CmaCh02G002260 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G002260
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	zinc finger CCCH domain-containing protein 18-like
Location	Cma_Chr02: 1020191 .. 1021589 (+)
RNA-Seq Expression	CmaCh02G002260
Synteny	CmaCh02G002260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTGTTCTGTGTGTTTCAGTTCAAATGGATAACGAAACGACGAAAATTGTGTACGAAAGAATCTGCAAATTGGAGCCTGAATATGGGTTGAAGATCGTCGGCTACGTTATGCTGAACACCAACGAACAGGACATGATCCGATTGGCGTTCAGCCCGGATGGTATAATTCAATGTGTTATTAACACCGCCAAATCCGACCTCGGAATCCCCGAAGTTCCAATTCCATACGGTCGTGTTTCTTCTTCTCCATCCTCCCGCCTGTTCCTCCCCCACCAGACGTTCTCCGACTTCGCCCTGCAGAACCAGATGCAGTGGCTGTCGCTGGACTCGGCAACTCCGGTGAGGCGAAGCCGCCGGAGGGAGTTTCCGGTGAAAGTTTGTCATTATTTCAGTAAAGGGTATTGCAAACATGGGAATACTTGCCGATATGTTCATGATGTTGTGGAGAAGGAGCCGCGTGTTGTGGTGCTTAGTGGGAGAGCGCTGGATAAACTCGAAATCGAGATTGTCGAGCTTCTGAAATCCCGTGGTGGGCTGCCGATTTTGATTGCGGCTTTGCCGATGGTGTATCGTGAGCGGTATGGGCGCAGTCTTCTCGGCGATGGGTATCTTTCGAAGACTGGGCTTAGCCTCACGCGGCTGCTTGCTCTGTTGAGCCGCATTCGTGTTCTTGACGGGTTCATTGCTCTGTTCTCTGTTCTCTGTTCTCTGTTTCTGCTACTCTGTTCTTTGTTTGTGGTACTCTGTTCATAAATAACAAAACTAAACCCACTTTTTAATTCTACAAATTGCCATTTTCAGGCTCCATGGGAAGAATTCGATAATCTTAGCCGATGATTCTCCAAAACGCAATGAAATTTCTGAACAGAGTGTTCGACAGAATTCTTCCACTTTGGGCTGTTCATCTCAGAATTTGGCTCATTCATCAGCTTTTTAATTTTGAAAGAACGTGGAATCTGTTGGTGCAGTGCAGAGTTTTGTTTATCTACTGAGCAGCCACATGACTTCCCAGATTCTTGGACTGACCATCATGATGACAGGTCTGTGAAATAAAAAAGCCTTAACTCAAAAACTTATGTTTCTGTAGTTTTTCTGGTTTTGTGTGTTAAATCATGCAGCACAGAAGGATTTAGTGAACCAGATACCCCATTTGCATCTCACGTACAATGACGACGACTACGATGATACACATACTTCGACAATAATTTATAGAATAACAGATTAAATTTCGAACAATCGTTTCGGTTTCGATTACGATAGGCTTTGCTTTTGTTTTGTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATAGATGGGAAGAGGGCTGA

mRNA sequence

TCTTGTTCTGTGTGTTTCAGTTCAAATGGATAACGAAACGACGAAAATTGTGTACGAAAGAATCTGCAAATTGGAGCCTGAATATGGGTTGAAGATCGTCGGCTACGTTATGCTGAACACCAACGAACAGGACATGATCCGATTGGCGTTCAGCCCGGATGGTATAATTCAATGTGTTATTAACACCGCCAAATCCGACCTCGGAATCCCCGAAGTTCCAATTCCATACGGTCGTGTTTCTTCTTCTCCATCCTCCCGCCTGTTCCTCCCCCACCAGACGTTCTCCGACTTCGCCCTGCAGAACCAGATGCAGTGGCTGTCGCTGGACTCGGCAACTCCGGTGAGGCGAAGCCGCCGGAGGGAGTTTCCGGTGAAAGTTTGTCATTATTTCAGTAAAGGGTATTGCAAACATGGGAATACTTGCCGATATGTTCATGATGTTGTGGAGAAGGAGCCGCGTGTTGTGGTGCTTAGTGGGAGAGCGCTGGATAAACTCGAAATCGAGATTGTCGAGCTTCTGAAATCCCGTGGTGGGCTGCCGATTTTGATTGCGGCTTTGCCGATGGTGTATCGTGAGCGGTATGGGCGCAGTCTTCTCGGCGATGGGTATCTTTCGAAGACTGGGCTTAGCCTCACGCGGCTGCTTGCTCTGTTGAGCCGCATTCGTGTTCTTGACGGGCTCCATGGGAAGAATTCGATAATCTTAGCCGATGATTCTCCAAAACGCAATGAAATTTCTGAACAGAGTCCACATGACTTCCCAGATTCTTGGACTGACCATCATGATGACAGATGGGAAGAGGGCTGA

Coding sequence (CDS)

ATGGATAACGAAACGACGAAAATTGTGTACGAAAGAATCTGCAAATTGGAGCCTGAATATGGGTTGAAGATCGTCGGCTACGTTATGCTGAACACCAACGAACAGGACATGATCCGATTGGCGTTCAGCCCGGATGGTATAATTCAATGTGTTATTAACACCGCCAAATCCGACCTCGGAATCCCCGAAGTTCCAATTCCATACGGTCGTGTTTCTTCTTCTCCATCCTCCCGCCTGTTCCTCCCCCACCAGACGTTCTCCGACTTCGCCCTGCAGAACCAGATGCAGTGGCTGTCGCTGGACTCGGCAACTCCGGTGAGGCGAAGCCGCCGGAGGGAGTTTCCGGTGAAAGTTTGTCATTATTTCAGTAAAGGGTATTGCAAACATGGGAATACTTGCCGATATGTTCATGATGTTGTGGAGAAGGAGCCGCGTGTTGTGGTGCTTAGTGGGAGAGCGCTGGATAAACTCGAAATCGAGATTGTCGAGCTTCTGAAATCCCGTGGTGGGCTGCCGATTTTGATTGCGGCTTTGCCGATGGTGTATCGTGAGCGGTATGGGCGCAGTCTTCTCGGCGATGGGTATCTTTCGAAGACTGGGCTTAGCCTCACGCGGCTGCTTGCTCTGTTGAGCCGCATTCGTGTTCTTGACGGGCTCCATGGGAAGAATTCGATAATCTTAGCCGATGATTCTCCAAAACGCAATGAAATTTCTGAACAGAGTCCACATGACTTCCCAGATTCTTGGACTGACCATCATGATGACAGATGGGAAGAGGGCTGA

Protein sequence

MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDGIIQCVINTAKSDLGIPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCHYFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPMVYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQSPHDFPDSWTDHHDDRWEEG

Homology

[Close]

BLAST of CmaCh02G002260 vs. ExPASy Swiss-Prot
Match: Q9SJ41 (Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=At2g05160 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.1e-41
Identity = 119/306 (38.89%), Postives = 164/306 (53.59%), Query Frame = 0


Query: 4   ETTKIVYERICKLEPEYGLKIVGYVML--NTNEQDMIRLAFSPDGIIQCVINTAKSDLG- 63
           E+  +V+ RI +LEPE   KI GY++L      +DMIRLAF PD ++  VIN  K +L  
Sbjct: 5   ESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKYELAR 64

Query: 64  ---------IPEVPIP-YGRVSSS---------PSSRLFLPHQTFSDFALQNQMQWLSLD 123
                       +P P +G  + S         P    F  + T  D  LQN +Q+L+ +
Sbjct: 65  NSHHYHSPPSDHIPTPKFGSFTGSSPLSVSVSPPMKTGFWENSTEMD-TLQNNLQFLNFE 124

Query: 124 -----------------SATPVRRSRRR----EFPVKVCHYFSKGYCKHGNTCRYVHDVV 183
                               P+R SRR     EFPVK+CHYF+KG+CKHGN CRY H  +
Sbjct: 125 DPLTSPEFSNGFFSQERQCLPLRTSRRSPSLPEFPVKICHYFNKGFCKHGNNCRYFHGQI 184

Query: 184 EKEPRVV---------------VLSGRALDKLEIEIVELLKSRGGLPILIAALPMVYRER 243
             E                   V+S  +L+KLE EI+ELLK R G PI IA+LPM+Y E+
Sbjct: 185 IPERESFAQMFNPNNNLSDEEHVVSPVSLEKLEGEIIELLKLRRGAPISIASLPMMYYEK 244

[Close]

BLAST of CmaCh02G002260 vs. ExPASy Swiss-Prot
Match: Q6ZK57 (Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0126700 PE=2 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 4.8e-23
Identity = 61/136 (44.85%), Postives = 84/136 (61.76%), Query Frame = 0


Query: 119 CHYFSKGYCKHGNTCRYVH---------------DVVEKEPRVVVLSGRALDKLEIEIVE 178
           CHYFSKG CK+G  C Y H               DV   +P  V  +  +L+ LE+EI E
Sbjct: 266 CHYFSKGICKNGQNCHYSHHQVYQDALAGAAINGDVYNHQPGGV--TPGSLETLEMEITE 325

Query: 179 LLKSRGGLPILIAALPMVYRERYGRSLLGDGYLS------KTGLSLTRLLALLSRIRVLD 234
           LL SR G P+ IA+LP +Y E+YG+ L  DGYL+      K G SLTRLL+ L++IRV++
Sbjct: 326 LLNSRRGQPVSIASLPTLYGEKYGKGLQADGYLTESQRHGKAGYSLTRLLSRLNKIRVIE 385

[Close]

BLAST of CmaCh02G002260 vs. ExPASy Swiss-Prot
Match: Q84ZT0 (Putative zinc finger CCCH domain-containing protein 51 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0583300 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.9e-14
Identity = 72/240 (30.00%), Postives = 115/240 (47.92%), Query Frame = 0


Query: 26  GYVMLNTNEQDMIRLAFSPDGIIQCVINTAKSDLGIPEVPIPYGRVSSSPS--------S 85
           GY++  ++   + + A SPD  ++ + +      G  E+P+ Y R     S         
Sbjct: 68  GYILSTSSYPQIRQYAASPDEHLRSLPSLLPPPPG-QELPLAYLRAQRQSSGNYRGIQAQ 127

Query: 86  RLFLPHQTFS-------DFALQNQMQWLSLDSATPVRRSRRREFP-------VKVCHY-F 145
           R  L  QT +          L+ ++Q LS+   +P         P        K CH+ F
Sbjct: 128 RRPLIDQTGALQSSFPESICLKEELQSLSMPRNSPNAGRNLVGHPHSSSKSSSKPCHFHF 187

Query: 146 SKGYCKHGNTCRYVHDVVEK--EPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 205
            +GYCK G  C++ H  V +   PR  V    +L KL++EI ELL      P+ +  LP 
Sbjct: 188 FRGYCKKGVNCQFFHGSVPELHNPR-QVHPFASLSKLDMEIRELLIGIPP-PVAVDRLPS 247

Query: 206 VYRERYGRSLLGDGYLS------KTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKR 235
           +Y E+YG+ L  DG+L+      +TG SLT LL  L+ IRV++  HG+  ++L +D+ K+
Sbjct: 248 MYFEKYGKPLRPDGWLTESQQHGRTGCSLTSLLMGLNTIRVVEREHGQYHVVLVEDARKK 304

[Close]

BLAST of CmaCh02G002260 vs. ExPASy Swiss-Prot
Match: Q9SV09 (Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN=At3g51950 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.5e-11
Identity = 57/190 (30.00%), Postives = 86/190 (45.26%), Query Frame = 0


Query: 4   ETTKIVYERICKLEPEYGLKIVGYVMLNTN-EQDMIRLAFSPDGIIQCVINTAKSDLGI- 63
           E T+IV  RI  L+PE   KI+G ++L  + E++MIRLAF P+ ++  VI  AK +LG+ 
Sbjct: 5   EATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELGLM 64

Query: 64  ----------PEVPIPYGRVSSS--PSSRLFLPH------QTFSDFALQNQMQWLSLDSA 123
                      E+  P     SS  P+S  F  +         +DF L + M   S D  
Sbjct: 65  NCSRSPWSHQDELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSRSTDFL 124

Query: 124 TPVRR--------------SRRREFPVKVCHYFSKGYCKHGNTCRYVH-----DVVEKEP 155
             V                     F    C YF++G+CK+G +CR+VH     D+V    
Sbjct: 125 GSVHARSGSCVLDGLGYGGDSDLGFGGVPCSYFARGFCKNGASCRFVHSDGGADLVGSPS 184

[Close]

BLAST of CmaCh02G002260 vs. ExPASy Swiss-Prot
Match: Q0D3J9 (Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0682400 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.3e-07
Identity = 28/87 (32.18%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 4  ETTKIVYERICKLEPEYGLKIVGYVMLNTN-EQDMIRLAFSPDGIIQCVINTAKSDLGI- 63
          E TK+V+ RI  L+P++  KI+G++++  + E++MIRLAF P+ ++  V+  A+ +LG+ 
Sbjct: 5  EATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKELGLL 64

Query: 64 ----PEVPIPYGRVSSSPSSRLFLPHQ 85
              P  P      +++  S   L  Q
Sbjct: 65 PASGPGTPTSVAAAAAAAHSPFMLSRQ 91

[Close]

BLAST of CmaCh02G002260 vs. ExPASy TrEMBL
Match: A0A6J1I5S7 (zinc finger CCCH domain-containing protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC111469855 PE=4 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 1.3e-132
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDGIIQCVINTAKSDLG 60
           MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDGIIQCVINTAKSDLG
Sbjct: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDGIIQCVINTAKSDLG 60

Query: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120
           IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH
Sbjct: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120

Query: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180
           YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM
Sbjct: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180

Query: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240
           VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ
Sbjct: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240

Query: 241 S 242
           S
Sbjct: 241 S 241

[Close]

BLAST of CmaCh02G002260 vs. ExPASy TrEMBL
Match: A0A6J1G6P3 (zinc finger CCCH domain-containing protein 18-like OS=Cucurbita moschata OX=3662 GN=LOC111451368 PE=4 SV=1)

HSP 1 Score: 478.8 bits (1231), Expect = 1.5e-131
Identity = 240/241 (99.59%), Postives = 240/241 (99.59%), Query Frame = 0


Query: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDGIIQCVINTAKSDLG 60
           MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPD IIQCVINTAKSDLG
Sbjct: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG 60

Query: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120
           IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH
Sbjct: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120

Query: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180
           YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM
Sbjct: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180

Query: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240
           VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ
Sbjct: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240

Query: 241 S 242
           S
Sbjct: 241 S 241

[Close]

BLAST of CmaCh02G002260 vs. ExPASy TrEMBL
Match: A0A6J1CFC6 (zinc finger CCCH domain-containing protein 18 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011175 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 9.0e-57
Identity = 136/288 (47.22%), Postives = 181/288 (62.85%), Query Frame = 0


Query: 3   NETTKIVYERICKLEPEYGLKIVGYVMLNTN-EQDMIRLAFSPDGIIQCVINTAKSDLGI 62
           +++TK+VYERI KLEPEY  KI+GY++L+ + E DMIR+AFSPD +IQ +++ AKS+LGI
Sbjct: 4   SKSTKVVYERIHKLEPEYVSKIIGYLLLHGHGEHDMIRVAFSPDSVIQFLVDKAKSELGI 63

Query: 63  PEVPIP--------YGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDS-----ATPV-- 122
           PE+  P          R+  SPS   +       D++LQ++MQ+++L+        PV  
Sbjct: 64  PEIAAPAPADPYLQLSRLIPSPSPAAYSDLVVSEDYSLQSRMQFMTLEEQLESLMNPVGV 123

Query: 123 ---------------RRSRR----REFPVKVCHYFSKGYCKHGNTCRYVH---------- 182
                          RRSRR     EFPVKVCHYFSKGYCKHGN CRY H          
Sbjct: 124 EFGSNWYVPEPPLGLRRSRRSPSVAEFPVKVCHYFSKGYCKHGNNCRYFHVQPVAVAESG 183

Query: 183 -DVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPMVYRERYGRSLLGDGYL 239
            D    E +++V  G  L+KLE+EI+ELLKSR G PI IA+LPM+Y E+YGR+L  DGYL
Sbjct: 184 IDQFGNEEQIIVSPG-PLEKLEMEIIELLKSRRGAPISIASLPMIYYEKYGRNLQADGYL 243

[Close]

BLAST of CmaCh02G002260 vs. ExPASy TrEMBL
Match: A0A6J1CFZ3 (zinc finger CCCH domain-containing protein 18 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011175 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 9.0e-57
Identity = 136/288 (47.22%), Postives = 181/288 (62.85%), Query Frame = 0


Query: 3   NETTKIVYERICKLEPEYGLKIVGYVMLNTN-EQDMIRLAFSPDGIIQCVINTAKSDLGI 62
           +++TK+VYERI KLEPEY  KI+GY++L+ + E DMIR+AFSPD +IQ +++ AKS+LGI
Sbjct: 4   SKSTKVVYERIHKLEPEYVSKIIGYLLLHGHGEHDMIRVAFSPDSVIQFLVDKAKSELGI 63

Query: 63  PEVPIP--------YGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDS-----ATPV-- 122
           PE+  P          R+  SPS   +       D++LQ++MQ+++L+        PV  
Sbjct: 64  PEIAAPAPADPYLQLSRLIPSPSPAAYSDLVVSEDYSLQSRMQFMTLEEQLESLMNPVGV 123

Query: 123 ---------------RRSRR----REFPVKVCHYFSKGYCKHGNTCRYVH---------- 182
                          RRSRR     EFPVKVCHYFSKGYCKHGN CRY H          
Sbjct: 124 EFGSNWYVPEPPLGLRRSRRSPSVAEFPVKVCHYFSKGYCKHGNNCRYFHVQPVAVAESG 183

Query: 183 -DVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPMVYRERYGRSLLGDGYL 239
            D    E +++V  G  L+KLE+EI+ELLKSR G PI IA+LPM+Y E+YGR+L  DGYL
Sbjct: 184 IDQFGNEEQIIVSPG-PLEKLEMEIIELLKSRRGAPISIASLPMIYYEKYGRNLQADGYL 243

[Close]

BLAST of CmaCh02G002260 vs. ExPASy TrEMBL
Match: A0A6J1J5W0 (zinc finger CCCH domain-containing protein 18-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483739 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 3.0e-52
Identity = 123/260 (47.31%), Postives = 166/260 (63.85%), Query Frame = 0


Query: 4   ETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDGIIQCVINTAKSDLGIPE 63
           E T ++++RIC+L+ E    I+ Y++LNT+++DMIRLAF PD ++Q  I  AKSDLGI E
Sbjct: 5   EPTNLLFQRICELDAECATTIIEYIILNTDDRDMIRLAFCPDTVLQSFIEDAKSDLGITE 64

Query: 64  VP-------------IPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSL-DSATPVRRS 123
           +              +P       PSSRLF P +++SD  +QN MQ+LSL D    V   
Sbjct: 65  MVSSALSPVSISDPYLPLSVYRRDPSSRLF-PSESYSDLDIQNPMQFLSLEDQFESVNTV 124

Query: 124 RRREFPVKVCHYFSKGYCKHGNTCRYVHDVVE----KEPRVVVLSGRALDKLEIEIVELL 183
             R FP+K+CHYFSKGYCKHG+ CRY H  V+       + V+L G+AL+ LE+EIV LL
Sbjct: 125 GLRRFPLKICHYFSKGYCKHGSKCRYFHGQVKAAHANHEQRVILRGKALENLEMEIVGLL 184

Query: 184 KSRGGLPILIAALPMVYRERYGRSLLGDGYLS------KTGLSLTRLLALLSRIRVLDGL 240
           KSR G PI IA+LP+VY E YG++L  DGYL+      +   SLTRLL+ L+ I VLD  
Sbjct: 185 KSRRGSPISIASLPIVYYEFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVLDRP 244

[Close]

BLAST of CmaCh02G002260 vs. NCBI nr
Match: XP_023533200.1 (zinc finger CCCH domain-containing protein 18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 496.1 bits (1276), Expect = 1.8e-136
Identity = 253/278 (91.01%), Postives = 253/278 (91.01%), Query Frame = 0


Query: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDGIIQCVINTAKSDLG 60
           MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPD IIQCVINTAKSDLG
Sbjct: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG 60

Query: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120
           IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH
Sbjct: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120

Query: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180
           YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM
Sbjct: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180

Query: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240
           VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDG HGKNSIIL DDSPKRNEISEQ
Sbjct: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGPHGKNSIILTDDSPKRNEISEQ 240

Query: 241 S--------------------PHDFPDSWTDHHDDRWE 259
           S                    PHDFPDSWTDHHDD  E
Sbjct: 241 SERGICWCSAEMEEFCLSTEQPHDFPDSWTDHHDDSTE 278

[Close]

BLAST of CmaCh02G002260 vs. NCBI nr
Match: XP_022971078.1 (zinc finger CCCH domain-containing protein 18-like [Cucurbita maxima])

HSP 1 Score: 482.3 bits (1240), Expect = 2.7e-132
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDGIIQCVINTAKSDLG 60
           MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDGIIQCVINTAKSDLG
Sbjct: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDGIIQCVINTAKSDLG 60

Query: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120
           IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH
Sbjct: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120

Query: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180
           YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM
Sbjct: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180

Query: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240
           VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ
Sbjct: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240

Query: 241 S 242
           S
Sbjct: 241 S 241

[Close]

BLAST of CmaCh02G002260 vs. NCBI nr
Match: KAG6604911.1 (Zinc finger CCCH domain-containing protein 18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 478.8 bits (1231), Expect = 3.0e-131
Identity = 240/241 (99.59%), Postives = 240/241 (99.59%), Query Frame = 0


Query: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDGIIQCVINTAKSDLG 60
           MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPD IIQCVINTAKSDLG
Sbjct: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG 60

Query: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120
           IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH
Sbjct: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120

Query: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180
           YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM
Sbjct: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180

Query: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240
           VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ
Sbjct: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240

Query: 241 S 242
           S
Sbjct: 241 S 241

[Close]

BLAST of CmaCh02G002260 vs. NCBI nr
Match: XP_022947526.1 (zinc finger CCCH domain-containing protein 18-like [Cucurbita moschata])

HSP 1 Score: 478.8 bits (1231), Expect = 3.0e-131
Identity = 240/241 (99.59%), Postives = 240/241 (99.59%), Query Frame = 0


Query: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDGIIQCVINTAKSDLG 60
           MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPD IIQCVINTAKSDLG
Sbjct: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG 60

Query: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120
           IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH
Sbjct: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120

Query: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180
           YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM
Sbjct: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180

Query: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240
           VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ
Sbjct: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240

Query: 241 S 242
           S
Sbjct: 241 S 241

[Close]

BLAST of CmaCh02G002260 vs. NCBI nr
Match: KAG7026992.1 (Zinc finger CCCH domain-containing protein 18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 478.0 bits (1229), Expect = 5.1e-131
Identity = 247/265 (93.21%), Postives = 247/265 (93.21%), Query Frame = 0


Query: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDGIIQCVINTAKSDLG 60
           MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPD IIQCVINTAKSDLG
Sbjct: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG 60

Query: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120
           IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH
Sbjct: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120

Query: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180
           YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM
Sbjct: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180

Query: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240
           VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ
Sbjct: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240

Query: 241 SPHDFP-----DSWTDHHDDRWEEG 261
           S           S      DRWEEG
Sbjct: 241 SVRQNSSTLGCSSQNLAFFDRWEEG 265

[Close]

BLAST of CmaCh02G002260 vs. TAIR 10
Match: AT2G05160.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain )

HSP 1 Score: 169.5 bits (428), Expect = 3.6e-42
Identity = 119/306 (38.89%), Postives = 164/306 (53.59%), Query Frame = 0


Query: 4   ETTKIVYERICKLEPEYGLKIVGYVML--NTNEQDMIRLAFSPDGIIQCVINTAKSDLG- 63
           E+  +V+ RI +LEPE   KI GY++L      +DMIRLAF PD ++  VIN  K +L  
Sbjct: 5   ESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKYELAR 64

Query: 64  ---------IPEVPIP-YGRVSSS---------PSSRLFLPHQTFSDFALQNQMQWLSLD 123
                       +P P +G  + S         P    F  + T  D  LQN +Q+L+ +
Sbjct: 65  NSHHYHSPPSDHIPTPKFGSFTGSSPLSVSVSPPMKTGFWENSTEMD-TLQNNLQFLNFE 124

Query: 124 -----------------SATPVRRSRRR----EFPVKVCHYFSKGYCKHGNTCRYVHDVV 183
                               P+R SRR     EFPVK+CHYF+KG+CKHGN CRY H  +
Sbjct: 125 DPLTSPEFSNGFFSQERQCLPLRTSRRSPSLPEFPVKICHYFNKGFCKHGNNCRYFHGQI 184

Query: 184 EKEPRVV---------------VLSGRALDKLEIEIVELLKSRGGLPILIAALPMVYRER 243
             E                   V+S  +L+KLE EI+ELLK R G PI IA+LPM+Y E+
Sbjct: 185 IPERESFAQMFNPNNNLSDEEHVVSPVSLEKLEGEIIELLKLRRGAPISIASLPMMYYEK 244

[Close]

BLAST of CmaCh02G002260 vs. TAIR 10
Match: AT3G52980.1 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 167.2 bits (422), Expect = 1.8e-41
Identity = 123/298 (41.28%), Postives = 170/298 (57.05%), Query Frame = 0


Query: 4   ETTKIVYERICKLEPEYGLKIVGYVML--NTNEQDMIRLAFSPDGIIQCVINTAKSDL-- 63
           E   +V+ RI +LEPE   KI+GY++L  + N++DMIRLAF PD +++ +IN  K +L  
Sbjct: 5   EAMNVVHNRIHQLEPENASKIIGYLLLMQDQNDRDMIRLAFCPDSVMRSMINCVKCELAK 64

Query: 64  -----GIP---EVPI-PYGR----------VSSSPSSRL-----FLPHQTFSDFALQNQM 123
                 IP    + I  +G           VS+SP S L     F  +    D +L++ +
Sbjct: 65  NSHYNNIPSSDHIQIRKFGSLSGSSNQSLLVSASPPSVLSMGTSFWENTNDMDSSLKDNV 124

Query: 124 QWL--SLDSAT----------------PVRRSRRR----EFPVKVCHYFSKGYCKHGNTC 183
           Q+     DS T                 +R SRR     EFP+K+CHYF+KG+CKHGN C
Sbjct: 125 QYFLDFEDSVTSPEFSTSFFSQKKQSLSLRTSRRSLSLPEFPLKICHYFNKGFCKHGNNC 184

Query: 184 RYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPMVYRERYGRSLLGD 243
              H+ +  E  VV  S  +L+KLE EI+ELLKSR G PI IA LPM+Y E+YGRSL  +
Sbjct: 185 ---HNNLSDEEHVV--SPGSLEKLEREIIELLKSRRGAPISIAFLPMMYHEKYGRSLQAE 244

[Close]

BLAST of CmaCh02G002260 vs. TAIR 10
Match: AT3G51950.1 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-12
Identity = 57/190 (30.00%), Postives = 86/190 (45.26%), Query Frame = 0


Query: 4   ETTKIVYERICKLEPEYGLKIVGYVMLNTN-EQDMIRLAFSPDGIIQCVINTAKSDLGI- 63
           E T+IV  RI  L+PE   KI+G ++L  + E++MIRLAF P+ ++  VI  AK +LG+ 
Sbjct: 5   EATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELGLM 64

Query: 64  ----------PEVPIPYGRVSSS--PSSRLFLPH------QTFSDFALQNQMQWLSLDSA 123
                      E+  P     SS  P+S  F  +         +DF L + M   S D  
Sbjct: 65  NCSRSPWSHQDELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSRSTDFL 124

Query: 124 TPVRR--------------SRRREFPVKVCHYFSKGYCKHGNTCRYVH-----DVVEKEP 155
             V                     F    C YF++G+CK+G +CR+VH     D+V    
Sbjct: 125 GSVHARSGSCVLDGLGYGGDSDLGFGGVPCSYFARGFCKNGASCRFVHSDGGADLVGSPS 184

[Close]

BLAST of CmaCh02G002260 vs. TAIR 10
Match: AT3G51950.2 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-12
Identity = 57/190 (30.00%), Postives = 86/190 (45.26%), Query Frame = 0


Query: 4   ETTKIVYERICKLEPEYGLKIVGYVMLNTN-EQDMIRLAFSPDGIIQCVINTAKSDLGI- 63
           E T+IV  RI  L+PE   KI+G ++L  + E++MIRLAF P+ ++  VI  AK +LG+ 
Sbjct: 5   EATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELGLM 64

Query: 64  ----------PEVPIPYGRVSSS--PSSRLFLPH------QTFSDFALQNQMQWLSLDSA 123
                      E+  P     SS  P+S  F  +         +DF L + M   S D  
Sbjct: 65  NCSRSPWSHQDELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSRSTDFL 124

Query: 124 TPVRR--------------SRRREFPVKVCHYFSKGYCKHGNTCRYVH-----DVVEKEP 155
             V                     F    C YF++G+CK+G +CR+VH     D+V    
Sbjct: 125 GSVHARSGSCVLDGLGYGGDSDLGFGGVPCSYFARGFCKNGASCRFVHSDGGADLVGSPS 184

[Close]

BLAST of CmaCh02G002260 vs. TAIR 10
Match: AT3G63450.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 50.4 bits (119), Expect = 2.5e-06
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 4  ETTKIVYERICKLEPEYGLKIVGYVMLNTN-EQDMIRLAFSPDGIIQCVINTAKSDL 60
          E T+IV  RI  L+P    KI+G ++L  + E++MIRLAF P  ++  VI  AK DL
Sbjct: 5  EATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKDL 61

The following BLAST results are available for this feature:

BLAST of CmaCh02G002260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJ41	5.1e-41	38.89	Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q6ZK57	4.8e-23	44.85	Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica OX...	[more]
Q84ZT0	6.9e-14	30.00	Putative zinc finger CCCH domain-containing protein 51 OS=Oryza sativa subsp. ja...	[more]
Q9SV09	5.5e-11	30.00	Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q0D3J9	6.3e-07	32.18	Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of CmaCh02G002260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I5S7	1.3e-132	100.00	zinc finger CCCH domain-containing protein 18-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1G6P3	1.5e-131	99.59	zinc finger CCCH domain-containing protein 18-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1CFC6	9.0e-57	47.22	zinc finger CCCH domain-containing protein 18 isoform X2 OS=Momordica charantia ...	[more]
A0A6J1CFZ3	9.0e-57	47.22	zinc finger CCCH domain-containing protein 18 isoform X1 OS=Momordica charantia ...	[more]
A0A6J1J5W0	3.0e-52	47.31	zinc finger CCCH domain-containing protein 18-like isoform X1 OS=Cucurbita maxim...	[more]

BLAST of CmaCh02G002260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023533200.1	1.8e-136	91.01	zinc finger CCCH domain-containing protein 18-like [Cucurbita pepo subsp. pepo]	[more]
XP_022971078.1	2.7e-132	100.00	zinc finger CCCH domain-containing protein 18-like [Cucurbita maxima]	[more]
KAG6604911.1	3.0e-131	99.59	Zinc finger CCCH domain-containing protein 18, partial [Cucurbita argyrosperma s...	[more]
XP_022947526.1	3.0e-131	99.59	zinc finger CCCH domain-containing protein 18-like [Cucurbita moschata]	[more]
KAG7026992.1	5.1e-131	93.21	Zinc finger CCCH domain-containing protein 18, partial [Cucurbita argyrosperma s...	[more]

BLAST of CmaCh02G002260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G05160.1	3.6e-42	38.89	CCCH-type zinc fingerfamily protein with RNA-binding domain	[more]
AT3G52980.1	1.8e-41	41.28	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing ...	[more]
AT3G51950.1	3.9e-12	30.00	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing ...	[more]
AT3G51950.2	3.9e-12	30.00	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing ...	[more]
AT3G63450.1	2.5e-06	45.61	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 113..139 e-value: 0.0041 score: 26.4
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 117..138 e-value: 2.4E-6 score: 27.3
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 113..140 score: 14.70859
IPR025605	OST-HTH/LOTUS domain	PFAM	PF12872	OST-HTH	coord: 154..221 e-value: 3.6E-5 score: 23.5
None	No IPR available	GENE3D	4.10.1000.10		coord: 105..160 e-value: 1.8E-6 score: 29.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 231..260
None	No IPR available	PANTHER	PTHR24009	RNA-BINDING (RRM/RBD/RNP MOTIFS)	coord: 3..241
None	No IPR available	PANTHER	PTHR24009:SF0	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18	coord: 3..241
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 115..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G002260.1	CmaCh02G002260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding