CmaCh02G002660 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G002660
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DUF1279 domain-containing protein
Location	Cma_Chr02: 1201977 .. 1202435 (+)
RNA-Seq Expression	CmaCh02G002660
Synteny	CmaCh02G002660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTCTTCACCGGTGGTGGCCGATTCCGCGAGCTTCTCAGGAAGTACGGGAAGGTCGCAATCGGAGTTCATTTCTCAGTGTCGGCGGCTTCAATCACTGGCCTCTATGTCGCCATCAAGAACAATGTCGATGTAGAATCGCTACTCGATAAGCTACACATGGACGGATTCTCTTCCAAAGATACGCCACAGACAAGTCCCTCTGAAATCACACCGTCTGTAGATGATGGATTTGTGATCGAAGAAAGACCTACATCGGGAATTCAATCAACCGTAGTGGAAGAGCCGAGGAAAAGGAATCGTACAGCCGAGCTCGCAGCGTCGACTGGCGGCGCGTTGGCTTTGGCCGTGCTTTGTAACAAGGCATTGTTGCCGATTCGGATCCCGATCACGATTGCGCTCACACCGCCGATCGCGAGGCTGCTGGCGAGGCGAGGAATTATGAGAAGTGGTTAA

mRNA sequence

ATGGCTTTCTTCACCGGTGGTGGCCGATTCCGCGAGCTTCTCAGGAAGTACGGGAAGGTCGCAATCGGAGTTCATTTCTCAGTGTCGGCGGCTTCAATCACTGGCCTCTATGTCGCCATCAAGAACAATGTCGATGTAGAATCGCTACTCGATAAGCTACACATGGACGGATTCTCTTCCAAAGATACGCCACAGACAAGTCCCTCTGAAATCACACCGTCTGTAGATGATGGATTTGTGATCGAAGAAAGACCTACATCGGGAATTCAATCAACCGTAGTGGAAGAGCCGAGGAAAAGGAATCGTACAGCCGAGCTCGCAGCGTCGACTGGCGGCGCGTTGGCTTTGGCCGTGCTTTGTAACAAGGCATTGTTGCCGATTCGGATCCCGATCACGATTGCGCTCACACCGCCGATCGCGAGGCTGCTGGCGAGGCGAGGAATTATGAGAAGTGGTTAA

Coding sequence (CDS)

ATGGCTTTCTTCACCGGTGGTGGCCGATTCCGCGAGCTTCTCAGGAAGTACGGGAAGGTCGCAATCGGAGTTCATTTCTCAGTGTCGGCGGCTTCAATCACTGGCCTCTATGTCGCCATCAAGAACAATGTCGATGTAGAATCGCTACTCGATAAGCTACACATGGACGGATTCTCTTCCAAAGATACGCCACAGACAAGTCCCTCTGAAATCACACCGTCTGTAGATGATGGATTTGTGATCGAAGAAAGACCTACATCGGGAATTCAATCAACCGTAGTGGAAGAGCCGAGGAAAAGGAATCGTACAGCCGAGCTCGCAGCGTCGACTGGCGGCGCGTTGGCTTTGGCCGTGCTTTGTAACAAGGCATTGTTGCCGATTCGGATCCCGATCACGATTGCGCTCACACCGCCGATCGCGAGGCTGCTGGCGAGGCGAGGAATTATGAGAAGTGGTTAA

Protein sequence

MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSSKDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLCNKALLPIRIPITIALTPPIARLLARRGIMRSG

Homology

[Close]

BLAST of CmaCh02G002660 vs. ExPASy TrEMBL
Match: A0A6J1I2F7 (uncharacterized protein LOC111469888 OS=Cucurbita maxima OX=3661 GN=LOC111469888 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120
           KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 153
           NKALLPIRIPITIALTPPIARLLARRGIMRSG
Sbjct: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of CmaCh02G002660 vs. ExPASy TrEMBL
Match: A0A6J1G6W3 (uncharacterized protein LOC111451320 OS=Cucurbita moschata OX=3662 GN=LOC111451320 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.0e-73
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120
           KDTPQTSPSEIT SVDDGFVIEERPTSGIQSTV+EEPRKRNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERPTSGIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 153
           NKALLPIR+PITIALTPPIARLLARRGIMRSG
Sbjct: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of CmaCh02G002660 vs. ExPASy TrEMBL
Match: A0A6J1CXM4 (uncharacterized protein LOC111015379 OS=Momordica charantia OX=3673 GN=LOC111015379 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.3e-67
Identity = 140/152 (92.11%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120
           KD PQT PSE T S DDGFVIEERP S  QST V+EPR+RNRTAELAASTGGALALAVLC
Sbjct: 61  KDQPQTIPSESTSSADDGFVIEERPVSENQSTAVQEPRRRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 153
           NKALLPIRIPITIALTPPI+RLLARRGIMRSG
Sbjct: 121 NKALLPIRIPITIALTPPISRLLARRGIMRSG 152

[Close]

BLAST of CmaCh02G002660 vs. ExPASy TrEMBL
Match: A0A6J1JD52 (uncharacterized protein LOC111483951 OS=Cucurbita maxima OX=3661 GN=LOC111483951 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.6e-64
Identity = 135/152 (88.82%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120
           KD  QTSP E   SVDDG VIEE P S  QSTV +EPR RNRTAELAASTGGALALAVLC
Sbjct: 61  KDQSQTSPGETASSVDDGLVIEESPASETQSTVAQEPRTRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 153
           NKALLPIRIPITI LTPPIAR+LARRGIMRSG
Sbjct: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 152

[Close]

BLAST of CmaCh02G002660 vs. ExPASy TrEMBL
Match: A0A6J1FU56 (uncharacterized protein LOC111448454 OS=Cucurbita moschata OX=3662 GN=LOC111448454 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 9.3e-62
Identity = 133/152 (87.50%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120
           KD  QTSP       DDG VIEE P S IQSTV +EPR RNRTAELAASTGGALALAVLC
Sbjct: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 153
           NKALLPIRIPITI LTPPIAR+LARRGIMRSG
Sbjct: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 145

[Close]

BLAST of CmaCh02G002660 vs. NCBI nr
Match: XP_022971121.1 (uncharacterized protein LOC111469888 [Cucurbita maxima])

HSP 1 Score: 288.5 bits (737), Expect = 3.4e-74
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120
           KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 153
           NKALLPIRIPITIALTPPIARLLARRGIMRSG
Sbjct: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of CmaCh02G002660 vs. NCBI nr
Match: XP_022947464.1 (uncharacterized protein LOC111451320 [Cucurbita moschata] >KAG7027024.1 hypothetical protein SDJN02_11032, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283.9 bits (725), Expect = 8.3e-73
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120
           KDTPQTSPSEIT SVDDGFVIEERPTSGIQSTV+EEPRKRNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERPTSGIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 153
           NKALLPIR+PITIALTPPIARLLARRGIMRSG
Sbjct: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of CmaCh02G002660 vs. NCBI nr
Match: KAG6604946.1 (hypothetical protein SDJN03_02263, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 281.6 bits (719), Expect = 4.1e-72
Identity = 148/152 (97.37%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNN+DVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNIDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120
           KDTPQTSPSEIT SVDDGFVIEERPTSGIQSTVVEEPR RNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERPTSGIQSTVVEEPRIRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 153
           NKALLPIR+PITIALTPPIARLLARRGIMRSG
Sbjct: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of CmaCh02G002660 vs. NCBI nr
Match: XP_023533856.1 (uncharacterized protein LOC111795580 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 279.6 bits (714), Expect = 1.6e-71
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLRKYGKVAIGVHFSVS+ASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSSASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120
           KDTPQTSPSEIT SVDDGFVIEERPTS IQSTV+EEPRKRNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERPTSEIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 153
           NKALLPIR+PITIALTPPIARLLARRGIMRSG
Sbjct: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of CmaCh02G002660 vs. NCBI nr
Match: XP_022146083.1 (uncharacterized protein LOC111015379 [Momordica charantia])

HSP 1 Score: 264.2 bits (674), Expect = 6.8e-67
Identity = 140/152 (92.11%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120
           KD PQT PSE T S DDGFVIEERP S  QST V+EPR+RNRTAELAASTGGALALAVLC
Sbjct: 61  KDQPQTIPSESTSSADDGFVIEERPVSENQSTAVQEPRRRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 153
           NKALLPIRIPITIALTPPI+RLLARRGIMRSG
Sbjct: 121 NKALLPIRIPITIALTPPISRLLARRGIMRSG 152

[Close]

BLAST of CmaCh02G002660 vs. TAIR 10
Match: AT2G20940.1 (Protein of unknown function (DUF1279) )

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-33
Identity = 81/144 (56.25%), Postives = 103/144 (71.53%), Query Frame = 0


Query: 9   RFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSSKDTPQTSP 68
           R +E+++KYGKVA+GVHFSVS  SI+G Y+AIKNNVDVESLL+K  +  FSSK+ P    
Sbjct: 4   RLKEIVKKYGKVALGVHFSVSGVSISGFYIAIKNNVDVESLLEKYQIPWFSSKENP---- 63

Query: 69  SEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLCNKALLPIR 128
               PS+D    +EE      Q +V  +    N+T +LA S GGALALAVLCNKAL PIR
Sbjct: 64  ---NPSLD--LKLEE------QGSVTSD----NKTKQLAKSAGGALALAVLCNKALFPIR 123

Query: 129 IPITIALTPPIARLLARRGIMRSG 153
           +PIT+ALTPPIAR L +R I+++G
Sbjct: 124 VPITMALTPPIARFLRQRKILKTG 128

The following BLAST results are available for this feature:

BLAST of CmaCh02G002660 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G002660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I2F7	1.6e-74	100.00	uncharacterized protein LOC111469888 OS=Cucurbita maxima OX=3661 GN=LOC111469888...	[more]
A0A6J1G6W3	4.0e-73	98.03	uncharacterized protein LOC111451320 OS=Cucurbita moschata OX=3662 GN=LOC1114513...	[more]
A0A6J1CXM4	3.3e-67	92.11	uncharacterized protein LOC111015379 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1JD52	2.6e-64	88.82	uncharacterized protein LOC111483951 OS=Cucurbita maxima OX=3661 GN=LOC111483951...	[more]
A0A6J1FU56	9.3e-62	87.50	uncharacterized protein LOC111448454 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]

BLAST of CmaCh02G002660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971121.1	3.4e-74	100.00	uncharacterized protein LOC111469888 [Cucurbita maxima]	[more]
XP_022947464.1	8.3e-73	98.03	uncharacterized protein LOC111451320 [Cucurbita moschata] >KAG7027024.1 hypothet...	[more]
KAG6604946.1	4.1e-72	97.37	hypothetical protein SDJN03_02263, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023533856.1	1.6e-71	96.71	uncharacterized protein LOC111795580 [Cucurbita pepo subsp. pepo]	[more]
XP_022146083.1	6.8e-67	92.11	uncharacterized protein LOC111015379 [Momordica charantia]	[more]

BLAST of CmaCh02G002660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20940.1	1.4e-33	56.25	Protein of unknown function (DUF1279)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009688	Protein FAM210A/B-like domain	PFAM	PF06916	DUF1279	coord: 9..137 e-value: 2.3E-26 score: 92.2
None	No IPR available	PANTHER	PTHR21377:SF0	PROTEIN FAM210B, MITOCHONDRIAL	coord: 8..150
None	No IPR available	PANTHER	PTHR21377	UNCHARACTERIZED	coord: 8..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G002660.1	CmaCh02G002660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion