CmaCh02G004420 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G004420
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionProtein of unknown function (DUF1645)
LocationCma_Chr02: 2252625 .. 2254654 (-)
RNA-Seq ExpressionCmaCh02G004420
SyntenyCmaCh02G004420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTTACTTGGCATAAGAATCGAGCTTACTCGACCTTTGTATTGACATGAATTTTTCATTTTTAGGATTTGATTTCTCCATTTATTTTCTTTCACCCTCATACGAGTCTTCCCCCCACTAATTTTCTATTCTAACTTATAAGCTTATAATTATATATATATATTTGTATGGTGGATCCATTTTTGATCAATTTAGGAGGTTTTTCCAATTCATCTCCAACCCAATTTCCCTCAACTTTACTCTTCTTCCTCTCCCACCTAATCCTTCTTCTTCTTCTTCTTCTCTTTTCCATTCATTTCCCATAAAAGCTTCAGCCGGCGGCCGAGTTTTCTTAGAGATGGAAGTAGTTGTTAGAGTCCCTCCGGCTGCCGACATCTTCAACATCGGCGGCAGCCCTTGCTCCTCCCACTACTTGTCCGCTCCTACCAGCCCCTCCCATGCTTTCAACTTCTTCTCCTTCGACGACGACGATGTTCCCATTGGCTCTCCCTCCGCTGTCCCCTTCGGCTGGGAGGAGAAGCCCGGCATCCCCAAGTCCCCCAAGTCCTCCGGTACCGATCAGGATTTTGAATTTGATTTTACTTCTCAGTCGTTTAGTAAAGCTTCTCTCTCCGCCGATGAGCTCTTCGACGGCGGTAAGATCAAGCCGCTTAAACTCCCGCCTGGATTTCAGGTACCTTTTCAATTGTCTCTCTTAATTTATCTATATTTTACATCATTACTCATTTCAAAGAAATTTTTAAAACGTTCTTATCATTTCTAGTATTATTGTTTTTTTATTTAAGGTTATTAACTGTAAATTATTTTTTAATAAGTATTTTTAAATTTTTTAAAAAATGTAAAGTTTTTTATTGAAAATATTTAAGAGGAAGGTTGGAAGTTCTTTTTGAAATAATATTGAAAATAAAGTATTAACTGAAAAACATTTATGGGTAACTTTTTCTCAAATTTGAAAATATTATTCAAATAAATTTAATATTTGATTTCTTTGATTATTTTTTTAATTTTAAGAATGGTACGGTAAACTTTTTTTTTCCTAAAAATTTAAAGGTATTAATATTAATTTCGGAAGCCAATGAGTTGTCCATCAAATAACTATAAATATTTTTTAATTTTTAAAAAATGTAAAACTATTTTTGAATTTTTTAATATTTTTAAAAAATGTAAAACTATTTTTAAATTTTTTTAAAAGTTGAAGAATGTTATAGATGATATTTTTTAAACGATTTTAAAAGTAAAATATTAACTTTCAATCTAGATAGTGGTGTTTTAATATTTTTAAAAAATATTTACCGGTAGTTTTTTCTTAATTTTTTTTTATGGTATTATCGAAATATTTGAAAGCAAAAATGTAAAATTGAAAATATTTTATTAATTGAAGCTAGAATTTTGAAAAATCTTATTTAAATTTAGTTAATTTAGTATTTTATTCAGTCGAAAATGTGGTCCCCAAGACCGCCTCGAAAAGCAGAGAGCAGCATCGACGACCCATTTGAAGCAGCGCTGATGAAGGAAACTGCTCCCGACGGTGGAACAACCGATCAAATCTCATACATTTCCTCTCAAACTGCGCTCGACGGAGACGACGGCGGCTCCCTCGCCGCCGCCGCCGTCAAATCAAAGTCGGCGATCTCATTTTCAAAAGCCAACAAAAGATGGAGGCTGAGGGACTTATTGTTTCGCAGTGCATCGGAAGGCCGATCGACGGCGAAAGCGGATAAATTGAGGTCGACGTACGTTGTGATTTCTGAAAATATGGACAACGACGTGAAGATTTCGAGTTTCCGGTCGGCCGACGGCGGAGATTCGAGGTTTCATTCCACGGCGGCGAACCGAACGGTTTCTGAGGAGTTGATGATGACGAAGAAGAGACTTTTGCCCATCAAACCGGGTTTTCTGGGCCGTTTCTGTGGTTTAACCGGTCCAGTATGCCGGAGATTTCCAGGGGAATTGGGTCGTTGACACGTGGATGAACCAACAAAATTTAAAATTTTAAAATTTTAATTTTTTTGGGATTGTGTTTGTGGGTG

mRNA sequence

TTGTTACTTGGCATAAGAATCGAGCTTACTCGACCTTTGTATTGACATGAATTTTTCATTTTTAGGATTTGATTTCTCCATTTATTTTCTTTCACCCTCATACGAGTCTTCCCCCCACTAATTTTCTATTCTAACTTATAAGCTTATAATTATATATATATATTTGTATGGTGGATCCATTTTTGATCAATTTAGGAGGTTTTTCCAATTCATCTCCAACCCAATTTCCCTCAACTTTACTCTTCTTCCTCTCCCACCTAATCCTTCTTCTTCTTCTTCTTCTCTTTTCCATTCATTTCCCATAAAAGCTTCAGCCGGCGGCCGAGTTTTCTTAGAGATGGAAGTAGTTGTTAGAGTCCCTCCGGCTGCCGACATCTTCAACATCGGCGGCAGCCCTTGCTCCTCCCACTACTTGTCCGCTCCTACCAGCCCCTCCCATGCTTTCAACTTCTTCTCCTTCGACGACGACGATGTTCCCATTGGCTCTCCCTCCGCTGTCCCCTTCGGCTGGGAGGAGAAGCCCGGCATCCCCAAGTCCCCCAAGTCCTCCGGTACCGATCAGGATTTTGAATTTGATTTTACTTCTCAGTCGTTTAGTAAAGCTTCTCTCTCCGCCGATGAGCTCTTCGACGGCGGTAAGATCAAGCCGCTTAAACTCCCGCCTGGATTTCAGTCGAAAATGTGGTCCCCAAGACCGCCTCGAAAAGCAGAGAGCAGCATCGACGACCCATTTGAAGCAGCGCTGATGAAGGAAACTGCTCCCGACGGTGGAACAACCGATCAAATCTCATACATTTCCTCTCAAACTGCGCTCGACGGAGACGACGGCGGCTCCCTCGCCGCCGCCGCCGTCAAATCAAAGTCGGCGATCTCATTTTCAAAAGCCAACAAAAGATGGAGGCTGAGGGACTTATTGTTTCGCAGTGCATCGGAAGGCCGATCGACGGCGAAAGCGGATAAATTGAGGTCGACGTACGTTGTGATTTCTGAAAATATGGACAACGACGTGAAGATTTCGAGTTTCCGGTCGGCCGACGGCGGAGATTCGAGGTTTCATTCCACGGCGGCGAACCGAACGGTTTCTGAGGAGTTGATGATGACGAAGAAGAGACTTTTGCCCATCAAACCGGGTTTTCTGGGCCGTTTCTGTGGTTTAACCGGTCCAGTATGCCGGAGATTTCCAGGGGAATTGGGTCGTTGACACGTGGATGAACCAACAAAATTTAAAATTTTAAAATTTTAATTTTTTTGGGATTGTGTTTGTGGGTG

Coding sequence (CDS)

ATGGAAGTAGTTGTTAGAGTCCCTCCGGCTGCCGACATCTTCAACATCGGCGGCAGCCCTTGCTCCTCCCACTACTTGTCCGCTCCTACCAGCCCCTCCCATGCTTTCAACTTCTTCTCCTTCGACGACGACGATGTTCCCATTGGCTCTCCCTCCGCTGTCCCCTTCGGCTGGGAGGAGAAGCCCGGCATCCCCAAGTCCCCCAAGTCCTCCGGTACCGATCAGGATTTTGAATTTGATTTTACTTCTCAGTCGTTTAGTAAAGCTTCTCTCTCCGCCGATGAGCTCTTCGACGGCGGTAAGATCAAGCCGCTTAAACTCCCGCCTGGATTTCAGTCGAAAATGTGGTCCCCAAGACCGCCTCGAAAAGCAGAGAGCAGCATCGACGACCCATTTGAAGCAGCGCTGATGAAGGAAACTGCTCCCGACGGTGGAACAACCGATCAAATCTCATACATTTCCTCTCAAACTGCGCTCGACGGAGACGACGGCGGCTCCCTCGCCGCCGCCGCCGTCAAATCAAAGTCGGCGATCTCATTTTCAAAAGCCAACAAAAGATGGAGGCTGAGGGACTTATTGTTTCGCAGTGCATCGGAAGGCCGATCGACGGCGAAAGCGGATAAATTGAGGTCGACGTACGTTGTGATTTCTGAAAATATGGACAACGACGTGAAGATTTCGAGTTTCCGGTCGGCCGACGGCGGAGATTCGAGGTTTCATTCCACGGCGGCGAACCGAACGGTTTCTGAGGAGTTGATGATGACGAAGAAGAGACTTTTGCCCATCAAACCGGGTTTTCTGGGCCGTTTCTGTGGTTTAACCGGTCCAGTATGCCGGAGATTTCCAGGGGAATTGGGTCGTTGA

Protein sequence

MEVVVRVPPAADIFNIGGSPCSSHYLSAPTSPSHAFNFFSFDDDDVPIGSPSAVPFGWEEKPGIPKSPKSSGTDQDFEFDFTSQSFSKASLSADELFDGGKIKPLKLPPGFQSKMWSPRPPRKAESSIDDPFEAALMKETAPDGGTTDQISYISSQTALDGDDGGSLAAAAVKSKSAISFSKANKRWRLRDLLFRSASEGRSTAKADKLRSTYVVISENMDNDVKISSFRSADGGDSRFHSTAANRTVSEELMMTKKRLLPIKPGFLGRFCGLTGPVCRRFPGELGR
Homology
BLAST of CmaCh02G004420 vs. TAIR 10
Match: AT2G15760.1 (Protein of unknown function (DUF1645) )

HSP 1 Score: 97.4 bits (241), Expect = 1.9e-20
Identity = 96/302 (31.79%), Postives = 143/302 (47.35%), Query Frame = 0

Query: 1   MEVVVRVPPAADIFNIGGSPCSSHYLSAPTSPSH-AFNFFSFDDDDVPIGSPSAVPFGWE 60
           ME+ V    AA++ N   S  SS Y++AP+SP+    NFFS      P  + S +PF W+
Sbjct: 1   MEIEVAEAAAAEL-NF-DSTTSSPYITAPSSPTRFGNNFFSAPTSPSP-STSSNIPFDWD 60

Query: 61  EKPGIPKSPKSSGTDQDFEFDFTSQSFSKASLSADELFDGGKIKPLKLPPGFQSKMWSPR 120
           ++P  PK   + G + DFEF+F+ Q    +  +ADELFDGGKI+PL+ P      + SPR
Sbjct: 61  DQPRTPKKRSAIGFEDDFEFNFSGQLEKTSFSAADELFDGGKIRPLRTP--LTPTVSSPR 120

Query: 121 PPRKAESSIDDPFEAALMKETAPDGGTTD----------QISYISSQTALDGDDGGSLAA 180
                    DD  +    +         D          ++S I      +      +A+
Sbjct: 121 SRGLEIEDSDDQKDRGRDRSPGSSSSRYDRKGSRSMSPLRVSDIMVDEEEEVQSTKMVAS 180

Query: 181 AAVKSKSAISFS------KANKRWRLRD-LLFRSASEGRSTAKADKLRSTYVVISENMDN 240
                KS++  S      +A K+W+L+D LLFRSAS+GR     + L + Y ++++    
Sbjct: 181 NTSNQKSSVFLSAILFPGRAYKKWKLKDLLLFRSASDGRPIPTKESL-NRYDILTKKDAE 240

Query: 241 DVKISSFRSADGGDS----------------RFHSTAANRTVSEELMMTKKRLLPIKPGF 269
           +V+ SS RS +  +S                  H T  NR VSEEL   +K  LP K G+
Sbjct: 241 EVRNSSIRSRESCESSVSRSRRRNGAVVSAHEMHYT-ENRAVSEEL--KRKTFLPYKQGW 293

BLAST of CmaCh02G004420 vs. TAIR 10
Match: AT2G26530.1 (Protein of unknown function (DUF1645) )

HSP 1 Score: 76.3 bits (186), Expect = 4.6e-14
Identity = 91/306 (29.74%), Postives = 125/306 (40.85%), Query Frame = 0

Query: 22  SSHYLSAPTSPSHAFNFFSFDDDDVPIGSPS---AVPFGWEEKPGIP-KSPKSSGTDQDF 81
           S  +LSAPTSP   FN F  + ++    + S    VPF WEE PG P K       D DF
Sbjct: 16  SGCFLSAPTSP-RRFNEFYREFEEAATRNFSDRLTVPFDWEETPGTPRKITNDDDDDIDF 75

Query: 82  EFDFTSQSFSKASLSADELFDGGKIKPLKLPP------GFQSKMWSPRPPRKAESSIDDP 141
            F+   +     SL A+ELFDGGKIKPLK PP        Q ++ SPR PR   +   + 
Sbjct: 76  AFEIGGK-LETTSLFAEELFDGGKIKPLKPPPYLQLDHHHQPQILSPRSPRSPIAHGKNI 135

Query: 142 FEAALMKETAPDGGTTDQISYISSQTALDGDDG--------------------------- 201
              A      PD     +++   ++  L  + G                           
Sbjct: 136 IRKAFSPRKKPDNVDPFEVAMDKARNGLGEERGRGRRQNSGRRVARSLSPFRVSAYPWEE 195

Query: 202 -----------------GSLAAAAVKSKSAI--SFSKANKRWRLRD-LLFRSASEGRSTA 261
                            G+L++    S SA     S ++K+WRL+D LLFRSASEGR+  
Sbjct: 196 QEQEQEQEQRDVQEQRKGTLSSIPSTSSSACVSCKSSSSKKWRLKDFLLFRSASEGRARH 255

Query: 262 KADKLRSTYVVISENMDNDVKISSFRSADGGDSRFHSTAANRTVSEELMMTKKRLLPIKP 271
             D ++ T+  +    + D K SS R         H        +E   + KK  LP   
Sbjct: 256 NKDSVK-TFTSLFRKQE-DTKNSSSRGRGSSSVSAHEFHYMSKKAETKDLKKKTFLPYMQ 315

BLAST of CmaCh02G004420 vs. TAIR 10
Match: AT2G26530.2 (Protein of unknown function (DUF1645) )

HSP 1 Score: 76.3 bits (186), Expect = 4.6e-14
Identity = 88/279 (31.54%), Postives = 120/279 (43.01%), Query Frame = 0

Query: 22  SSHYLSAPTSPSHAFNFFSFDDDDVPIGSPS---AVPFGWEEKPGIP-KSPKSSGTDQDF 81
           S  +LSAPTSP   FN F  + ++    + S    VPF WEE PG P K       D DF
Sbjct: 16  SGCFLSAPTSP-RRFNEFYREFEEAATRNFSDRLTVPFDWEETPGTPRKITNDDDDDIDF 75

Query: 82  EFDFTSQSFSKASLSADELFDGGKIKPLKLPP------GFQSKMWSPRPPRKAESSIDDP 141
            F+   +     SL A+ELFDGGKIKPLK PP        Q ++ SPR PR   +   + 
Sbjct: 76  AFEIGGK-LETTSLFAEELFDGGKIKPLKPPPYLQLDHHHQPQILSPRSPRSPIAHARNG 135

Query: 142 FEAALMKETAPDGG-----------------TTDQISYISSQTALDGDDGGSLAAAAVKS 201
                 +    + G                    +      Q  +     G+L++    S
Sbjct: 136 LGEERGRGRRQNSGRRVARSLSPFRVSAYPWEEQEQEQEQEQRDVQEQRKGTLSSIPSTS 195

Query: 202 KSAI--SFSKANKRWRLRD-LLFRSASEGRSTAKADKLRSTYVVISENMDNDVKISSFRS 261
            SA     S ++K+WRL+D LLFRSASEGR+    D ++ T+  +    + D K SS R 
Sbjct: 196 SSACVSCKSSSSKKWRLKDFLLFRSASEGRARHNKDSVK-TFTSLFRKQE-DTKNSSSRG 255

Query: 262 ADGGDSRFHSTAANRTVSEELMMTKKRLLPIKPGFLGRF 271
                   H        +E   + KK  LP     +GRF
Sbjct: 256 RGSSSVSAHEFHYMSKKAETKDLKKKTFLPYMQ--IGRF 288

BLAST of CmaCh02G004420 vs. TAIR 10
Match: AT3G62630.1 (Protein of unknown function (DUF1645) )

HSP 1 Score: 42.7 bits (99), Expect = 5.6e-04
Identity = 49/150 (32.67%), Postives = 67/150 (44.67%), Query Frame = 0

Query: 8   PPAADIFNIGGSPCSSHYLSAPTSPSHA---FNFFSFDDDDVPIGSPSAVPFGWEEKPGI 67
           P  +D F   GS CS+ ++SAP+SP        FFS           S + F        
Sbjct: 15  PRFSDDFG-SGSACSTPFVSAPSSPGRGPPPGYFFS--------APSSPMHFFLCSASSS 74

Query: 68  PKSPKSSGTDQ--DFEFDFTSQSFSKAS-------LSADELFDGGKIKPLKLPPGFQ-SK 127
            ++PK   T    DFEFDF+S+  S +         SA+ELF  G+IKP+KL    Q  +
Sbjct: 75  SENPKKLDTSSCGDFEFDFSSRLSSSSGPLGGVSMTSAEELFSNGQIKPMKLSSHLQRPQ 134

Query: 128 MWSPRPPRKAESSIDDPFEAALMKETAPDG 145
           + SP    + E   DD        ET P+G
Sbjct: 135 ILSPLLDLENEEEDDD-------DETKPNG 148

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT2G15760.11.9e-2031.79Protein of unknown function (DUF1645) [more]
AT2G26530.14.6e-1429.74Protein of unknown function (DUF1645) [more]
AT2G26530.24.6e-1431.54Protein of unknown function (DUF1645) [more]
AT3G62630.15.6e-0432.67Protein of unknown function (DUF1645) [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012442Protein of unknown function DUF1645, plantPFAMPF07816DUF1645coord: 93..246
e-value: 5.8E-19
score: 69.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..127
NoneNo IPR availablePANTHERPTHR33095:SF81OS02G0761300 PROTEINcoord: 23..268
NoneNo IPR availablePANTHERPTHR33095FAMILY NOT NAMEDcoord: 23..268

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G004420.1CmaCh02G004420.1mRNA