CmaCh02G002340 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G002340
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	nuclear transcription factor Y subunit B-3-like
Location	Cma_Chr02: 1048906 .. 1049538 (+)
RNA-Seq Expression	CmaCh02G002340
Synteny	CmaCh02G002340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATTCGGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTATCGGCGAAGGAACAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTACCAGCAAACGCGAAGATCTCGAAAGATGCGAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCGCTCAAGTCATATCTGCAGAAGTACAGGGAAATGGAAGGAGAAAAGAGCACTATGGGGGGAGGAAAAGGGGAAAAAGACGGTGGTGGTGGTGGTGGTGGGCCCGGCGGAAGTGGGGCAAATGTTGGTGGTGGTGGTGGTGGTGGAGTCAACCCTGGTACTGGTGGTGGTGTTAGCGGCGGTGGATTCAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGTGCATCATCAGGGTGGTGTTTATGGCAGTGGTGGATTTCACCACATGGGAATCGGCGGCGGGAAGGGAGGAAATGGTGGTTCCGGCACCGGACACCGATAG

mRNA sequence

ATGGCGGATTCGGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTATCGGCGAAGGAACAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTACCAGCAAACGCGAAGATCTCGAAAGATGCGAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCGCTCAAGTCATATCTGCAGAAGTACAGGGAAATGGAAGGAGAAAAGAGCACTATGGGGGGAGGAAAAGGGGAAAAAGACGGTGGTGGTGGTGGTGGTGGGCCCGGCGGAAGTGGGGCAAATGTTGGTGGTGGTGGTGGTGGTGGAGTCAACCCTGGTACTGGTGGTGGTGTTAGCGGCGGTGGATTCAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGTGCATCATCAGGGTGGTGTTTATGGCAGTGGTGGATTTCACCACATGGGAATCGGCGGCGGGAAGGGAGGAAATGGTGGTTCCGGCACCGGACACCGATAG

Coding sequence (CDS)

ATGGCGGATTCGGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTATCGGCGAAGGAACAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTACCAGCAAACGCGAAGATCTCGAAAGATGCGAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCGCTCAAGTCATATCTGCAGAAGTACAGGGAAATGGAAGGAGAAAAGAGCACTATGGGGGGAGGAAAAGGGGAAAAAGACGGTGGTGGTGGTGGTGGTGGGCCCGGCGGAAGTGGGGCAAATGTTGGTGGTGGTGGTGGTGGTGGAGTCAACCCTGGTACTGGTGGTGGTGTTAGCGGCGGTGGATTCAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGTGCATCATCAGGGTGGTGTTTATGGCAGTGGTGGATTTCACCACATGGGAATCGGCGGCGGGAAGGGAGGAAATGGTGGTTCCGGCACCGGACACCGATAG

Protein sequence

MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTMGGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMVHHQGGVYGSGGFHHMGIGGGKGGNGGSGTGHR

Homology

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BLAST of CmaCh02G002340 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 8.0e-53
Identity = 122/149 (81.88%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDN+SGGH    N+  S +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGHKDGGNA--STREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLK YLQKYRE+EGEK+T 
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 120

Query: 121 GGGKGEKDGGGGGGGPG-GSGANVGGGGG 149
            G +G+K+GGGGGGG G GSG     GGG
Sbjct: 121 AGRQGDKEGGGGGGGAGSGSGGAPMYGGG 147

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BLAST of CmaCh02G002340 vs. ExPASy Swiss-Prot
Match: Q69J40 (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.6e-43
Identity = 137/225 (60.89%), Postives = 154/225 (68.44%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           M DSDNESGG  SNA    SA+EQDRFLPIANVSRIMK+ALPANAKISKDAKETVQECVS
Sbjct: 1   MPDSDNESGG-PSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+Y++PLK YL K+RE+EGEK+  
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEKAIG 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGG-GVSGGGFNGVGGMYGGMMMMVH 180
             G     GGGG    GGSG+  G       +   GG G+ GGG        GGM+MM+ 
Sbjct: 121 AAG----SGGGGAASSGGSGSGSGSHHHQDASRNNGGYGMYGGG--------GGMIMMMG 180

Query: 181 HQGGVYG-----SGGF---------HHMGIGGGKG--GNGGSGTG 209
               +YG     S G+         HH  + GGKG  G+GG G G
Sbjct: 181 QP--MYGSPPASSAGYAQPPPPHHHHHQMVMGGKGAYGHGGGGGG 210

[Close]

BLAST of CmaCh02G002340 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 6.4e-42
Identity = 123/206 (59.71%), Postives = 141/206 (68.45%), Query Frame = 0


Query: 1   MADSDNESG----GHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60
           M DSD +SG    G+N N  S LS +EQDRFLPIANVSRIMKKALPANAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGE 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLK YLQ++RE+EGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KSTMGGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGM-YGGMM 180
           ++ +G  +              +G  VG      V  G GGG  GGG    GGM Y    
Sbjct: 121 RTGLGRPQ--------------TGGEVGEHQRDAV--GDGGGFYGGG----GGMQYHQHH 180

Query: 181 MMVHHQGGVYG-SGGFHHMGIGGGKG 201
             +H Q  +YG +GG    G G   G
Sbjct: 181 QFLHQQNHMYGATGGGSDSGGGAASG 186

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BLAST of CmaCh02G002340 vs. ExPASy Swiss-Prot
Match: Q75IZ7 (Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.0e-39
Identity = 128/218 (58.72%), Postives = 143/218 (65.60%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSA-KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60
           M DSDN+SGG ++ A  ELS+ +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV
Sbjct: 1   MPDSDNDSGGPSNYAGGELSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKST 120
           SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YV+PLK YL K+RE+EGE++ 
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGERAA 120

Query: 121 MGGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVG-GMYGG----- 180
                                AN  GG  G   PG G    GG    +G  MYG      
Sbjct: 121 ASTTGAGTSAASTTPPQQQHTANAAGGYAGYAAPGAG---PGGMMMMMGQPMYGSPPPPP 180

Query: 181 -MMMMVHHQGGVYGSGGFHHMGIGGGKGGNGGSGTGHR 211
                 HH   + G GGF H   GGG G +  SG G +
Sbjct: 181 QQQQQQHHHMAMGGRGGFGHHPGGGGGGSSSSSGHGRQ 215

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BLAST of CmaCh02G002340 vs. ExPASy Swiss-Prot
Match: Q0J7P4 (Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=39947 GN=HD5 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.2e-34
Identity = 124/233 (53.22%), Postives = 140/233 (60.09%), Query Frame = 0


Query: 11  HNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEA 70
           +      +  AKEQDRFLPIANVSRIMK++LPANAKISK++KETVQECVSEFISF+TGEA
Sbjct: 46  YGGGGGGDSPAKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEA 105

Query: 71  SDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTMGGGKG----E 130
           SDKCQREKRKTINGDDLLWAMTTLGFE YV PLKSYL +YRE EGEK+ + GG G     
Sbjct: 106 SDKCQREKRKTINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKADVLGGAGGAAAA 165

Query: 131 KDGGGGGGGPGGSGAN---------VGGG------------GGGGVNPGTGGGVSGGGFN 190
           + G GG  G GG GA+         + GG            GGG V    GGG +G G+N
Sbjct: 166 RHGEGGCCGGGGGGADGVVIDGHYPLAGGLSHSHHGHQQQDGGGDVGLMMGGGDAGVGYN 225

Query: 191 GVGG-----MYGGMMMMVHHQGGVYGSGGFHHM---GIGGGKGGNGGSGTGHR 211
              G      Y              G  G   M   GIGG +   GG G G R
Sbjct: 226 AGAGSTTTAFYAPAATAASGNKAYCGGDGSRVMEFEGIGGEEESGGGGGGGER 278

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BLAST of CmaCh02G002340 vs. ExPASy TrEMBL
Match: A0A6J1I2E0 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=LOC111469875 PE=3 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 4.1e-100
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMVHH 180
           GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMVHH
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMVHH 180

Query: 181 QGGVYGSGGFHHMGIGGGKGGNGGSGTGHR 211
           QGGVYGSGGFHHMGIGGGKGGNGGSGTGHR
Sbjct: 181 QGGVYGSGGFHHMGIGGGKGGNGGSGTGHR 210

[Close]

BLAST of CmaCh02G002340 vs. ExPASy TrEMBL
Match: A0A6J1G731 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN=LOC111451370 PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.2e-98
Identity = 208/210 (99.05%), Postives = 208/210 (99.05%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMVHH 180
           GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMM HH
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGHH 180

Query: 181 QGGVYGSGGFHHMGIGGGKGGNGGSGTGHR 211
           QGGVYGSGGFH MGIGGGKGGNGGSGTGHR
Sbjct: 181 QGGVYGSGGFHQMGIGGGKGGNGGSGTGHR 210

[Close]

BLAST of CmaCh02G002340 vs. ExPASy TrEMBL
Match: A0A1S3CMC5 (nuclear transcription factor Y subunit B-3 OS=Cucumis melo OX=3656 GN=LOC103502105 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 7.2e-81
Identity = 184/211 (87.20%), Postives = 190/211 (90.05%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVN-PGTGGGVSGGGFNGVGGMYGGMMMMVH 180
            G +GEKD  GGGGGPGGS        GGGVN  GT  G +GGG+NGVGGMYGG+MMM H
Sbjct: 121 -GRQGEKD--GGGGGPGGS--------GGGVNSSGTAAGGAGGGYNGVGGMYGGVMMMGH 180

Query: 181 HQGGVYGSGGFHHMGIGGGKGGNGGSGTGHR 211
           HQGGVYG  GFHHMGIGGGKGG+G SGTGHR
Sbjct: 181 HQGGVYGGAGFHHMGIGGGKGGSGASGTGHR 200

[Close]

BLAST of CmaCh02G002340 vs. ExPASy TrEMBL
Match: A0A5A7V4W8 (Nuclear transcription factor Y subunit B-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00280 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 7.2e-81
Identity = 184/211 (87.20%), Postives = 190/211 (90.05%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVN-PGTGGGVSGGGFNGVGGMYGGMMMMVH 180
            G +GEKD  GGGGGPGGS        GGGVN  GT  G +GGG+NGVGGMYGG+MMM H
Sbjct: 121 -GRQGEKD--GGGGGPGGS--------GGGVNSSGTAAGGAGGGYNGVGGMYGGVMMMGH 180

Query: 181 HQGGVYGSGGFHHMGIGGGKGGNGGSGTGHR 211
           HQGGVYG  GFHHMGIGGGKGG+G SGTGHR
Sbjct: 181 HQGGVYGGAGFHHMGIGGGKGGSGASGTGHR 200

[Close]

BLAST of CmaCh02G002340 vs. ExPASy TrEMBL
Match: A0A6J1JC44 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=LOC111483695 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 8.8e-79
Identity = 185/207 (89.37%), Postives = 191/207 (92.27%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MA+SDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYRE+EGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGT-GGGVSGGGFNGVGGMYGGMMMMVH 180
              +GEKD G GGGGPGGSGA+   GGGGGVN  T GGGV GGGFNGVGGMYGGMMMM H
Sbjct: 121 -VRQGEKD-GSGGGGPGGSGAS---GGGGGVNSSTGGGGVGGGGFNGVGGMYGGMMMMGH 180

Query: 181 HQGGVYG-SGGFHHMGIGGGKGGNGGS 206
           HQGGVYG SGG+HHMGIGGGK GN GS
Sbjct: 181 HQGGVYGSSGGYHHMGIGGGKEGNSGS 202

[Close]

BLAST of CmaCh02G002340 vs. NCBI nr
Match: XP_022971106.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita maxima])

HSP 1 Score: 374.0 bits (959), Expect = 8.4e-100
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMVHH 180
           GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMVHH
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMVHH 180

Query: 181 QGGVYGSGGFHHMGIGGGKGGNGGSGTGHR 211
           QGGVYGSGGFHHMGIGGGKGGNGGSGTGHR
Sbjct: 181 QGGVYGSGGFHHMGIGGGKGGNGGSGTGHR 210

[Close]

BLAST of CmaCh02G002340 vs. NCBI nr
Match: XP_022947534.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita moschata] >KAG6604918.1 Nuclear transcription factor Y subunit B-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 368.2 bits (944), Expect = 4.6e-98
Identity = 208/210 (99.05%), Postives = 208/210 (99.05%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMVHH 180
           GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMM HH
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGHH 180

Query: 181 QGGVYGSGGFHHMGIGGGKGGNGGSGTGHR 211
           QGGVYGSGGFH MGIGGGKGGNGGSGTGHR
Sbjct: 181 QGGVYGSGGFHQMGIGGGKGGNGGSGTGHR 210

[Close]

BLAST of CmaCh02G002340 vs. NCBI nr
Match: XP_023532503.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 364.0 bits (933), Expect = 8.7e-97
Identity = 206/210 (98.10%), Postives = 206/210 (98.10%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMVHH 180
           GGGKGEKDGGGGGGGPGGSGANV   GGGGVNPGTGGGVSGGGFNGVGGMYGGMMMM HH
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGANV---GGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGHH 180

Query: 181 QGGVYGSGGFHHMGIGGGKGGNGGSGTGHR 211
           QGGVYGSGGFHHMGIGGGKGGNGGSGTGHR
Sbjct: 181 QGGVYGSGGFHHMGIGGGKGGNGGSGTGHR 207

[Close]

BLAST of CmaCh02G002340 vs. NCBI nr
Match: XP_008464158.1 (PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis melo] >XP_008464159.1 PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis melo] >KAA0060811.1 nuclear transcription factor Y subunit B-3 [Cucumis melo var. makuwa] >TYK08821.1 nuclear transcription factor Y subunit B-3 [Cucumis melo var. makuwa])

HSP 1 Score: 310.1 bits (793), Expect = 1.5e-80
Identity = 184/211 (87.20%), Postives = 190/211 (90.05%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVN-PGTGGGVSGGGFNGVGGMYGGMMMMVH 180
            G +GEKD  GGGGGPGGS        GGGVN  GT  G +GGG+NGVGGMYGG+MMM H
Sbjct: 121 -GRQGEKD--GGGGGPGGS--------GGGVNSSGTAAGGAGGGYNGVGGMYGGVMMMGH 180

Query: 181 HQGGVYGSGGFHHMGIGGGKGGNGGSGTGHR 211
           HQGGVYG  GFHHMGIGGGKGG+G SGTGHR
Sbjct: 181 HQGGVYGGAGFHHMGIGGGKGGSGASGTGHR 200

[Close]

BLAST of CmaCh02G002340 vs. NCBI nr
Match: XP_023513391.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.8 bits (787), Expect = 7.4e-80
Identity = 184/208 (88.46%), Postives = 190/208 (91.35%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MA+SDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYRE+EGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGT-GGGVSGGGFNGVGGMYGGMMMMVH 180
            G +GEKDG GGGGGP GSGA+      GGVN  T GGGV GGGFNGVGGMYGGMMMM H
Sbjct: 121 -GRQGEKDGSGGGGGPSGSGAS------GGVNSSTGGGGVGGGGFNGVGGMYGGMMMMGH 180

Query: 181 HQGGVYGS-GGFHHMGIGGGKGGNGGSG 207
           HQGGVYGS GG+HHMGIGGGK GN GSG
Sbjct: 181 HQGGVYGSGGGYHHMGIGGGKEGNSGSG 201

[Close]

BLAST of CmaCh02G002340 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 208.4 bits (529), Expect = 5.7e-54
Identity = 122/149 (81.88%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDN+SGGH    N+  S +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGHKDGGNA--STREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLK YLQKYRE+EGEK+T 
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 120

Query: 121 GGGKGEKDGGGGGGGPG-GSGANVGGGGG 149
            G +G+K+GGGGGGG G GSG     GGG
Sbjct: 121 AGRQGDKEGGGGGGGAGSGSGGAPMYGGG 147

[Close]

BLAST of CmaCh02G002340 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 172.2 bits (435), Expect = 4.5e-43
Identity = 123/206 (59.71%), Postives = 141/206 (68.45%), Query Frame = 0


Query: 1   MADSDNESG----GHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60
           M DSD +SG    G+N N  S LS +EQDRFLPIANVSRIMKKALPANAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGE 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLK YLQ++RE+EGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KSTMGGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGM-YGGMM 180
           ++ +G  +              +G  VG      V  G GGG  GGG    GGM Y    
Sbjct: 121 RTGLGRPQ--------------TGGEVGEHQRDAV--GDGGGFYGGG----GGMQYHQHH 180

Query: 181 MMVHHQGGVYG-SGGFHHMGIGGGKG 201
             +H Q  +YG +GG    G G   G
Sbjct: 181 QFLHQQNHMYGATGGGSDSGGGAASG 186

[Close]

BLAST of CmaCh02G002340 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 )

HSP 1 Score: 168.3 bits (425), Expect = 6.5e-42
Identity = 86/117 (73.50%), Postives = 99/117 (84.62%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           +A+++  S    +N N+  + KEQDRFLPIANV RIMKK LP N KISKDAKETVQECVS
Sbjct: 15  VAETNPGSPSSKTNNNNN-NNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVS 74

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEK 118
           EFISF+TGEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK YL KYR+ EGEK
Sbjct: 75  EFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

[Close]

BLAST of CmaCh02G002340 vs. TAIR 10
Match: AT3G53340.1 (nuclear factor Y, subunit B10 )

HSP 1 Score: 162.5 bits (410), Expect = 3.6e-40
Identity = 91/142 (64.08%), Postives = 107/142 (75.35%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANS------ELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKET 60
           MA+S    GG  S+ +        L+ +EQDRFLPIAN+SRIMK+ LP N KI+KDAKET
Sbjct: 1   MAESQTGGGGGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKET 60

Query: 61  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREME 120
           +QECVSEFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y++PLK YL +YREME
Sbjct: 61  MQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

Query: 121 GEKSTMGGGKGEKDGGGGGGGP 137
           G+  T G GKG +      G P
Sbjct: 121 GD--TKGSGKGGESSAKRDGQP 140

[Close]

BLAST of CmaCh02G002340 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-39
Identity = 89/137 (64.96%), Postives = 104/137 (75.91%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MAD+ +   G    +    S +EQDR+LPIAN+SRIMKKALP N KI KDAK+TVQECVS
Sbjct: 1   MADTPSSPAGDGGESGG--SVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFIT EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+EPLK YL +YRE+EG+    
Sbjct: 61  EFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGS 120

Query: 121 G--GGKGEKDGGGGGGG 136
           G  G    +D GGG  G
Sbjct: 121 GKSGDGSNRDAGGGVSG 135

The following BLAST results are available for this feature:

BLAST of CmaCh02G002340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23310	8.0e-53	81.88	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q69J40	2.6e-43	60.89	Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q9FGJ3	6.4e-42	59.71	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q75IZ7	3.0e-39	58.72	Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q0J7P4	2.2e-34	53.22	Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=3...	[more]

BLAST of CmaCh02G002340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I2E0	4.1e-100	100.00	nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1G731	2.2e-98	99.05	nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S3CMC5	7.2e-81	87.20	nuclear transcription factor Y subunit B-3 OS=Cucumis melo OX=3656 GN=LOC1035021...	[more]
A0A5A7V4W8	7.2e-81	87.20	Nuclear transcription factor Y subunit B-3 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1JC44	8.8e-79	89.37	nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CmaCh02G002340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971106.1	8.4e-100	100.00	nuclear transcription factor Y subunit B-3-like [Cucurbita maxima]	[more]
XP_022947534.1	4.6e-98	99.05	nuclear transcription factor Y subunit B-3-like [Cucurbita moschata] >KAG6604918...	[more]
XP_023532503.1	8.7e-97	98.10	nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_008464158.1	1.5e-80	87.20	PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis melo] >XP_0084641...	[more]
XP_023513391.1	7.4e-80	88.46	nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh02G002340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14540.1	5.7e-54	81.88	nuclear factor Y, subunit B3	[more]
AT5G47640.1	4.5e-43	59.71	nuclear factor Y, subunit B2	[more]
AT2G13570.1	6.5e-42	73.50	nuclear factor Y, subunit B7	[more]
AT3G53340.1	3.6e-40	64.08	nuclear factor Y, subunit B10	[more]
AT2G38880.2	1.4e-39	64.96	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 93..111 score: 44.86 coord: 55..73 score: 50.24 coord: 74..92 score: 38.52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR11064:SF128	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3	coord: 1..185
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 27..91 e-value: 2.0E-27 score: 95.2
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 15..131 e-value: 3.9E-47 score: 161.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 24..128
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 1..185
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 58..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G002340.1	CmaCh02G002340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding