CmaCh02G003490 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G003490
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionauxin-responsive protein SAUR21-like
LocationCma_Chr02: 1694360 .. 1695046 (+)
RNA-Seq ExpressionCmaCh02G003490
SyntenyCmaCh02G003490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCCAATGACCGATAGTGTAAGCTTGCAGCAGCATGGACCCACTGTAAGTTGATCTACCACGACATGGCATTTGGTTTCGAAGTTTTCTCACCTGTTATTTTGGACTAGAACTGCACCTCATTGGAACAAATGGGGCTGCTCACTAGTTTGTTAGGGCACATGATGAGGTGCGTCTATTCATACCAAATAAGCAACCCATGTGAGCATTTATGAAGTAGGCCCTCTTAGAAACCAAGTTGATACTGTTTTCTTCTCACCACTTCCCCGTTCTGAATCCATAAATACAGATCAAATAAACTTCAATCTCCAACTCAAATTTCTTGCACATTTTCATTCAAGTACTACACTTTCCAACTTCTAGATCTGCATCGAGCGGAAAACCCTTCTAGACATGGGAATCAGACTACCTTCACTTCTTCTCAATGCCAAGCAAGCTGTCAAAATGCATACCGCTTATTCTAGAAACCTGTGTGGCATTCCCAAAGGCCATATTACAGTTTATGTGGGAGATATCGAAAGAAAAAGATTTGTAGTTCCAATAGCGTACTTAAACCATCCTTCTTTTTCTGCTTTGCTCAACTGTGCCGAAGAAGAATTTGGATTTAAACATCCAACTGGAGGTCTTACAATTCCTTGCAGAGAAGATGTGTTCATCAATCTCACATCTAGGCTGCAATCTTCA

mRNA sequence

ATGCAGCCAATGACCGATAGTGTAAGCTTGCAGCAGCATGGACCCACTATCTGCATCGAGCGGAAAACCCTTCTAGACATGGGAATCAGACTACCTTCACTTCTTCTCAATGCCAAGCAAGCTGTCAAAATGCATACCGCTTATTCTAGAAACCTGTGTGGCATTCCCAAAGGCCATATTACAGTTTATGTGGGAGATATCGAAAGAAAAAGATTTGTAGTTCCAATAGCGTACTTAAACCATCCTTCTTTTTCTGCTTTGCTCAACTGTGCCGAAGAAGAATTTGGATTTAAACATCCAACTGGAGGTCTTACAATTCCTTGCAGAGAAGATGTGTTCATCAATCTCACATCTAGGCTGCAATCTTCA

Coding sequence (CDS)

ATGCAGCCAATGACCGATAGTGTAAGCTTGCAGCAGCATGGACCCACTATCTGCATCGAGCGGAAAACCCTTCTAGACATGGGAATCAGACTACCTTCACTTCTTCTCAATGCCAAGCAAGCTGTCAAAATGCATACCGCTTATTCTAGAAACCTGTGTGGCATTCCCAAAGGCCATATTACAGTTTATGTGGGAGATATCGAAAGAAAAAGATTTGTAGTTCCAATAGCGTACTTAAACCATCCTTCTTTTTCTGCTTTGCTCAACTGTGCCGAAGAAGAATTTGGATTTAAACATCCAACTGGAGGTCTTACAATTCCTTGCAGAGAAGATGTGTTCATCAATCTCACATCTAGGCTGCAATCTTCA

Protein sequence

MQPMTDSVSLQQHGPTICIERKTLLDMGIRLPSLLLNAKQAVKMHTAYSRNLCGIPKGHITVYVGDIERKRFVVPIAYLNHPSFSALLNCAEEEFGFKHPTGGLTIPCREDVFINLTSRLQSS
Homology
BLAST of CmaCh02G003490 vs. ExPASy Swiss-Prot
Match: Q9FJF7 (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.9e-23
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 0

Query: 35  LLNAKQAVKMHTAYSRNLCGIPKGHITVYVGDIERKRFVVPIAYLNHPSFSALLNCAEEE 94
           LL AK+ +   TA    +   PKG + VYVG+ ++KR++VP++YLN PSF ALL+ +E+E
Sbjct: 7   LLGAKKILSRSTA---AVSAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDE 66

Query: 95  FGFKHPTGGLTIPCREDVFINLTSRLQ 122
           FGF HP GGLTIPC ED FIN+TSRLQ
Sbjct: 67  FGFDHPMGGLTIPCHEDTFINVTSRLQ 90

BLAST of CmaCh02G003490 vs. ExPASy Swiss-Prot
Match: Q9FK62 (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.6e-23
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 0

Query: 35  LLNAKQAVKMHTAYSRNLCGIPKGHITVYVGDIERKRFVVPIAYLNHPSFSALLNCAEEE 94
           LL AK+ +   T         PKG + VYVG+ ++KR++VP++YLN PSF ALL+ +EEE
Sbjct: 7   LLGAKKILSRSTGAG---SAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEE 66

Query: 95  FGFKHPTGGLTIPCREDVFINLTSRLQ 122
           FGF HP GGLTIPC ED FIN+TSRLQ
Sbjct: 67  FGFDHPMGGLTIPCPEDTFINVTSRLQ 90

BLAST of CmaCh02G003490 vs. ExPASy Swiss-Prot
Match: Q9FJG1 (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-22
Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 0

Query: 35  LLNAKQAVKMHTAYSRNLCGIPKGHITVYVGDIERKRFVVPIAYLNHPSFSALLNCAEEE 94
           LL AK+ +   TA        PKG + VYVG+ ++KR++VP++YL+ PSF ALL+ +EEE
Sbjct: 7   LLGAKKILSRSTAAG---SAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEE 66

Query: 95  FGFKHPTGGLTIPCREDVFINLTSRLQ 122
           FGF HP GGLTIPC ED FIN+TSRLQ
Sbjct: 67  FGFAHPMGGLTIPCPEDTFINVTSRLQ 90

BLAST of CmaCh02G003490 vs. ExPASy Swiss-Prot
Match: Q9FJG0 (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-22
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 0

Query: 35  LLNAKQAVKMHTAYSRNLCGIPKGHITVYVGDIERKRFVVPIAYLNHPSFSALLNCAEEE 94
           LL AK+ +   T  +      PKG + VYVG+ ++KR++VPI+YLN PSF ALL+ +EEE
Sbjct: 7   LLGAKKILSRSTTAA---SAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEE 66

Query: 95  FGFKHPTGGLTIPCREDVFINLTSRLQ 122
           FGF HP GGLTIPC ED FIN+TSR Q
Sbjct: 67  FGFDHPMGGLTIPCPEDTFINVTSRFQ 90

BLAST of CmaCh02G003490 vs. ExPASy Swiss-Prot
Match: Q9FJF9 (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana OX=3702 GN=SAUR21 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-22
Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 0

Query: 35  LLNAKQAVKMHTAYSRNLCGIPKGHITVYVGDIERKRFVVPIAYLNHPSFSALLNCAEEE 94
           LL AK+ +   TA        PKG + VYVG+ ++KR++VP++YL+ PSF ALL+ +EEE
Sbjct: 7   LLGAKKILSRSTA-----SAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEE 66

Query: 95  FGFKHPTGGLTIPCREDVFINLTSRLQ 122
           FGF HP GGLTIPC ED FIN+TSRLQ
Sbjct: 67  FGFDHPMGGLTIPCPEDTFINVTSRLQ 88

BLAST of CmaCh02G003490 vs. TAIR 10
Match: AT2G21210.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 114.4 bits (285), Expect = 6.5e-26
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 0

Query: 27  MGIRLPSLLLNAKQAVKMHTAYSRNLCGIPKGHITVYVGD-IERKRFVVPIAYLNHPSFS 86
           M IR+  +L ++KQ +K   ++S N   IPKGH+ VYVG+ ++++RFVVP+ YL+HP F 
Sbjct: 1   MAIRISRVLQSSKQLLK-SLSHSSNNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQ 60

Query: 87  ALLNCAEEEFGFKHPTGGLTIPCREDVFINLTSRLQSS 124
            LL  AEEEFGF HP GGLTIPC E +FI+L SRL +S
Sbjct: 61  KLLRKAEEEFGFDHPMGGLTIPCTEQIFIDLASRLSTS 97

BLAST of CmaCh02G003490 vs. TAIR 10
Match: AT4G34810.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-24
Identity = 55/105 (52.38%), Postives = 74/105 (70.48%), Query Frame = 0

Query: 27  MGIRLPSLLLNAKQAVKMHTAYSRNLCG------IPKGHITVYVG---DIERKRFVVPIA 86
           MG+   ++    KQ +K+++  +RN         +PKGH+ VYVG   ++E+KRFVVPI+
Sbjct: 1   MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPIS 60

Query: 87  YLNHPSFSALLNCAEEEFGFKHPTGGLTIPCREDVFINL-TSRLQ 122
           +LNHPSF   L+ AEEEFGF HP GGLTIPCRE+VF++L  SRLQ
Sbjct: 61  FLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIASRLQ 105

BLAST of CmaCh02G003490 vs. TAIR 10
Match: AT5G18050.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-24
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 0

Query: 35  LLNAKQAVKMHTAYSRNLCGIPKGHITVYVGDIERKRFVVPIAYLNHPSFSALLNCAEEE 94
           LL AK+ +   TA    +   PKG + VYVG+ ++KR++VP++YLN PSF ALL+ +E+E
Sbjct: 7   LLGAKKILSRSTA---AVSAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDE 66

Query: 95  FGFKHPTGGLTIPCREDVFINLTSRLQ 122
           FGF HP GGLTIPC ED FIN+TSRLQ
Sbjct: 67  FGFDHPMGGLTIPCHEDTFINVTSRLQ 90

BLAST of CmaCh02G003490 vs. TAIR 10
Match: AT4G38840.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 108.6 bits (270), Expect = 3.6e-24
Identity = 50/97 (51.55%), Postives = 70/97 (72.16%), Query Frame = 0

Query: 27  MGIRLPSLLLNAKQAVK----MHTAYSRNLCGIPKGHITVYVGDIERKRFVVPIAYLNHP 86
           M IR+P +L ++KQ ++    + ++ S +   +PKG++ VYVG+   KRFVVP++YL+ P
Sbjct: 1   MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query: 87  SFSALLNCAEEEFGFKHPTGGLTIPCREDVFINLTSR 120
           SF  LL  AEEEFGF HP GGLTIPC E++FI+L SR
Sbjct: 61  SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASR 97

BLAST of CmaCh02G003490 vs. TAIR 10
Match: AT5G18080.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 107.8 bits (268), Expect = 6.1e-24
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 0

Query: 35  LLNAKQAVKMHTAYSRNLCGIPKGHITVYVGDIERKRFVVPIAYLNHPSFSALLNCAEEE 94
           LL AK+ +   T         PKG + VYVG+ ++KR++VP++YLN PSF ALL+ +EEE
Sbjct: 7   LLGAKKILSRSTGAG---SAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEE 66

Query: 95  FGFKHPTGGLTIPCREDVFINLTSRLQ 122
           FGF HP GGLTIPC ED FIN+TSRLQ
Sbjct: 67  FGFDHPMGGLTIPCPEDTFINVTSRLQ 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FJF73.9e-2357.47Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 S... [more]
Q9FK628.6e-2357.47Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 S... [more]
Q9FJG11.5e-2257.47Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 S... [more]
Q9FJG01.5e-2257.47Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 S... [more]
Q9FJF91.5e-2257.47Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana OX=3702 GN=SAUR21 PE=2 S... [more]
Match NameE-valueIdentityDescription
AT2G21210.16.5e-2655.10SAUR-like auxin-responsive protein family [more]
AT4G34810.12.1e-2452.38SAUR-like auxin-responsive protein family [more]
AT5G18050.12.7e-2457.47SAUR-like auxin-responsive protein family [more]
AT4G38840.13.6e-2451.55SAUR-like auxin-responsive protein family [more]
AT5G18080.16.1e-2457.47SAUR-like auxin-responsive protein family [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 43..119
e-value: 1.8E-24
score: 85.7
NoneNo IPR availablePANTHERPTHR31929:SF121AUXIN-RESPONSIVE PROTEIN SAUR21-LIKEcoord: 27..122
NoneNo IPR availablePANTHERPTHR31929SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATEDcoord: 27..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G003490.1CmaCh02G003490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin