CmaCh02G003720 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G003720
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionTransducin/WD40 repeat-like superfamily protein
LocationCma_Chr02: 1867230 .. 1874048 (+)
RNA-Seq ExpressionCmaCh02G003720
SyntenyCmaCh02G003720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAAAAAAAAAACAATACAGTCAAACCTGTCAACGCCATTGACGACAATTCCATTTCATGAGAAAGGGTTGCCGCTGCTGGAACACACCGACGGAGCTCCGATCATGTCGTGAAATGAAATCCAGTGTACAGATATAAATAATTTGAGTATTCATCGGGCACGGTCTGGATGTACCACCATTAGCCGTCCGGTCATCGGGGGGGAATTGAGGAACCTAGCTGTTTGATCTTCGATGGCTGACTCGTAAAAAAAATGTTAACGACTATGGTGGAATTCTAGATCAACGAAAGAAGGAGAGGATGAGAAACAGAAGAAATCTGGCTGTGGTTTCGGAACCAACCTGTGAAGCATTCATCGTCTCTTGCTCTATCGGAAGGCTGAAGCCGGGATTCGTCGTCGTAAAGTAAGCCTTGGTCTGTATATTCTTTCTGCATCTGTTTCTCTTTGATTGGGTTTTGAGTTGATTGTGATGAAATCTGGATGTTAGGGAGCATTATTTAAGTAGAATTGGGAGGGCAATGCGTTCTGAGTTACATTTAGGGTTGCGAGGTTCTTGTTTCCCCTTCGTAATCACGATTGCTGATAATCCCTTTCACTTCATATGGCTAAACCAATCTTAGGAGCACGGTGTTAGAGATTTTGAGTGATCCTACGTCGGTCGGAAAAGGGAACGAAACAATTTTTTATAAGGACGTGGAAATCCCTCCCTAGCATTTGCGTTTTAAAAAAAACCTTGAAAGGAACATCGGAAGGGAAAGCCGAAAGAGGACAATACCTGCTAGCAGTGGGTTTCGGCTGTTACAAATGGTATTAGAGCTAGACACCAAACAGTGTGCCAGCGAGGATGCAGAGTCCCAAAGGGGGTGGACACTAGAGCCCAAAGAAGGTGGATTGTAAGATCACATATTGGTTGGACAGGGGATCGGACGTTGTTTACCAGGGTGTGGAAACTACTCCCTAACATATGCGTTTTAAAAACCTTGAGGGGAAACCCGAAAAAGAAAGCCCAAAAAAGGCAATATCTAATAGCGTTATTCTTGGGCGGTTTGATTCTTAAGTATTTTGAAGGGGAAGTTGGGTTAGATACTAGCACATATCTAGAACTAAACCTTTCTCGGAAAAAAAAAAACGTTTGTGTTATAAGCTGGGAAATAAAGTTCTCTTAGGTTACAGAGACCAAAATTAACGAAAGCCAAAAGTACAATACCAAAATAGTATTTAACCTTCAGAATCCAAAGACTCATACAAATTTCATACTATACTAATCTTCTCTGTTTGTTTGACAACATCCATTGATGTCTGTAATACAATTGGATTTTGTTATGAACTGAAGTTGCAGGAAATGAGGATTCGAATGTCTACTTCTACGACTACGAGTTCTATGATTCGACACGAGCTAAACATACTTGTGCAAACTAGCTACAGATTCTCTCTAAGGTAAAACCATTAGTTGACAGTTTGTTGTCGATTGACCGGCACATATGTGCCTCTGCAGGGCCACTGGTTTCCGGTCACCGGGGTTGCCTGCAACCATGGGGAGAATCTGTTGGCTTCCTTCGATGTTTATGGGAGGGTAATTGTATGAGATCAAAGATGAGCTAGAACTTAGAATGATATATGTGGGAATAGATTTTCTAAATAGCTCTGTTGGCTTCCTTTTATCAACTTCAGATCATCATTCAGTACGAAAATCGATTGACAAAGAAAAAACTGGAGTTTGAAATGGAATATGAAAGTTCATGATGAATTCAACTAAGATTTGTCACTGCTTCATGAAATCAACTAGAAAAACTCAGGCGAAGTTTTTATTCATATTTACCAAGTGATATAGGTCATCACTAGCAAGCAGAAGAAAATGAAAACTCCTAACAAAATCTAAACCAACCTACTGTATCTTCCAAGGACAAAAAAGCTTGAAATCTGTTGATATGATATGCTTTCCTAACTAAAATAAAGATTAAATATTTGCATCCAATTCTACTCTACCTTGTTTGATATGTACTCAAGAGCCATAAATCTATCTAATTTACGTGTTCTATGTAGTTACCCGACGTTGACAGACAACTTCAGCAGATAGTTTTTTGCTTAGATTTGGACATGGATCGCCTCCGAAAATGCTCGTTGGTACGGTTGCCAGGCATCTCTGTCGACCAACACATAGCTGGAAAAGACGGTATAAATTAGGAACTTAGAATTGTAGTTTGAAGTTTTGATCTTCTCGATTACAGATCAATCATCAAGACAATATTTGAAAAGGTTGGTTATATATGGGTGTAAATTCAGATACCTTTTGCAACACGGATTGTGAATTTGGAAAATGACAGGTTCCCTGCTGAAGATTTCCACAAGCTCCACTTGGAGTTCCAAAGCTGACAAATTTGATAGCTGAAATGAACTGCCTAGCTGCACAATGCAGGTTGATCTTAACCACATTCTGCTCATTCAATCTTCCATGGTTCTGATGAGTGTTTTTGATAACAGGGCGATACTCGGATGCCTCGGTACAAATGCTTGTAATTGATCTCTTTACAAGAGTGATCCCTGAAGGATTCCCGCCCATCTCCTCAAAAACCACAATTAAATTTCTTGATGGCATCAACCAAGATCGAGGAATGTGGTACCTAAATGATAAACATATCAAATAAAATGCAGAATTTAGTGTTCGTCCTATGTCCAATGTTTAGCATCTGTAAATGTAGATGTAAAGAACTTGCCATTGTTGAGTCGGATGACCACACCCAGATTGGCATTTGTTTGGGCGGTATGTACCCGAGTAGCTGCAATCAGTGCAGTTTCCTTTGGCATGGACAGTCCAGTATCTTCCAATATTCTTCCCATTTATCCATACTTGACCCTTCTGCATACTACTCATGTCTAAAGCCAAAGGTTCGTCTCCTTCGGGCGCATTGAAATAAGCCTGCAAGTTGAAGCAAAATAGTGTCAACAATGGTTCTCCAATCTGAACGATGATGAGAGTTATAGACTATGTAGAAGAATGAAGAATTCTAGTTCTTTAGAACCATTGTAGTCAAGCTTCAACCATGTACCTTATACCAAGTAAGCGGCTGTGTGTTTTCTTGTACCGATGAATCCCATACCCAATCAACTGCTGGAATAGTGCTTAGAGAACCCAAGTTCATGGCTTCTCCTTCCAGACCAACCTGTCAAACAGGAAAAACATAAGGAAACTAGTGGAGTGCATAGAAAAACTGAGAAATGTGGTTGCATTTGCAGACCTTATATGACCATGTCTGTCTAGATAAGTCCATCGTTCCCTTGTCCAGCCCATGTATAGCAACTGGTCCAAGCACTCCCATTTCTCTCATCTCAAAATGAGGACCGTTGTTCTTCATCCACCAACAAGGAAAAGAACATCAAACAAAGATAAACCAGAGTTCTGACAAACTTCGTTTAGATTAAGATTTTTCATTTTCGTGAGATTAGAGCCCTAAGTATAACATTCTTAGCAACCATGAGAAGAGAGTTGCATAAAGAAGATGGACTGTTTGTTTCAAGTCTGATTTCAGAATTCTGATCAGGTAATTTACTTTTAGGAAATGATTAGTGAATCATAGTTCATATGATCAGGGACTAGAAAACTAACTGGCAATCCAGCAGCCATGCTTAACAGAGAAACTCTGTTTACTCCAGCTTGCAACTGAATTCTTCCCGTGAACTTAAATTTACTGCTGTCATGGTTCCCGAAGCTCGATCCTGCGTTGAGGAAAGGTATTGCCTAATCAGAATGAGCTCGGTAGAAAGGCATACACAGAAACATAGAAGTTGAGGTAAGAGATTCGATGATTCACCAGTTAGCTTTCCATTAATGAATACATGCATGCCATGACCAGTTGATCCCGCAACGAGAGTAGGAAGCCTCCCTCCACGCAGGAAGGATTCGTTTGAATCTACCTTGACACTGGAAAAATCCAGGTAATAAATATGTTTTCATTATGTAATCGTTCTCTATGTTATATATATAATCTAAGCACCATTTTTACCTGGTTGTATACCAAAGATAGTCGGTGGTGTCTCTAGTGATGTTTAGTTGCTCCAAAAGACCACCATATGACATCAATGGACCATCTTCAATCGAAGATATGTCTTCATTAAAAGTCTCCCACAAAAACGGTTCAACATTCGTCGGTGAAAATGACATCTGGTTTATTTGAACTTCAACCTGGAGCATGAAGAATTAGGATTTACCTTGGTATGTACAATTAGATTGCATGACTGATTTGGAAGATAATCTGAGTGATATAAACGAAGGCATCTATATGTAATATAAACTTCAAGAAAGATATGAAAAAAATGAAGTTGGCATATTATGCTTCTTAAGCCATGAGTTTTTTTCTTTACATTTCTCATGTTTAGATTTAGATTTACATGTTAGGGTCATTCAAGTAGTCTTGACCAAGCTATCTTGTCTAGAAACGAATTTTCTTTATTCTTGATCTTGATCATTGAGGTAATCCGTTTCTAAACTTTCCTTAGTTGATTCCTTATCATTCTATTTTTCTTATTCTTCGACAAGATTATTAGATCAAATTCCAAAGGTTTTATAATACCAAGTGTATAAAATATGTTGGCTTCTGTTGAACGATAAGGAGGAGGCAGTTAAACTATGGCTTCGTTTTACTTACTTGGGCAGTATTATATATGACACTCTTGCAATCAGGAAGAATACTAATCGACCAGGGTGGAAGAATGTAATGTCTGCCATTGAATGTCACCCTTGCAGATGAAGTCCAATGATAGTTCGATAGAAAAGCGGCGCAATCTCCTGAGCTAGAAGAGAATACCTTTGCCTGAAACATGTCAAGATTCAGTCAATGGCATTACATAGATGAACTTGTTCATCTAGACCAACAATCTAAGCATAGAGAAAGACAGCAAACCTTTTGATAAGTTCCCAAGGTTATGTTAGAAGGTTCACCAGTAAGAAAAGTCTTTTCACATAACTTAACGGCGTCATGGAGTCGTTTTAAGTGACCGAACTTCGGTTGCCTGATCAAGCCTATAATACAATCAAGGTGAATAACAACTCTACATTTTAGGAGGATGGAAAATTTCAAAAGATAACATCTGTATGTTGCTCACCATATTCATCAATGGGAGCATCATAGTCATAGCTAGTAGTAATGAAAGGACCCCCAGCAGTTCTTCCAAAGTTAGTTCCACCATGAAACTGGAAGGATTGTAGAACACATGAGAATTTTTGAATATGCAACGAATCAGAGCGACTGACACGTGAACTCTACTGTAGTCCTAAACTATTGGTAGACAGAGACATATAGGCAAGATAACTGAGCCATTTAGCAAAGGGACTTTAAGGTTAACCATATAATAATTGACGAAGGAGCCTCCTTTTTGGATGAACCTTGCAACTGCAAATGCCAAGTCTTCAACTGGGCGTTGATGAATTGGGCCACCAAACGTTGTAAACCTATATACAAAAGTAATGCAAAAACAAATAAACAAATAAATTTGGAGGCTGTTATGACAATTATGATACTTTCTAAACTAGAAAATAGTATGTTCTTATGAAAGTTGAAAAAAATGACCAAAAACCAATTGAAAATGTGTATGTGTTTGTGTTTTTAGTTGTCTTTAGTGGTCTTCCTTTGTTTGTTCTTACACATAATTGCTCATATATGATGTAGAGCTTATGCAACCATTAAATTGAGAAAGTACGGTTAAGACTATGGTAAAAAGTACCATTAAGATTCAATGAAATTTTTTAGATATATGTAGATTGATTTATTGATGAAGGACCACATTTTTTAAGACTAAATTGTTACGTAACAAACGATTTTGTTTTCGATGAAATTCAACGACCAAATTGTTATAAACCAGAGCTCAAAGATTGTTATTTTTACAAAAATTTGAGGATGGAGTGTCGATTTTTAACCTAAAAACAAGTAACTTACCAAGCAGTCCATGCCTCGGTCCAAAAAGTGGGCTTGTAAGGCTTGTTTGGTGAGAAATAGTCACAATAGAATCCATTGCATGTGTTTATCTTGACAAAATATTAAGAAACAATATGAACATCCCAAACATTAGAAGAAATGAAATCATAATGGAAATATTTGCAGAATGAAATTCTAACCATTGGATCAGGAGCATCATCTTCCTTGCACATTACCCAAGGCACCCCTGTATCTGTTTCAACTGCCATTTTTGCAGCCCAATTCATGTAAGCTGAGCCAGCAGCTCCAAACTCCTTGCCTTCTGTTTCATACTCATTCTCTATCTGCAAAAAGGTTCTTTCAAGCCAACAAAAATAACTAACCAAACCCGATTCGAATCTTTAGAACTCGACGATACCGTTCGTACAACCTATAGAACATATTTTGTTCAAGTTTAGTAGTGATTCGTATGACAACTCAAGCCCACCGTTAGTAGATATTGTTCATTTTAGCCCGTTACGTGTCGCCGTCAGTGTCAGTCTCACAGTTTTGAAATGCTGTCTGTTAGGGAGAGATTTCACACCCTTATAATGAATGTTTTAACTGTTGCAATGTCTCACATCTCGTATTTGATTATATGGAATGTTTCCATTTTTAACCGATGTGGGATCTAGTTCGAAGTTTTGAGAGATAGAAAATGACCAAAAAAAAATTACCTGAGAAAGAATGATGGGACCTCCTTGTGACTGGAAAAGCTTTTCATCCTTCATCATTTGGACTATTTTTTGGGTGAATGTTGCCATTGCTAACTGCAGCATTTAGTAATAAATAAGCCCCATCTAATTACAATTTTTTCTCTTTTTGTGAAAAGTTTTTGTAATTTGTTTCTAAATATTTTAAGATGCTAA

mRNA sequence

AGAAAAAAAAAAACAATACAGTCAAACCTGTCAACGCCATTGACGACAATTCCATTTCATGAGAAAGGGTTGCCGCTGCTGGAACACACCGACGGAGCTCCGATCATGTCGTGAAATGAAATCCAGTGTACAGATATAAATAATTTGAGTATTCATCGGGCACGGTCTGGATGTACCACCATTAGCCGTCCGGTCATCGGGGGGGAATTGAGGAACCTAGCTGTTTGATCTTCGATGGCTGACTCGTAAAAAAAATGTTAACGACTATGGTGGAATTCTAGATCAACGAAAGAAGGAGAGGATGAGAAACAGAAGAAATCTGGCTGTGGTTTCGGAACCAACCTGTGAAGCATTCATCGTCTCTTGCTCTATCGGAAGGCTGAAGCCGGGATTCGTCGTCGTAAAAATTGGGAGGGCAATGCGTTCTGAGTTACATTTAGGGTTGCGAGTTTGTTGTCGATTGACCGGCACATATGTGCCTCTGCAGGGCCACTGGTTTCCGGTCACCGGGGTTGCCTGCAACCATGGGGAGAATCTGTTGGCTTCCTTCGATGTTTATGGGAGGTTACCCGACGTTGACAGACAACTTCAGCAGATAGTTTTTTGCTTAGATTTGGACATGGATCGCCTCCGAAAATGCTCGTTGGTACGGTTGCCAGGCATCTCTGTCGACCAACACATAGCTGGAAAAGACGGGCGATACTCGGATGCCTCGGTACAAATGCTTGTAATTGATCTCTTTACAAGAGTGATCCCTGAAGGATTCCCGCCCATCTCCTCAAAAACCACAATTAAATTTCTTGATGGCATCAACCAAGATCGAGGAATATGTAAAGAACTTGCCATTGTTGAGTCGGATGACCACACCCAGATTGGCATTTGTTTGGGCGGTATGTACCCGAGTAGCTGCAATCAGTGCAGTTTCCTTTGGCATGGACAGTCCAGTATCTTCCAATATTCTTCCCATTTATCCATACTTGACCCTTCTGCATACTACTCATGTCTAAAGCCAAAGAATTCTGATCAGAATGAAATTCTAACCATTGGATCAGGAGCATCATCTTCCTTGCACATTACCCAAGGCACCCCTGTATCTGTTTCAACTGCCATTTTTGCAGCCCAATTCATATGCTAA

Coding sequence (CDS)

ATGAGAAACAGAAGAAATCTGGCTGTGGTTTCGGAACCAACCTGTGAAGCATTCATCGTCTCTTGCTCTATCGGAAGGCTGAAGCCGGGATTCGTCGTCGTAAAAATTGGGAGGGCAATGCGTTCTGAGTTACATTTAGGGTTGCGAGTTTGTTGTCGATTGACCGGCACATATGTGCCTCTGCAGGGCCACTGGTTTCCGGTCACCGGGGTTGCCTGCAACCATGGGGAGAATCTGTTGGCTTCCTTCGATGTTTATGGGAGGTTACCCGACGTTGACAGACAACTTCAGCAGATAGTTTTTTGCTTAGATTTGGACATGGATCGCCTCCGAAAATGCTCGTTGGTACGGTTGCCAGGCATCTCTGTCGACCAACACATAGCTGGAAAAGACGGGCGATACTCGGATGCCTCGGTACAAATGCTTGTAATTGATCTCTTTACAAGAGTGATCCCTGAAGGATTCCCGCCCATCTCCTCAAAAACCACAATTAAATTTCTTGATGGCATCAACCAAGATCGAGGAATATGTAAAGAACTTGCCATTGTTGAGTCGGATGACCACACCCAGATTGGCATTTGTTTGGGCGGTATGTACCCGAGTAGCTGCAATCAGTGCAGTTTCCTTTGGCATGGACAGTCCAGTATCTTCCAATATTCTTCCCATTTATCCATACTTGACCCTTCTGCATACTACTCATGTCTAAAGCCAAAGAATTCTGATCAGAATGAAATTCTAACCATTGGATCAGGAGCATCATCTTCCTTGCACATTACCCAAGGCACCCCTGTATCTGTTTCAACTGCCATTTTTGCAGCCCAATTCATATGCTAA

Protein sequence

MRNRRNLAVVSEPTCEAFIVSCSIGRLKPGFVVVKIGRAMRSELHLGLRVCCRLTGTYVPLQGHWFPVTGVACNHGENLLASFDVYGRLPDVDRQLQQIVFCLDLDMDRLRKCSLVRLPGISVDQHIAGKDGRYSDASVQMLVIDLFTRVIPEGFPPISSKTTIKFLDGINQDRGICKELAIVESDDHTQIGICLGGMYPSSCNQCSFLWHGQSSIFQYSSHLSILDPSAYYSCLKPKNSDQNEILTIGSGASSSLHITQGTPVSVSTAIFAAQFIC
Homology
[Close]
BLAST of CmaCh02G003720 vs. TAIR 10
Match: AT2G16405.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 8.4e-05
Identity = 21/27 (77.78%), Postives = 21/27 (77.78%), Query Frame = 0 

Query: 61  LQGHWFPVTGVACNHGENLLASFDVYG 88
           LQGH FPV  VA NHGENLLAS D YG
Sbjct: 444 LQGHRFPVMCVAWNHGENLLASSDFYG 470

The following BLAST results are available for this feature:
BLAST of CmaCh02G003720 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh02G003720 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G16405.18.4e-0577.78Transducin/WD40 repeat-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G003720.1CmaCh02G003720.1mRNA