CmaCh02G003890 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G003890
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionSNF1-related protein kinase regulatory subunit gamma-1-like
LocationCma_Chr02: 1971457 .. 1973887 (+)
RNA-Seq ExpressionCmaCh02G003890
SyntenyCmaCh02G003890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCTGGAATCAAGTGGCTTGGAGTGGTTTGACAGCATAGTGGACAAAGTTATATCGAAGTTTCGGTAAGGAACATCACACCATCACATGAATAACAGATTGATCTATATGGAATTGAATAACATAATTGCTTCCTTTTCCTTTCTTGATCATTGTCAATTCAGGTTTCATAATGAAGAGAATGTTCTTCACGTCTATGGCGATCAAAACATTATGGAAGCCTTTCATTTACTATGGGAGAAACAAATGGGTGCAGTTGCTGTAACAGATAGGGAAAGTAAGAGCCTCATTGGTTGTTTGAGGAACAGCGACACATATCTTCTATTGGAGAAGGAAGATCTATTTCATAATAGAAAGTAAGTTCATTTGAAGCCCTTCTTTGTTTTGATGATCTGAATAAATCCTCACATTCAAAATTTTAAAGACTGAACTTGTAATTTAAACAATAGCATATGGTAAGGATTTAAGCTTAGAGATGCCATTGCCAATGGATCGTTAGTGATGAATTGCAGGAGGCTAACAGTGAAGGAGTTCATGCATATGGAATCGAGTAAAGAACAAGCAGACTCTAACCCAACAGTCAAAGGGGGCCAGAGGGCACTTACCTTGTCGAGCGCTCGTCCTCTAGTTAAGTGCAAAGTTCCAAATATGCACACTCCAGTCACCATCAGGAGAGATGACACTCTGAAGCAAGTGATGAAAACTATGGCAGAAACAAATAGCAGTTTCAGCTTTCTTGTCAATAGTTCCCACCAAGCAACAGGGATACTCACCGTGGGAGACGTAATAACTCAGTTTGCTCCGCCCTGTATGGATTCAACCATTCAAGGAGGCGGTTTTTTTGAATCTGCTCTGGAACATACTGGCTGTCAGATTAGAAATGGAACCTTAATTTGTAACAAAAGATCTTAGATAATGAGCTGAGTTTAACCATCTGAGGAAAATAATGTACCAGAGAAGAGGTGGGGTTGTTCATCTGCATGGTTTCCATTACCTGATTGGTCAAGACTCCACAAATTTCCATCCTATATTGATATTGACAGCTTCGGACTACTGAATGTTGTTCCTCTAACCACTTCAACCATATAATGGTTGTATGTTAGTTTTCTTCCTGGAAAAAGTGAGAAACGCTAAAATCATGTGCAAAAAGTGGTAGCATATATTGAGAAAGAACCACGCAGAATACAAAATCATTCAAAATTATAGAATTGTATACAGGCTCGTTGCTCGTTTCTTTACTGTAAATGGGTGGATGCTCACGTTTGCCTTCAGCCCCAGGAGATACATCGTGAATAATCGAGCACAAAACCATATAAAGGAACCATTCTTCCATTCAGGCAGTGGTGGCAACTGTAACGAGCTTATCCAGAAGCTTAATTTAGCTCTCTAGCAGTTCAAACTACTTGGGTCTGAGTTGATGATGGCCAGGAGTTCGATAGAAATAACTCCATTTCAAGATATCAGTAGTGTCGAAACTTAAGAGGGTTGTCAAATACCCTCGGTATTCCAGACCAGTGAAGATCCTCTTCTGATGAACTCACATGGCTGAAGCCCAGTCACTGTCTTGCCCATCAATGCCATAGCAGCTATACTGGGCATTGGCTTATTTAAAATTGGCCTAGAACATTGTGATTTGTGAACCACAGCAGTTTCAAGATTTCGTTCAGAAGATGTTGATCTATTATGACATAATCTTCGAATCCAGGGACTGGAGAGTATCATTTCTCGATTTTTTAATCTCAAGTTGCTGCACAAGTCACTAGCTTTTACTATAGTAGCCGTTTGGCCAACCGCCAATTGCTCTTGTCCATGGAGTGGACCCCTAGAGCGATCAGAGCTGGTTGAGCTGCGTTTCATTTTATTGAAGAGCTGATTGGCTTTATCACAGGAAGACTCTTCCACCTTTTTCGTGCTCTTTGAGTCATGAACAGACTCTGAAGCGCATGGCCTAAGACGTTTAACCCACCCACTGTCTATCTCCCGTTTAGAAGAGTCATCTGGAGGGACAATGGAATTCAAAAACCTTTGCTGCTCAGCATTTGAAAGGAGGTGTTCTGCATCTAAAGTTTGTGTTTTAGAGGTACTTGACTCCCCGTTTTCCATCAGGCTTGTAGAAGTAGAACGATTGGGTGGCCTTTCGTTTATATTAAGTAATCTTTTCTTCGGCAGCGGACCTCCAATTTGCTTTCTAACCGAACCAGTTGCACTCACAGAGAGCAGTGGTGATTTTGAACTCCTCAACTCCTGCAAATCCCAGAGCCATTTTAGTTCAGTAAAAAACTTCGTAACAGTTGAAAATTCTTCGACATAATCCTCCAATACCATCAATTCCAACGGTAATTAACATGTACGAGGCTTGATGAGCTAACCATCCATTCTGCATTTGTATTTTGATGAACATCCAAGCAAATAAAAGTTTCTATTGGAC

mRNA sequence

ATGCTTCTGGAATCAAGTGGCTTGGAGTGGTTTGACAGCATAGTGGACAAAGTTATATCGAAGTTTCGGTTTCATAATGAAGAGAATGTTCTTCACGTCTATGGCGATCAAAACATTATGGAAGCCTTTCATTTACTATGGGAGAAACAAATGGGTGCAGTTGCTGTAACAGATAGGGAAAGTAAGAGCCTCATTGGTTGTTTGAGGAACAGCGACACATATCTTCTATTGGAGAAGGAAGATCTATTTCATAATAGAAAGAGGCTAACAGTGAAGGAGTTCATGCATATGGAATCGAGTAAAGAACAAGCAGACTCTAACCCAACAGTCAAAGGGGGCCAGAGGGCACTTACCTTGTCGAGCGCTCGTCCTCTAGTTAAGTGCAAAGTTCCAAATATGCACACTCCAGTCACCATCAGGAGAGATGACACTCTGAAGCAAGTGATGAAAACTATGGCAGAAACAAATAGCAGTTTCAGCTTTCTTGTCAATAGTTCCCACCAAGCAACAGGGATACTCACCGTGGGAGACGTAATAACTCAGTTTGCTCCGCCCTGTATGGATTCAACCATTCAAGGAGGCGGTTTTTTTGAATCTGCTCTGGAACATACTGGCTGTCAGATTAGAAATGGAACCTTAATTTGTAACAAAAGATCTTAGATAATGAGCTGAGTTTAACCATCTGAGGAAAATAATGTACCAGAGAAGAGGTGGGGTTGTTCATCTGCATGGTTTCCATTACCTGATTGGTCAAGACTCCACAAATTTCCATCCTATATTGATATTGACAGCTTCGGACTACTGAATGTTGTTCCTCTAACCACTTCAACCATATAATGGTTGTATGTTAGTTTTCTTCCTGGAAAAAGTGAGAAACGCTAAAATCATGTGCAAAAAGTGGTAGCATATATTGAGAAAGAACCACGCAGAATACAAAATCATTCAAAATTATAGAATTGTATACAGGCTCGTTGCTCGTTTCTTTACTGTAAATGGGTGGATGCTCACGTTTGCCTTCAGCCCCAGGAGATACATCGTGAATAATCGAGCACAAAACCATATAAAGGAACCATTCTTCCATTCAGGCAGTGGTGGCAACTGTAACGAGCTTATCCAGAAGCTTAATTTAGCTCTCTAGCAGTTCAAACTACTTGGGTCTGAGTTGATGATGGCCAGGAGTTCGATAGAAATAACTCCATTTCAAGATATCAGTAGTGTCGAAACTTAAGAGGGTTGTCAAATACCCTCGGTATTCCAGACCAGTGAAGATCCTCTTCTGATGAACTCACATGGCTGAAGCCCAGTCACTGTCTTGCCCATCAATGCCATAGCAGCTATACTGGGCATTGGCTTATTTAAAATTGGCCTAGAACATTGTGATTTGTGAACCACAGCAGTTTCAAGATTTCGTTCAGAAGATGTTGATCTATTATGACATAATCTTCGAATCCAGGGACTGGAGAGTATCATTTCTCGATTTTTTAATCTCAAGTTGCTGCACAAGTCACTAGCTTTTACTATAGTAGCCGTTTGGCCAACCGCCAATTGCTCTTGTCCATGGAGTGGACCCCTAGAGCGATCAGAGCTGGTTGAGCTGCGTTTCATTTTATTGAAGAGCTGATTGGCTTTATCACAGGAAGACTCTTCCACCTTTTTCGTGCTCTTTGAGTCATGAACAGACTCTGAAGCGCATGGCCTAAGACGTTTAACCCACCCACTGTCTATCTCCCGTTTAGAAGAGTCATCTGGAGGGACAATGGAATTCAAAAACCTTTGCTGCTCAGCATTTGAAAGGAGGTGTTCTGCATCTAAAGTTTGTGTTTTAGAGGTACTTGACTCCCCGTTTTCCATCAGGCTTGTAGAAGTAGAACGATTGGGTGGCCTTTCGTTTATATTAAGTAATCTTTTCTTCGGCAGCGGACCTCCAATTTGCTTTCTAACCGAACCAGTTGCACTCACAGAGAGCAGTGGTGATTTTGAACTCCTCAACTCCTGCAAATCCCAGAGCCATTTTAGTTCAGTAAAAAACTTCGTAACAGTTGAAAATTCTTCGACATAATCCTCCAATACCATCAATTCCAACGGTAATTAACATGTACGAGGCTTGATGAGCTAACCATCCATTCTGCATTTGTATTTTGATGAACATCCAAGCAAATAAAAGTTTCTATTGGAC

Coding sequence (CDS)

ATGCTTCTGGAATCAAGTGGCTTGGAGTGGTTTGACAGCATAGTGGACAAAGTTATATCGAAGTTTCGGTTTCATAATGAAGAGAATGTTCTTCACGTCTATGGCGATCAAAACATTATGGAAGCCTTTCATTTACTATGGGAGAAACAAATGGGTGCAGTTGCTGTAACAGATAGGGAAAGTAAGAGCCTCATTGGTTGTTTGAGGAACAGCGACACATATCTTCTATTGGAGAAGGAAGATCTATTTCATAATAGAAAGAGGCTAACAGTGAAGGAGTTCATGCATATGGAATCGAGTAAAGAACAAGCAGACTCTAACCCAACAGTCAAAGGGGGCCAGAGGGCACTTACCTTGTCGAGCGCTCGTCCTCTAGTTAAGTGCAAAGTTCCAAATATGCACACTCCAGTCACCATCAGGAGAGATGACACTCTGAAGCAAGTGATGAAAACTATGGCAGAAACAAATAGCAGTTTCAGCTTTCTTGTCAATAGTTCCCACCAAGCAACAGGGATACTCACCGTGGGAGACGTAATAACTCAGTTTGCTCCGCCCTGTATGGATTCAACCATTCAAGGAGGCGGTTTTTTTGAATCTGCTCTGGAACATACTGGCTGTCAGATTAGAAATGGAACCTTAATTTGTAACAAAAGATCTTAG

Protein sequence

MLLESSGLEWFDSIVDKVISKFRFHNEENVLHVYGDQNIMEAFHLLWEKQMGAVAVTDRESKSLIGCLRNSDTYLLLEKEDLFHNRKRLTVKEFMHMESSKEQADSNPTVKGGQRALTLSSARPLVKCKVPNMHTPVTIRRDDTLKQVMKTMAETNSSFSFLVNSSHQATGILTVGDVITQFAPPCMDSTIQGGGFFESALEHTGCQIRNGTLICNKRS
Homology
[Close]
BLAST of CmaCh02G003890 vs. ExPASy Swiss-Prot
Match: Q8LBB2 (SNF1-related protein kinase regulatory subunit gamma-1 OS=Arabidopsis thaliana OX=3702 GN=KING1 PE=1 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 9.7e-09
Identity = 41/186 (22.04%), Postives = 87/186 (46.77%), Query Frame = 0 

Query: 1   MLLESSGLEWFDSIVDKVISK--FRFHNEENVLHVYGDQNIMEAFHLLWEKQMGAVAVTD 60
           ML E +GL WF+    K +S+      ++++++ +Y D+ +++AF L+  K++G + V +
Sbjct: 237 MLAECAGLLWFEDWGIKTLSEVGLPIMSKDHIIKIYEDEPVLQAFKLMRRKRIGGIPVIE 296

Query: 61  RESKSLIGCLRNSDTYLLLEKEDLFHNRKRLTVKEFMHMESSKEQADSNPTVKGGQRALT 120
           R S+  +G +   D   LL   +++H+ + +T K F+                       
Sbjct: 297 RNSEKPVGNISLRDVQFLLTAPEIYHDYRSITTKNFL----------------------- 356

Query: 121 LSSARPLVKC---KVPNMHTPVTIRRDDTLKQVMKTMAETNSSFSFLVNSSHQATGILTV 180
           +S    L KC     P M   +   ++ TLK+++  +        ++V+      G++T+
Sbjct: 357 VSVREHLEKCGDTSAPIMSGVIACTKNHTLKELILMLDAEKIHRIYVVDDFGNLEGLITL 399

Query: 181 GDVITQ 182
            D+I +
Sbjct: 417 RDIIAR 399

[Close]
BLAST of CmaCh02G003890 vs. TAIR 10
Match: AT3G48530.1 (SNF1-related protein kinase regulatory subunit gamma 1 )

HSP 1 Score: 62.0 bits (149), Expect = 6.9e-10
Identity = 41/186 (22.04%), Postives = 87/186 (46.77%), Query Frame = 0 

Query: 1   MLLESSGLEWFDSIVDKVISK--FRFHNEENVLHVYGDQNIMEAFHLLWEKQMGAVAVTD 60
           ML E +GL WF+    K +S+      ++++++ +Y D+ +++AF L+  K++G + V +
Sbjct: 237 MLAECAGLLWFEDWGIKTLSEVGLPIMSKDHIIKIYEDEPVLQAFKLMRRKRIGGIPVIE 296

Query: 61  RESKSLIGCLRNSDTYLLLEKEDLFHNRKRLTVKEFMHMESSKEQADSNPTVKGGQRALT 120
           R S+  +G +   D   LL   +++H+ + +T K F+                       
Sbjct: 297 RNSEKPVGNISLRDVQFLLTAPEIYHDYRSITTKNFL----------------------- 356

Query: 121 LSSARPLVKC---KVPNMHTPVTIRRDDTLKQVMKTMAETNSSFSFLVNSSHQATGILTV 180
           +S    L KC     P M   +   ++ TLK+++  +        ++V+      G++T+
Sbjct: 357 VSVREHLEKCGDTSAPIMSGVIACTKNHTLKELILMLDAEKIHRIYVVDDFGNLEGLITL 399

Query: 181 GDVITQ 182
            D+I +
Sbjct: 417 RDIIAR 399

The following BLAST results are available for this feature:
BLAST of CmaCh02G003890 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LBB29.7e-0922.04SNF1-related protein kinase regulatory subunit gamma-1 OS=Arabidopsis thaliana O... [more]
BLAST of CmaCh02G003890 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G48530.16.9e-1022.04SNF1-related protein kinase regulatory subunit gamma 1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000644CBS domainPFAMPF00571CBScoord: 133..179
e-value: 4.3E-6
score: 27.1
IPR000644CBS domainPROSITEPS51371CBScoord: 132..189
score: 9.778477
NoneNo IPR availableGENE3D3.10.580.10coord: 12..183
e-value: 4.1E-16
score: 61.1
NoneNo IPR availablePANTHERPTHR13780AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNITcoord: 1..217
NoneNo IPR availablePANTHERPTHR13780:SF124OS01G0633400 PROTEINcoord: 1..217
NoneNo IPR availableCDDcd02205CBS_pair_SFcoord: 28..179
e-value: 2.0806E-6
score: 43.3872
NoneNo IPR availableSUPERFAMILY54631CBS-domain paircoord: 29..186

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G003890.1CmaCh02G003890.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity