CmaCh02G005330 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G005330
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionE3 ubiquitin-protein ligase At1g63170-like
LocationCma_Chr02: 2942001 .. 2942642 (+)
RNA-Seq ExpressionCmaCh02G005330
SyntenyCmaCh02G005330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCTCGCAAATGCCTCCACCCTCCGCTACTCTCTCCGCCGCAACCACGGCGCCGATCAATTCCTCCGATTCCGGCTGTGCTATTCCAGCCGTCTGATCTCCCGATCGCCGTCCGCCGGCCTTCCCTACGACATCCTGGAAGAAACTCCCTCGACTCCAATGGCGGATGCTCTGTTTCCTCTGCCTCTACGAGAGCTGGAAGATCCGTTATTCTGCCACGCTTACTTGATTGAATTGGTGTCCTCCTTGAACCTCGACTCCATGTCCTGCAACCCCATTGTCCAGAAGATCACGTCGTTGGTCACACAGTGGGCCGCCGTAGACTACGACGCGAAGTTCCAATTGGTGGCGGACATTGATTACATTCAAATGTTTTGGATGGAGAAGCGCCCGGGTTCAGTTGGGCGAGGTGTAATGGTGGAGGAGAAGGTGGTTCTGAAGGAAGCTGAAGTGGCGGCGGCGGAAAAGCAGGGAATTGGGGGAGAAGAGTGCAGTGTGTGCTACGAAAGCTATGAAGCAGAGAAGGGGGGAGAGAGGGAGGTGGCTAAAATCCCATGCGGCCATGTGTTTCACAAATCATGCATCCTCACCTGGTTTCAAAGGAGCAATTCGTGCCCTTTGTGTAGAGCCAAATTATAG

mRNA sequence

ATGCCTCTCGCAAATGCCTCCACCCTCCGCTACTCTCTCCGCCGCAACCACGGCGCCGATCAATTCCTCCGATTCCGGCTGTGCTATTCCAGCCGTCTGATCTCCCGATCGCCGTCCGCCGGCCTTCCCTACGACATCCTGGAAGAAACTCCCTCGACTCCAATGGCGGATGCTCTGTTTCCTCTGCCTCTACGAGAGCTGGAAGATCCGTTATTCTGCCACGCTTACTTGATTGAATTGGTGTCCTCCTTGAACCTCGACTCCATGTCCTGCAACCCCATTGTCCAGAAGATCACGTCGTTGGTCACACAGTGGGCCGCCGTAGACTACGACGCGAAGTTCCAATTGGTGGCGGACATTGATTACATTCAAATGTTTTGGATGGAGAAGCGCCCGGGTTCAGTTGGGCGAGGTGTAATGGTGGAGGAGAAGGTGGTTCTGAAGGAAGCTGAAGTGGCGGCGGCGGAAAAGCAGGGAATTGGGGGAGAAGAGTGCAGTGTGTGCTACGAAAGCTATGAAGCAGAGAAGGGGGGAGAGAGGGAGGTGGCTAAAATCCCATGCGGCCATGTGTTTCACAAATCATGCATCCTCACCTGGTTTCAAAGGAGCAATTCGTGCCCTTTGTGTAGAGCCAAATTATAG

Coding sequence (CDS)

ATGCCTCTCGCAAATGCCTCCACCCTCCGCTACTCTCTCCGCCGCAACCACGGCGCCGATCAATTCCTCCGATTCCGGCTGTGCTATTCCAGCCGTCTGATCTCCCGATCGCCGTCCGCCGGCCTTCCCTACGACATCCTGGAAGAAACTCCCTCGACTCCAATGGCGGATGCTCTGTTTCCTCTGCCTCTACGAGAGCTGGAAGATCCGTTATTCTGCCACGCTTACTTGATTGAATTGGTGTCCTCCTTGAACCTCGACTCCATGTCCTGCAACCCCATTGTCCAGAAGATCACGTCGTTGGTCACACAGTGGGCCGCCGTAGACTACGACGCGAAGTTCCAATTGGTGGCGGACATTGATTACATTCAAATGTTTTGGATGGAGAAGCGCCCGGGTTCAGTTGGGCGAGGTGTAATGGTGGAGGAGAAGGTGGTTCTGAAGGAAGCTGAAGTGGCGGCGGCGGAAAAGCAGGGAATTGGGGGAGAAGAGTGCAGTGTGTGCTACGAAAGCTATGAAGCAGAGAAGGGGGGAGAGAGGGAGGTGGCTAAAATCCCATGCGGCCATGTGTTTCACAAATCATGCATCCTCACCTGGTTTCAAAGGAGCAATTCGTGCCCTTTGTGTAGAGCCAAATTATAG

Protein sequence

MPLANASTLRYSLRRNHGADQFLRFRLCYSSRLISRSPSAGLPYDILEETPSTPMADALFPLPLRELEDPLFCHAYLIELVSSLNLDSMSCNPIVQKITSLVTQWAAVDYDAKFQLVADIDYIQMFWMEKRPGSVGRGVMVEEKVVLKEAEVAAAEKQGIGGEECSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRAKL
Homology
BLAST of CmaCh02G005330 vs. ExPASy Swiss-Prot
Match: Q9UKV5 (E3 ubiquitin-protein ligase AMFR OS=Homo sapiens OX=9606 GN=AMFR PE=1 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 5.5e-09
Identity = 23/62 (37.10%), Postives = 39/62 (62.90%), Query Frame = 0

Query: 152 VAAAEKQGIGGEECSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRA 211
           VA  E+  +  ++C++C++S +A +       K+PCGH+FH SC+ +W ++  SCP CR 
Sbjct: 328 VATPEELAVNNDDCAICWDSMQAAR-------KLPCGHLFHNSCLRSWLEQDTSCPTCRM 382

Query: 212 KL 214
            L
Sbjct: 388 SL 382

BLAST of CmaCh02G005330 vs. ExPASy Swiss-Prot
Match: Q9R049 (E3 ubiquitin-protein ligase AMFR OS=Mus musculus OX=10090 GN=Amfr PE=1 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 5.5e-09
Identity = 23/62 (37.10%), Postives = 39/62 (62.90%), Query Frame = 0

Query: 152 VAAAEKQGIGGEECSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRA 211
           VA  E+  +  ++C++C++S +A +       K+PCGH+FH SC+ +W ++  SCP CR 
Sbjct: 328 VATPEELAVNNDDCAICWDSMQAAR-------KLPCGHLFHNSCLRSWLEQDTSCPTCRM 382

Query: 212 KL 214
            L
Sbjct: 388 SL 382

BLAST of CmaCh02G005330 vs. ExPASy Swiss-Prot
Match: Q7ZW78 (E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-08
Identity = 30/87 (34.48%), Postives = 45/87 (51.72%), Query Frame = 0

Query: 127 WMEKRPGSVGRGVMVEEKVVLKEAEVAAAEKQGIGGEECSVCYESYEAEKGGEREVAKIP 186
           W ++ P    + V+    VV+   E      Q   G +C VC   +E ++     V ++P
Sbjct: 47  WDQRLPPPAAKAVVQSLPVVIISPE------QADKGVKCPVCLLEFEEQE----SVREMP 106

Query: 187 CGHVFHKSCILTWFQRSNSCPLCRAKL 214
           C H+FH  CIL W  ++NSCPLCR +L
Sbjct: 107 CKHLFHTGCILPWLNKTNSCPLCRLEL 123

BLAST of CmaCh02G005330 vs. ExPASy Swiss-Prot
Match: Q9Y4L5 (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 4.7e-08
Identity = 26/62 (41.94%), Postives = 36/62 (58.06%), Query Frame = 0

Query: 152 VAAAEKQGIGGEECSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRA 211
           V   ++Q   G EC VC E Y  E+    EV ++PC H FH SCI+ W +  ++CP+CR 
Sbjct: 215 VTVTQEQVDMGLECPVCKEDYTVEE----EVRQLPCNHFFHSSCIVPWLELHDTCPVCRK 272

Query: 212 KL 214
            L
Sbjct: 275 SL 272

BLAST of CmaCh02G005330 vs. ExPASy Swiss-Prot
Match: Q9CY62 (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus OX=10090 GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.7e-08
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 0

Query: 164 ECSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRAKL 214
           +C VC   +EAE+     V ++PC H+FH +CIL W  ++NSCPLCR +L
Sbjct: 87  KCPVCLLEFEAEE----TVIEMPCHHLFHSNCILPWLSKTNSCPLCRHEL 132

BLAST of CmaCh02G005330 vs. TAIR 10
Match: AT1G45180.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-09
Identity = 31/96 (32.29%), Postives = 53/96 (55.21%), Query Frame = 0

Query: 117 VADIDYIQMFWMEKRPGSVGRGVMVEEKVV--LKEAEVAAAEKQGIGGEECSVCYESYEA 176
           V ++ Y ++  +E+R G V  G + EE +   LK+ +  ++ +     E C VC E Y+ 
Sbjct: 543 VDNMTYEELLSLEERIGDVCTG-LNEETISNRLKQQKYKSSTRSSQEVEPCCVCQEEYKE 602

Query: 177 EKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCR 211
           E+    E+ ++ CGH FH  CI  W ++ N CP+C+
Sbjct: 603 EE----EIGRLECGHDFHSQCIKEWLKQKNLCPICK 633

BLAST of CmaCh02G005330 vs. TAIR 10
Match: AT4G12190.1 (RING/U-box superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 3.3e-09
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 0

Query: 163 EECSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRAKL 214
           E CS+C ES        R++ ++ C HVFH  C+L W +R N+CPLCR +L
Sbjct: 20  EPCSICLESL-VSGPKPRDITRMTCSHVFHNGCLLEWLKRKNTCPLCRTEL 69

BLAST of CmaCh02G005330 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 59.3 bits (142), Expect = 4.3e-09
Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 0

Query: 163 EECSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRA 212
           EECSVC   +E +  G R + K  CGHVFH  CI TWF+  +SCPLCRA
Sbjct: 111 EECSVCLSEFEEDDEG-RVLPK--CGHVFHVDCIDTWFRSRSSCPLCRA 156

BLAST of CmaCh02G005330 vs. TAIR 10
Match: AT4G05350.1 (RING/U-box superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 4.3e-09
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 0

Query: 163 EECSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRAKL 214
           E CS+C ES        R+V ++ C HVFH  C+L W +R N+CPLCR ++
Sbjct: 155 EPCSICLESL-VSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCPLCRTEI 204

BLAST of CmaCh02G005330 vs. TAIR 10
Match: AT1G18770.1 (RING/U-box superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 7.4e-09
Identity = 24/52 (46.15%), Postives = 31/52 (59.62%), Query Frame = 0

Query: 162 GEECSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRAKL 214
           GE C +C E +       R V  +PCGH F   C+L WF+ ++SCPLCR KL
Sbjct: 56  GEMCIICLEEFSE----GRRVVTLPCGHDFDDECVLKWFETNHSCPLCRFKL 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9UKV55.5e-0937.10E3 ubiquitin-protein ligase AMFR OS=Homo sapiens OX=9606 GN=AMFR PE=1 SV=2[more]
Q9R0495.5e-0937.10E3 ubiquitin-protein ligase AMFR OS=Mus musculus OX=10090 GN=Amfr PE=1 SV=2[more]
Q7ZW782.7e-0834.48E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2[more]
Q9Y4L54.7e-0841.94E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2[more]
Q9CY624.7e-0848.00E3 ubiquitin-protein ligase RNF181 OS=Mus musculus OX=10090 GN=Rnf181 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
AT1G45180.12.5e-0932.29RING/U-box superfamily protein [more]
AT4G12190.13.3e-0945.10RING/U-box superfamily protein [more]
AT3G62690.14.3e-0957.14AtL5 [more]
AT4G05350.14.3e-0945.10RING/U-box superfamily protein [more]
AT1G18770.17.4e-0946.15RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 165..209
e-value: 7.3E-9
score: 45.5
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 164..210
e-value: 1.7E-13
score: 50.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 165..210
score: 13.625259
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 164..210
e-value: 0.0056
score: 9.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 137..213
e-value: 2.6E-19
score: 70.7
NoneNo IPR availablePANTHERPTHR45931:SF9E3 UBIQUITIN-PROTEIN LIGASE RNF12-B-LIKEcoord: 63..213
NoneNo IPR availablePANTHERPTHR45931SI:CH211-59O9.10coord: 63..213
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 154..212

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G005330.1CmaCh02G005330.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding