CmaCh02G003290 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G003290
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
Location	Cma_Chr02: 1617043 .. 1620855 (+)
RNA-Seq Expression	CmaCh02G003290
Synteny	CmaCh02G003290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGACATCTTATCCACAGTGTTTTGCATCGAAGATGCATCTGAATTCTGAAAGAACTACAGAGACGTCGTCAAACCGTTAGTCGCGACGGAACCTCGCCACTTTCACGAGGACCGGTGGATGTCTCCGGCAGCCATGGATCAACGACGCGACGCTCCAATTCCGAATCCAGTCACACCCTCCATTGAGCTTTCAGGGCACCCAAATCGCTCCCAATCCAGTTCCAGGTCTGTTCTAGAATCCGCCATTTCAAATTCCTTTTGTTTTTTCCCGTGTTTTGATTATCCGGTTGAGCACGGTTAGGAACTACGACATCTCAATGGTATAATATTGTCTAATTTGAGTATAAGCTCTGGGAGATAATATTCCCCTTAATTAGCCAACCTGGAACTATTTCTCTCAATAGTCCTCAACCATCCTCTCCTCAAACAAAGTACAATACTTAAAACCTCTCGTTGAGGCCTCCTCTAAAGCTCTCGAACAACCTCCCTTAATCGAGGCTCGACTCCTGAGTTCTCAAACAAATACACAATTTGTTCGACACCTGTGCTACCTTTGACTATACCTTTGAAGCTTACAACTTCTTTGTTCGATGCCTGATAATTTTATAGGCATAACTCTGGTACCATGTTAGGAACCACGACCTCCACAATGATATGATATTGTCCATTTTGAGCCTAAGCTCTTATGGTTTTGTTTTGGTTTTCCTGCGAGGTCTCATATCAATGGAAATAATATTTTTTACTTATAAACTCACGATTTTCCCCCCTAATTAACCAACGTGGAACTACTCCTCTCAATAATTTTCAACAATCCTCCCCTAGAACAAAGTACACCATAAAGTCTCCCCTTGAGGCCTCCTTATCTAGAACTCTCAAATACCCTCCCCTTAAGCGAGGCTCGACTTCTTCTCTGGAGCCCTCGAACAAATACACAATTGATTCGATACTTGTATCACCTTTGACTACACCTTCGAATTTTACGACTTCTTTGTTCGACACTTGAGGATTCTATTGACATGACTAAGTTAAGGGCATGGGTCTGATACCATTTTAGGAACCACGACCTCCACGATGATAATGATATCGTCTATTTTGAGCATAAGCTCTCATGGTTTTGCTTTTGGTTTTCTCAAAAGGCCTCGTAGCAATAGAGATAGTATTCCTTACTTATAAACCCATGATCTTCCCTTTAATTAACGAACGAACATAGGACTATTCCTCTCAATAATGACATGGTTCCTTAAATAACTATCGTTGAACTCTGTTTTCTATTGATATAAGAACATGAATTAGCAATAGCTTACTGGCTATGATATCAATTTTCTGTTTCCGCTGCCAAAGGTCTGAATGTGAATTGAAGGATTCTGCAGCTGCTAGAACAGTTCAGAAGGCTGACAGAGAGAAACTAAGAAGAGACCGATTGAATGAACAATTTGTTGAGCTTGGAAGTGTTTTAGGTGAAATCAAAACACTTCCATATGGTCCCACAATGCCTGTTTTTCTAATCCTACAATCATTTATACTTCTTGTCTCGATTTTCTTTGTTAACGCATCGTTTTTGCTTTCTTGTTCTTTTTTCGAGTTCAACGTGGACGTTTCATAGGGGGATATTGTTGGATTCATGTCATTTTCTGTAATAGCCCAAACCTACCGCTAACAGATATTATTCGTTTTGGTCCATTACATATCATTGTCAGTCTCATGGTTTTTAAAACGTGTATGCTAGGGAGAGGTTTCCACACCCTTATAAGGAACGTTTCGTTTCTCTCTCCAACCAACGTGGAATCTCAAAATCCACTCCCTTGGGGGCCAACGTCCTCGCCTCACATCGGTTGGAAAAGAGAACGAAACATTCCTTAAAAGAGTGTGAAAATCTCTCTCTAGCAGACGCGTTTTAAAACTATAAGACTGATGGCGATATGTAAGAGACCAAAGCGGACAATATTTGCTAGCGTGACCTTGAGCTATTACATTTTTCTTTCTCATTTATTTATTCTTAGTGTCACTGTCTGTGCAGTCGACTCGATTAGCGACACGGGTACATTGATATTATCGGTAACTCTGCAGATCCTGATAGGCCCAAAAATGACAAAGCAACCATTTTAATGGATACAATTCAGTTGCTGAAGGATTTGACATCTCAAGTAAACAAACTGAAAACTGAGTATGCAACATTAACAGAAGAATCGCGTGAGGTGATATAGATTTACTTGTATGGGCATATTCATATATATGAGATCCCACCTCGGTTGAGGAGGAGAACGAAACATTCCTTATAAAAGTGTGGAAACCTCTCTCCCTAACAGATGCATTTTAAAACTGTGAGGCTAACAACGATACGTAACGGACCAAAGCGGACAATATCTGCTAGCGGTAGACTTGGGCTATTACAATAGTATTAGAGCCCAACACCGAGTGGTGTGCCAGCAAGGATGCTGGCCCCCCAAGGGGGGTGAATTGTGAGATCCTACATCAGTTGGAAAGGAGAACGAAACATTTCTTATAAGGTGTAGAAACCTCTCCTTAACAGACATGTGTTAAAACTGTGAGGCTGACGACGATACGTAACAAGCCAAAGCGGACAATATCTGCTATCTGTGAGCTTGGGCTATTACAAATAGTATCAGAGCTAGACACCGAGTGGTGTGCCAACAAGGATGCTGGGCCCCCAAAGGGGATGGATTGTGAGATCCCACATCAGTTGGATCGGAGAACGGAACATTTCTTATAAGGGTGTGGAAACCTCTCCCTAACAGACACGTGTTAAAACCGTGAGGCTGACAACGCTACGTAACGAGCCAAAGCGGACAATAGCTACTAGTGGTGAGCTTGGACTGTTACAAATGGTATTAGAGCAAGGTATCAAACAGTGTACCAGTAAGGACGCTAGGCCCCCAAGAGGGGTGGATTGTGAGATCCCACATCGTTTGGAGAGAAAAACGAAACATTCCTTATAAGGGTGTGTAAACCTCTCCCTAATAGACACATGTTAAAACCATGAGGCTAACGGTGATACATAACAGGTCAAAGCAGACAATACTAGTGGTGGACTTAAACTGTTTCAAATGGTATCAGAGCCAGACACCGAACGATGTGCCAGCAAGGATGCTAGACCCCAAGAGGGGTGGATTGTGCGATCCCACATCGGTTGGAGAGGAGAACGAAACATTTCTTATAAGGGTGTAGAAACCTCTCCCTAACAGACGCGTGTTAAAATCGTGAAGCTGACCGCGATACGTAAGGGGCCAAAACGGACACTATCTGTCGTGGACTTGGGCTATTACACTAGACGATTATATTACTCCAAGTTGTTAATATTAGTTCATCATGCACTTTTATTCACTTGCAGCTAGCCCAGGAAAAGAATGATCTAAGAGAAGAGAAGGCCTCACTCAAATCTGATATTGAGAATCTTAATTCTCAGTATCAGCAAAGACTCATGGCTACTAACTCTATTGTCATGGCCCCTGCTCCCTTTCCATTTCCAATGCCTCCAGCGCCATTTCCTCTACATCCAACCTCGCAACCTTACATGTTCTTCGGAAATCAAAATCCTAGAGTGATAGCAAACCCATGTTCCCCGTTCGTCCAATACATAGCTCATAATTCCATGGCTGAGCAGCAGGCCTCCCGAAATGCACCGCCTTTCGTTCATCCAAGCAAGCATGATTCGTCGTTCGAACAATCGAACGACACGAACGGGAACGAAAATAATCCATCAGAAGTAGAACTAGAGGAGAGTTCTTCAAGTGAATGTTCTTTATCTCGTAGTTTAGAGGCTAATTCGTTTAGTAGCACGCTTAATGGATGA

mRNA sequence

CTCGACATCTTATCCACAGTGTTTTGCATCGAAGATGCATCTGAATTCTGAAAGAACTACAGAGACGTCGTCAAACCGTTAGTCGCGACGGAACCTCGCCACTTTCACGAGGACCGGTGGATGTCTCCGGCAGCCATGGATCAACGACGCGACGCTCCAATTCCGAATCCAGTCACACCCTCCATTGAGCTTTCAGGGCACCCAAATCGCTCCCAATCCAGTTCCAGGTCTGAATGTGAATTGAAGGATTCTGCAGCTGCTAGAACAGTTCAGAAGGCTGACAGAGAGAAACTAAGAAGAGACCGATTGAATGAACAATTTGTTGAGCTTGGAAGTGTTTTAGATCCTGATAGGCCCAAAAATGACAAAGCAACCATTTTAATGGATACAATTCAGTTGCTGAAGGATTTGACATCTCAAGTAAACAAACTGAAAACTGAGTATGCAACATTAACAGAAGAATCGCGTGAGCTAGCCCAGGAAAAGAATGATCTAAGAGAAGAGAAGGCCTCACTCAAATCTGATATTGAGAATCTTAATTCTCAGTATCAGCAAAGACTCATGGCTACTAACTCTATTGTCATGGCCCCTGCTCCCTTTCCATTTCCAATGCCTCCAGCGCCATTTCCTCTACATCCAACCTCGCAACCTTACATGTTCTTCGGAAATCAAAATCCTAGAGTGATAGCAAACCCATGTTCCCCGTTCGTCCAATACATAGCTCATAATTCCATGGCTGAGCAGCAGGCCTCCCGAAATGCACCGCCTTTCGTTCATCCAAGCAAGCATGATTCGTCGTTCGAACAATCGAACGACACGAACGGGAACGAAAATAATCCATCAGAAGTAGAACTAGAGGAGAGTTCTTCAAGTGAATGTTCTTTATCTCGTAGTTTAGAGGCTAATTCGTTTAGTAGCACGCTTAATGGATGA

Coding sequence (CDS)

ATGTCTCCGGCAGCCATGGATCAACGACGCGACGCTCCAATTCCGAATCCAGTCACACCCTCCATTGAGCTTTCAGGGCACCCAAATCGCTCCCAATCCAGTTCCAGGTCTGAATGTGAATTGAAGGATTCTGCAGCTGCTAGAACAGTTCAGAAGGCTGACAGAGAGAAACTAAGAAGAGACCGATTGAATGAACAATTTGTTGAGCTTGGAAGTGTTTTAGATCCTGATAGGCCCAAAAATGACAAAGCAACCATTTTAATGGATACAATTCAGTTGCTGAAGGATTTGACATCTCAAGTAAACAAACTGAAAACTGAGTATGCAACATTAACAGAAGAATCGCGTGAGCTAGCCCAGGAAAAGAATGATCTAAGAGAAGAGAAGGCCTCACTCAAATCTGATATTGAGAATCTTAATTCTCAGTATCAGCAAAGACTCATGGCTACTAACTCTATTGTCATGGCCCCTGCTCCCTTTCCATTTCCAATGCCTCCAGCGCCATTTCCTCTACATCCAACCTCGCAACCTTACATGTTCTTCGGAAATCAAAATCCTAGAGTGATAGCAAACCCATGTTCCCCGTTCGTCCAATACATAGCTCATAATTCCATGGCTGAGCAGCAGGCCTCCCGAAATGCACCGCCTTTCGTTCATCCAAGCAAGCATGATTCGTCGTTCGAACAATCGAACGACACGAACGGGAACGAAAATAATCCATCAGAAGTAGAACTAGAGGAGAGTTCTTCAAGTGAATGTTCTTTATCTCGTAGTTTAGAGGCTAATTCGTTTAGTAGCACGCTTAATGGATGA

Protein sequence

MSPAAMDQRRDAPIPNPVTPSIELSGHPNRSQSSSRSECELKDSAAARTVQKADREKLRRDRLNEQFVELGSVLDPDRPKNDKATILMDTIQLLKDLTSQVNKLKTEYATLTEESRELAQEKNDLREEKASLKSDIENLNSQYQQRLMATNSIVMAPAPFPFPMPPAPFPLHPTSQPYMFFGNQNPRVIANPCSPFVQYIAHNSMAEQQASRNAPPFVHPSKHDSSFEQSNDTNGNENNPSEVELEESSSSECSLSRSLEANSFSSTLNG

Homology

[Close]

BLAST of CmaCh02G003290 vs. ExPASy Swiss-Prot
Match: Q9LT23 (Transcription factor bHLH121 OS=Arabidopsis thaliana OX=3702 GN=BHLH121 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.4e-49
Identity = 139/301 (46.18%), Postives = 184/301 (61.13%), Query Frame = 0


Query: 20  PSIELSGHPNRSQSSSRSECELKDSAAARTVQKADREKLRRDRLNEQFVELGSVLDPDRP 79
           P + L+   + S S   +E E+ D  +AR  QKA REKLRR++LNE FVELG+VLDP+RP
Sbjct: 32  PCLLLAHRISPSPSILPAEEEVMD-VSARKSQKAGREKLRREKLNEHFVELGNVLDPERP 91

Query: 80  KNDKATILMDTIQLLKDLTSQVNKLKTEYATLTEESRELAQEKNDLREEKASLKSDIENL 139
           KNDKATIL DT+QLLK+LTS+VNKLK+EY  LT+ESREL QEKNDLREEK SLKSDIENL
Sbjct: 92  KNDKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENL 151

Query: 140 NSQYQQRLMA--------TNSIVMAPAP-FPFP----MPPAPFPLHPTSQPYMFFGNQNP 199
           N QYQQRL +         ++++MAP P FP+P    MPP   P+HP+   Y +FGNQNP
Sbjct: 152 NLQYQQRLRSMSPWGAAMDHTVMMAPPPSFPYPMPIAMPPGSIPMHPSMPSYTYFGNQNP 211

Query: 200 RVIANPCSPFVQYIAHNSMAEQQA--------SRNAPPFVHPSKHDSSFEQSNDTN---- 259
            +I  PC  ++ Y+  N++ EQQ+        +R+  P    S+ +S  E++ D+N    
Sbjct: 212 SMIPAPCPTYMPYMPPNTVVEQQSVHIPQNPGNRSREPRAKVSR-ESRSEKAEDSNEVAT 271

Query: 260 -------------------------GNENNPSEVELEESSSSECSLSRSLEANSFSSTLN 271
                                       NN + +E E S SS+CS S S+  +S SS++ 
Sbjct: 272 QLELKTPGSTSDKDTLQRPEKTKRCKRNNNNNSIE-ESSHSSKCSSSPSVRDHSSSSSVA 329

[Close]

BLAST of CmaCh02G003290 vs. ExPASy Swiss-Prot
Match: Q8W2F2 (Transcription factor bHLH11 OS=Arabidopsis thaliana OX=3702 GN=BHLH11 PE=2 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-24
Identity = 99/270 (36.67%), Postives = 144/270 (53.33%), Query Frame = 0


Query: 11  DAPIPNPVTPSIELSGHPNRSQSSSRSE--------CELKDSAAARTVQKADREKLRRDR 70
           D P+        + +   + S SSS  +         E+K  A     QKA+REKLRRD+
Sbjct: 2   DQPMKPKTCSESDFADDSSASSSSSSGQNLRGAEMVVEVKKEAVCS--QKAEREKLRRDK 61

Query: 71  LNEQFVELGSVLDPDRPKNDKATILMDTIQLLKDLTSQVNKLKTEYATLTEESRELAQEK 130
           L EQF+ELG+ LDP+RPK+DKA++L DTIQ+LKD+ +QV++LK EY TL++ESREL QEK
Sbjct: 62  LKEQFLELGNALDPNRPKSDKASVLTDTIQMLKDVMNQVDRLKAEYETLSQESRELIQEK 121

Query: 131 NDLREEKASLKSDIENLNSQYQQRLMATNSIVMAPAPFPFPMPPAPFPLHPTSQPYMFFG 190
           ++LREEKA+LKSDIE LN+QYQ R+       M P     P      P    +Q    F 
Sbjct: 122 SELREEKATLKSDIEILNAQYQHRIK-----TMVPW---VPHYSYHIPFVAITQGQSSFI 181

Query: 191 NQNPRVIANPCSPFVQYIAHNSMAEQQASRNAPPFVHPSKHDSSFEQSNDTNGNENNPS- 250
             +  V  NP +     +  +S +   AS      + P   D     ++   GN+     
Sbjct: 182 PYSASV--NPLTEQQASVQQHSSSSADASMKQDSKIKPLDLDLMMNSNHSGQGNDQKDDV 241

Query: 251 ----EVELEESSSSECSLSRSLEANSFSST 268
               E+++  SS ++  +S   +  S ++T
Sbjct: 242 RLKLELKIHASSLAQQDVSGKEKKVSLTTT 259

[Close]

BLAST of CmaCh02G003290 vs. ExPASy Swiss-Prot
Match: Q9FH37 (Transcription factor ILR3 OS=Arabidopsis thaliana OX=3702 GN=ILR3 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.0e-17
Identity = 70/185 (37.84%), Postives = 103/185 (55.68%), Query Frame = 0


Query: 33  SSSRSECELKDSAAARTVQKADREKLRRDRLNEQFVELGSVLDP-DRPKNDKATILMDTI 92
           S  R  CE    +++ T  KA REK RRDRLN++F+ELG++L+P + PK DKA IL+D +
Sbjct: 61  SKKRGRCE----SSSATSSKACREKQRRDRLNDKFMELGAILEPGNPPKTDKAAILVDAV 120

Query: 93  QLLKDLTSQVNKLKTEYATLTEESRELAQEKNDLREEKASLKSDIENLNSQYQQRLMATN 152
           +++  L  +  KLK   ++L ++ +EL  EKN+LR+EK  LK++ E L    +Q+L A N
Sbjct: 121 RMVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEKL----EQQLKAMN 180

Query: 153 SIVMAPAPFPFPMPPAPFPLHPTSQPYMFFGNQNPRVIANPCSPFVQYIAHNSMAEQQAS 212
               AP P  FP PP   P    S      GN+   +I+ P     Q++   S+   Q  
Sbjct: 181 ----APQPSFFPAPPM-MPTAFASAQGQAPGNKMVPIISYPGVAMWQFMPPASVDTSQDH 232

Query: 213 RNAPP 217
              PP
Sbjct: 241 VLRPP 232

[Close]

BLAST of CmaCh02G003290 vs. ExPASy Swiss-Prot
Match: Q10KL8 (Protein IRON-RELATED TRANSCRIPTION FACTOR 3 OS=Oryza sativa subsp. japonica OX=39947 GN=IRO3 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-16
Identity = 65/203 (32.02%), Postives = 103/203 (50.74%), Query Frame = 0


Query: 48  RTVQKADREKLRRDRLNEQFVELGSVLDPDRPKNDKATILMDTIQLLKDLTSQVNKLKTE 107
           R V K++REKL+R  LN+ F ELG++L+ DR  N KA IL DT ++L+DL SQV  L+ E
Sbjct: 37  RKVHKSEREKLKRGHLNDLFGELGNMLEADRQSNGKACILTDTTRILRDLLSQVKSLRQE 96

Query: 108 YATLTEESRELAQEKNDLREEKASLKSDIENLNSQYQQRLMATNSIVMAPAPFPFPMPPA 167
            +TL  ES  +  E+N+L++E  +L+S+I +L ++ + R   +          P P+PP+
Sbjct: 97  NSTLQNESNYVTMERNELQDENGALRSEISDLQNELRMRATGSPGWGHGATGSPLPVPPS 156

Query: 168 PFPLHPTSQPYMFFGNQNPRVIANPCSPFVQYIAHNSMAEQQASR--------NAPPFVH 227
           P  + P+ QP      Q   +  +   P  Q +   ++ E  A +         APP   
Sbjct: 157 PGTVFPSQQPM-----QPSPMTTSTVFPLQQPLPQPTVIEPSARQPLELKLFLEAPPAED 216

Query: 228 PSKHDSSFEQSNDTNGNENNPSE 243
           P   +     +N        P+E
Sbjct: 217 PEPSEDQEAPNNVARPQPRYPTE 234

[Close]

BLAST of CmaCh02G003290 vs. ExPASy Swiss-Prot
Match: Q69V10 (Transcription factor BHLH062 OS=Oryza sativa subsp. japonica OX=39947 GN=BHLH062 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.5e-15
Identity = 43/105 (40.95%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 43  DSAAARTVQKADREKLRRDRLNEQFVELGSVLDPDRPKNDKATILMDTIQLLKDLTSQVN 102
           D  A + + K++REKL+RD+ N+ F ELG++L+PDR  N KA +L +T ++LKDL SQV 
Sbjct: 31  DKKAPKRIHKSEREKLKRDKQNDLFNELGNLLEPDRQNNGKACVLGETTRILKDLLSQVE 90

Query: 103 KLKTEYATLTEESRELAQEKNDLREEKASLKSDIENLNSQYQQRL 148
            L+ E ++L  ES  +A E+N+L ++ + L+++I  L ++ + R+
Sbjct: 91  SLRKENSSLKNESHYVALERNELHDDNSMLRTEILELQNELRTRM 135

[Close]

BLAST of CmaCh02G003290 vs. TAIR 10
Match: AT3G19860.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 198.0 bits (502), Expect = 9.9e-51
Identity = 132/275 (48.00%), Postives = 172/275 (62.55%), Query Frame = 0


Query: 46  AARTVQKADREKLRRDRLNEQFVELGSVLDPDRPKNDKATILMDTIQLLKDLTSQVNKLK 105
           +AR  QKA REKLRR++LNE FVELG+VLDP+RPKNDKATIL DT+QLLK+LTS+VNKLK
Sbjct: 4   SARKSQKAGREKLRREKLNEHFVELGNVLDPERPKNDKATILTDTVQLLKELTSEVNKLK 63

Query: 106 TEYATLTEESRELAQEKNDLREEKASLKSDIENLNSQYQQRLMA--------TNSIVMAP 165
           +EY  LT+ESREL QEKNDLREEK SLKSDIENLN QYQQRL +         ++++MAP
Sbjct: 64  SEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMSPWGAAMDHTVMMAP 123

Query: 166 AP-FPFP----MPPAPFPLHPTSQPYMFFGNQNPRVIANPCSPFVQYIAHNSMAEQQA-- 225
            P FP+P    MPP   P+HP+   Y +FGNQNP +I  PC  ++ Y+  N++ EQQ+  
Sbjct: 124 PPSFPYPMPIAMPPGSIPMHPSMPSYTYFGNQNPSMIPAPCPTYMPYMPPNTVVEQQSVH 183

Query: 226 ------SRNAPPFVHPSKHDSSFEQSNDTN-----------------------------G 271
                 +R+  P    S+ +S  E++ D+N                              
Sbjct: 184 IPQNPGNRSREPRAKVSR-ESRSEKAEDSNEVATQLELKTPGSTSDKDTLQRPEKTKRCK 243

[Close]

BLAST of CmaCh02G003290 vs. TAIR 10
Match: AT3G19860.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 197.2 bits (500), Expect = 1.7e-50
Identity = 139/301 (46.18%), Postives = 184/301 (61.13%), Query Frame = 0


Query: 20  PSIELSGHPNRSQSSSRSECELKDSAAARTVQKADREKLRRDRLNEQFVELGSVLDPDRP 79
           P + L+   + S S   +E E+ D  +AR  QKA REKLRR++LNE FVELG+VLDP+RP
Sbjct: 32  PCLLLAHRISPSPSILPAEEEVMD-VSARKSQKAGREKLRREKLNEHFVELGNVLDPERP 91

Query: 80  KNDKATILMDTIQLLKDLTSQVNKLKTEYATLTEESRELAQEKNDLREEKASLKSDIENL 139
           KNDKATIL DT+QLLK+LTS+VNKLK+EY  LT+ESREL QEKNDLREEK SLKSDIENL
Sbjct: 92  KNDKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENL 151

Query: 140 NSQYQQRLMA--------TNSIVMAPAP-FPFP----MPPAPFPLHPTSQPYMFFGNQNP 199
           N QYQQRL +         ++++MAP P FP+P    MPP   P+HP+   Y +FGNQNP
Sbjct: 152 NLQYQQRLRSMSPWGAAMDHTVMMAPPPSFPYPMPIAMPPGSIPMHPSMPSYTYFGNQNP 211

Query: 200 RVIANPCSPFVQYIAHNSMAEQQA--------SRNAPPFVHPSKHDSSFEQSNDTN---- 259
            +I  PC  ++ Y+  N++ EQQ+        +R+  P    S+ +S  E++ D+N    
Sbjct: 212 SMIPAPCPTYMPYMPPNTVVEQQSVHIPQNPGNRSREPRAKVSR-ESRSEKAEDSNEVAT 271

Query: 260 -------------------------GNENNPSEVELEESSSSECSLSRSLEANSFSSTLN 271
                                       NN + +E E S SS+CS S S+  +S SS++ 
Sbjct: 272 QLELKTPGSTSDKDTLQRPEKTKRCKRNNNNNSIE-ESSHSSKCSSSPSVRDHSSSSSVA 329

[Close]

BLAST of CmaCh02G003290 vs. TAIR 10
Match: AT4G36060.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 118.2 bits (295), Expect = 9.9e-27
Identity = 90/222 (40.54%), Postives = 129/222 (58.11%), Query Frame = 0


Query: 51  QKADREKLRRDRLNEQFVELGSVLDPDRPKNDKATILMDTIQLLKDLTSQVNKLKTEYAT 110
           QKA+REKLRRD+L EQF+ELG+ LDP+RPK+DKA++L DTIQ+LKD+ +QV++LK EY T
Sbjct: 30  QKAEREKLRRDKLKEQFLELGNALDPNRPKSDKASVLTDTIQMLKDVMNQVDRLKAEYET 89

Query: 111 LTEESRELAQEKNDLREEKASLKSDIENLNSQYQQRLMATNSIVMAPAPFPFPMPPAPFP 170
           L++ESREL QEK++LREEKA+LKSDIE LN+QYQ R+       M P     P      P
Sbjct: 90  LSQESRELIQEKSELREEKATLKSDIEILNAQYQHRIK-----TMVPW---VPHYSYHIP 149

Query: 171 LHPTSQPYMFFGNQNPRVIANPCSPFVQYIAHNSMAEQQASRNAPPFVHPSKHDSSFEQS 230
               +Q    F   +  V  NP +     +  +S +   AS      + P   D     +
Sbjct: 150 FVAITQGQSSFIPYSASV--NPLTEQQASVQQHSSSSADASMKQDSKIKPLDLDLMMNSN 209

Query: 231 NDTNGNENNPS-----EVELEESSSSECSLSRSLEANSFSST 268
           +   GN+         E+++  SS ++  +S   +  S ++T
Sbjct: 210 HSGQGNDQKDDVRLKLELKIHASSLAQQDVSGKEKKVSLTTT 241

[Close]

BLAST of CmaCh02G003290 vs. TAIR 10
Match: AT4G36060.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-25
Identity = 99/270 (36.67%), Postives = 144/270 (53.33%), Query Frame = 0


Query: 11  DAPIPNPVTPSIELSGHPNRSQSSSRSE--------CELKDSAAARTVQKADREKLRRDR 70
           D P+        + +   + S SSS  +         E+K  A     QKA+REKLRRD+
Sbjct: 2   DQPMKPKTCSESDFADDSSASSSSSSGQNLRGAEMVVEVKKEAVCS--QKAEREKLRRDK 61

Query: 71  LNEQFVELGSVLDPDRPKNDKATILMDTIQLLKDLTSQVNKLKTEYATLTEESRELAQEK 130
           L EQF+ELG+ LDP+RPK+DKA++L DTIQ+LKD+ +QV++LK EY TL++ESREL QEK
Sbjct: 62  LKEQFLELGNALDPNRPKSDKASVLTDTIQMLKDVMNQVDRLKAEYETLSQESRELIQEK 121

Query: 131 NDLREEKASLKSDIENLNSQYQQRLMATNSIVMAPAPFPFPMPPAPFPLHPTSQPYMFFG 190
           ++LREEKA+LKSDIE LN+QYQ R+       M P     P      P    +Q    F 
Sbjct: 122 SELREEKATLKSDIEILNAQYQHRIK-----TMVPW---VPHYSYHIPFVAITQGQSSFI 181

Query: 191 NQNPRVIANPCSPFVQYIAHNSMAEQQASRNAPPFVHPSKHDSSFEQSNDTNGNENNPS- 250
             +  V  NP +     +  +S +   AS      + P   D     ++   GN+     
Sbjct: 182 PYSASV--NPLTEQQASVQQHSSSSADASMKQDSKIKPLDLDLMMNSNHSGQGNDQKDDV 241

Query: 251 ----EVELEESSSSECSLSRSLEANSFSST 268
               E+++  SS ++  +S   +  S ++T
Sbjct: 242 RLKLELKIHASSLAQQDVSGKEKKVSLTTT 259

[Close]

BLAST of CmaCh02G003290 vs. TAIR 10
Match: AT5G54680.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 4.9e-18
Identity = 70/185 (37.84%), Postives = 103/185 (55.68%), Query Frame = 0


Query: 33  SSSRSECELKDSAAARTVQKADREKLRRDRLNEQFVELGSVLDP-DRPKNDKATILMDTI 92
           S  R  CE    +++ T  KA REK RRDRLN++F+ELG++L+P + PK DKA IL+D +
Sbjct: 61  SKKRGRCE----SSSATSSKACREKQRRDRLNDKFMELGAILEPGNPPKTDKAAILVDAV 120

Query: 93  QLLKDLTSQVNKLKTEYATLTEESRELAQEKNDLREEKASLKSDIENLNSQYQQRLMATN 152
           +++  L  +  KLK   ++L ++ +EL  EKN+LR+EK  LK++ E L    +Q+L A N
Sbjct: 121 RMVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEKL----EQQLKAMN 180

Query: 153 SIVMAPAPFPFPMPPAPFPLHPTSQPYMFFGNQNPRVIANPCSPFVQYIAHNSMAEQQAS 212
               AP P  FP PP   P    S      GN+   +I+ P     Q++   S+   Q  
Sbjct: 181 ----APQPSFFPAPPM-MPTAFASAQGQAPGNKMVPIISYPGVAMWQFMPPASVDTSQDH 232

Query: 213 RNAPP 217
              PP
Sbjct: 241 VLRPP 232

The following BLAST results are available for this feature:

BLAST of CmaCh02G003290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LT23	2.4e-49	46.18	Transcription factor bHLH121 OS=Arabidopsis thaliana OX=3702 GN=BHLH121 PE=1 SV=...	[more]
Q8W2F2	2.0e-24	36.67	Transcription factor bHLH11 OS=Arabidopsis thaliana OX=3702 GN=BHLH11 PE=2 SV=2	[more]
Q9FH37	7.0e-17	37.84	Transcription factor ILR3 OS=Arabidopsis thaliana OX=3702 GN=ILR3 PE=1 SV=1	[more]
Q10KL8	2.0e-16	32.02	Protein IRON-RELATED TRANSCRIPTION FACTOR 3 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q69V10	6.5e-15	40.95	Transcription factor BHLH062 OS=Oryza sativa subsp. japonica OX=39947 GN=BHLH062...	[more]

BLAST of CmaCh02G003290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19860.1	9.9e-51	48.00	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G19860.2	1.7e-50	46.18	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G36060.2	9.9e-27	40.54	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G36060.1	1.4e-25	36.67	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G54680.1	4.9e-18	37.84	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 46..66
None	No IPR available	COILS	Coil	Coil	coord: 87..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..270
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..270
None	No IPR available	PANTHER	PTHR47001:SF3	TRANSCRIPTION FACTOR BHLH121	coord: 28..249
None	No IPR available	CDD	cd11446	bHLH_AtILR3_like	coord: 52..126 e-value: 3.47206E-34 score: 116.664
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 53..103 e-value: 2.8E-6 score: 36.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 51..97 e-value: 3.4E-8 score: 33.4
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 47..97 score: 12.855416
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 46..126 e-value: 2.7E-11 score: 45.4
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 47..115
IPR044579	Transcription factor bHLH11/121	PANTHER	PTHR47001	TRANSCRIPTION FACTOR BHLH121	coord: 28..249

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G003290.1	CmaCh02G003290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055072	iron ion homeostasis
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity