CmaCh02G005120 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G005120
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Plant protein of unknown function (DUF863)
Location	Cma_Chr02: 2773839 .. 2775873 (+)
RNA-Seq Expression	CmaCh02G005120
Synteny	CmaCh02G005120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAGCTGTTGTTTGTCACTCTCTCTTGCTTGCATCTCATTTCTCTCTTTCAGGTTTTTTTTTTCTCTCTCTATCTCTAGTTTTCTTCCGGGTTTTTTCTCGAAATTTTCCTTTTTTGTTCTTGTTACCGGTTGAAACTGAGATACGAACACTTAACTGATTCAAGAGTGTTCATATGACTCGGTAAATTGATGTAACCTCGATTATTTTTATTATTATTTTTTTTTCATGAATTTTTTAAAAGTTGAAAATTCAGTTCAAATAGTCTATTAACATTTTTTTTTTTATTGGGTTAGCCTAATTAACTCGAAATATTTTTTTAAAAAAATAATTAACTTGGAAATGTTTGATATTCCAATTTTAGTTATTAATTTTATTTTTAAAATAGAATAATCTGAATGTAATTTTTCTTTCTACTTGATTTAATTCATTAATTTAACCATCAACTTTTTTTAAATGACAGTAGATGTTTTATTTATTTTAAAACAAAAATATTTTTTTAAATAAAAGTAACAAAATAAAATGATATATATTTATTTTATTATTATTTGGCCAACACAATTATGAACTATTTATGATGAAGATATTTTCGTACGAGAAATTGCAATATTGTGGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCACTGTCGCTAGTGATATCATAACAGCCATACTTCTGTTTTATAAACACTCACTGTTTCTCTTTTATATTTCTTCCATTGTTAGGCAAAAATCCAAAGCTCTCTTTCTTCCATCATCCATTTCTAACACCCAAAACAAAGCTCCAAAATTGGCACATCAATGGCGAAGCTGGCGGAACAGGAATCTCAGAGCAAGGAGAACATGAAGAACGCCATGTTAAAGCACGAGCAGACATTTCGTCATCAAGTACGTTTCTTTATCCCATTTTCTCATCTGGGTTTGTGTTTTTTTACACTAAAAATCTTGCTTTCAGGTGTATGAACTCCACAGATTGTACAGAATTCAGAAGCTTTTGATGAAGAACATAACAGAAAACAGAGGAAAAACAGAGAGATGGGAAGTGAAAAATGAAGAAGAAGAAGAAGATGATGATGAAAAGGATAGTGATTTTATTGAAGAAAGTGAGGTTGAATTGACATTGGGTCCTTCAAATTACAGCAATCAAGTTGGTGGAGGAAGGAGAAGAAGAAGAAAGAGCTGCTTCTCTTCTTCTTCTTCGTCTTCAACCACAGGCTCTGCTCAAAAAAATCGAAGCTTTTACAGACATGGTGAGCTTGTTGGTGGCTCTGAAATGGGGTTTGTGGGGTTTCTTGAAGATGAGATGAGGCTTTCACAGCACCATCCAAATCCATGGCTTTGTCAACCTCTAACCCTTAATCTCACTTCATAAACACTTCGATTCTTTTATGTTCTGCTTATTTTTTAGTTTTCTTGGCTGATTGGGCGTCTAATCTTCTCTTTGTACAAGTTTATAACCAAGTTAGTATAATTATAATCGCGCGCCTTTTAGGTCTTGTTTGATAATCATTTGTTAGAATGATAGCTCCGTTGGGTCGT

mRNA sequence

GGAAGCTGTTGTTTGTCACTCTCTCTTGCTTGCATCTCATTTCTCTCTTTCAGGCAAAAATCCAAAGCTCTCTTTCTTCCATCATCCATTTCTAACACCCAAAACAAAGCTCCAAAATTGGCACATCAATGGCGAAGCTGGCGGAACAGGAATCTCAGAGCAAGGAGAACATGAAGAACGCCATGTTAAAGCACGAGCAGACATTTCGTCATCAAGTGTATGAACTCCACAGATTGTACAGAATTCAGAAGCTTTTGATGAAGAACATAACAGAAAACAGAGGAAAAACAGAGAGATGGGAAGTGAAAAATGAAGAAGAAGAAGAAGATGATGATGAAAAGGATAGTGATTTTATTGAAGAAAGTGAGGTTGAATTGACATTGGGTCCTTCAAATTACAGCAATCAAGTTGGTGGAGGAAGGAGAAGAAGAAGAAAGAGCTGCTTCTCTTCTTCTTCTTCGTCTTCAACCACAGGCTCTGCTCAAAAAAATCGAAGCTTTTACAGACATGGTGAGCTTGTTGGTGGCTCTGAAATGGGGTTTGTGGGGTTTCTTGAAGATGAGATGAGGCTTTCACAGCACCATCCAAATCCATGGCTTTGTCAACCTCTAACCCTTAATCTCACTTCATAAACACTTCGATTCTTTTATGTTCTGCTTATTTTTTAGTTTTCTTGGCTGATTGGGCGTCTAATCTTCTCTTTGTACAAGTTTATAACCAAGTTAGTATAATTATAATCGCGCGCCTTTTAGGTCTTGTTTGATAATCATTTGTTAGAATGATAGCTCCGTTGGGTCGT

Coding sequence (CDS)

ATGGCGAAGCTGGCGGAACAGGAATCTCAGAGCAAGGAGAACATGAAGAACGCCATGTTAAAGCACGAGCAGACATTTCGTCATCAAGTGTATGAACTCCACAGATTGTACAGAATTCAGAAGCTTTTGATGAAGAACATAACAGAAAACAGAGGAAAAACAGAGAGATGGGAAGTGAAAAATGAAGAAGAAGAAGAAGATGATGATGAAAAGGATAGTGATTTTATTGAAGAAAGTGAGGTTGAATTGACATTGGGTCCTTCAAATTACAGCAATCAAGTTGGTGGAGGAAGGAGAAGAAGAAGAAAGAGCTGCTTCTCTTCTTCTTCTTCGTCTTCAACCACAGGCTCTGCTCAAAAAAATCGAAGCTTTTACAGACATGGTGAGCTTGTTGGTGGCTCTGAAATGGGGTTTGTGGGGTTTCTTGAAGATGAGATGAGGCTTTCACAGCACCATCCAAATCCATGGCTTTGTCAACCTCTAACCCTTAATCTCACTTCATAA

Protein sequence

MAKLAEQESQSKENMKNAMLKHEQTFRHQVYELHRLYRIQKLLMKNITENRGKTERWEVKNEEEEEDDDEKDSDFIEESEVELTLGPSNYSNQVGGGRRRRRKSCFSSSSSSSTTGSAQKNRSFYRHGELVGGSEMGFVGFLEDEMRLSQHHPNPWLCQPLTLNLTS

Homology

[Close]

BLAST of CmaCh02G005120 vs. TAIR 10
Match: AT5G67390.1 (unknown protein; BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 6.2e-11
Identity = 61/172 (35.47%), Postives = 88/172 (51.16%), Query Frame = 0


Query: 12  KENMKNAMLKHEQTFRHQVYELHRLYRIQKLLMKNITENRGKTERWEVKNE-----EEEE 71
           K+ MK AMLKHE+TF+ QVYELHRLY++QK+LMKN+  N+  T+   V +         +
Sbjct: 10  KQCMKMAMLKHEETFKQQVYELHRLYQVQKILMKNMEINKFTTKNNHVNSGLGTFIRRVD 69

Query: 72  DDDEKDSDF---------IEESEVELTLGPSNYSNQVGGGRRRRRKSCFSSSSSSSTTGS 131
           ++ ++ ++F         ++ESE+ELTLGPS Y    G    R  K    +S      GS
Sbjct: 70  NEIDRPANFSGGNNNIEIMDESEIELTLGPSCYG---GDEMMRMNKKKKKNSLPEMMDGS 129

Query: 132 AQKNRSFYRHGELVGGSEMGFVGFLEDEMR----LSQHHPNPWLCQPLTLNL 166
               R  +       GS       LE+++R    +      PWL Q LTLN+
Sbjct: 130 LNSGRRSFSSSST--GSSNNNNNNLEEQVRQERMMKHQKQQPWL-QALTLNV 175

[Close]

BLAST of CmaCh02G005120 vs. TAIR 10
Match: AT5G67390.2 (unknown protein; BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1); Has 186 Blast hits to 186 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 6.2e-11
Identity = 61/172 (35.47%), Postives = 88/172 (51.16%), Query Frame = 0


Query: 12  KENMKNAMLKHEQTFRHQVYELHRLYRIQKLLMKNITENRGKTERWEVKNE-----EEEE 71
           K+ MK AMLKHE+TF+ QVYELHRLY++QK+LMKN+  N+  T+   V +         +
Sbjct: 10  KQCMKMAMLKHEETFKQQVYELHRLYQVQKILMKNMEINKFTTKNNHVNSGLGTFIRRVD 69

Query: 72  DDDEKDSDF---------IEESEVELTLGPSNYSNQVGGGRRRRRKSCFSSSSSSSTTGS 131
           ++ ++ ++F         ++ESE+ELTLGPS Y    G    R  K    +S      GS
Sbjct: 70  NEIDRPANFSGGNNNIEIMDESEIELTLGPSCYG---GDEMMRMNKKKKKNSLPEMMDGS 129

Query: 132 AQKNRSFYRHGELVGGSEMGFVGFLEDEMR----LSQHHPNPWLCQPLTLNL 166
               R  +       GS       LE+++R    +      PWL Q LTLN+
Sbjct: 130 LNSGRRSFSSSST--GSSNNNNNNLEEQVRQERMMKHQKQQPWL-QALTLNV 175

The following BLAST results are available for this feature:

BLAST of CmaCh02G005120 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G005120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67390.1	6.2e-11	35.47	unknown protein; BEST Arabidopsis thaliana protein match is: Plant protein of un...	[more]
AT5G67390.2	6.2e-11	35.47	unknown protein; BEST Arabidopsis thaliana protein match is: Plant protein of un...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 5..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..121
None	No IPR available	PANTHER	PTHR33167	FAMILY NOT NAMED	coord: 9..166
None	No IPR available	PANTHER	PTHR33167:SF45	BNAC02G16680D PROTEIN	coord: 9..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G005120.1	CmaCh02G005120.1	mRNA