81 (37.04%), Postives = 45/81 (55.56%), Query Frame = 0
BLAST of CmaCh02G005340 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein ) HSP 1 Score: 64.7 bits (156), Expect = 1.1e-10 Identity = 29/78 (37.18%), Postives = 46/78 (58.97%), Query Frame = 0
BLAST of CmaCh02G005340 vs. TAIR 10
Match: AT4G05350.1 (RING/U-box superfamily protein ) HSP 1 Score: 63.5 bits (153), Expect = 2.4e-10 Identity = 27/66 (40.91%), Postives = 44/66 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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