CmaCh02G002050 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G002050
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2
LocationCma_Chr02: 916675 .. 919512 (+)
RNA-Seq ExpressionCmaCh02G002050
SyntenyCmaCh02G002050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATAGTTGAAACCTCTCAGACTGAAAGTAGGGTTTTAGCGTTAACCCTCGCAGGCAACGAAGCAAGACTCGAGTTCTTTCAGAATCTATCATTTCTTCTGAGTAACAATGGCCTCAATTGGCGCTAGATCCGTTTTCCGATCATTTTCCGGCTCTGCTCGCCGTGCTGCTGCTCATATTGGTTCTCAAGCCCGTTCATCGTCAGGCTCTCCCTTTAGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGCGTTGACTAAATGCTCTTGCGTCCATGAAAAGCGCGAAAAGATTCCGAGTCTATAGCTGCTTGAGTTTTTTTTTCTTTTCCTTCTCTTTCTCCAATTGGAGAAATGTTTCAATTATTAATATGTATGGTGATGTATTCGGCGTATGAAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATAATGCCGTTTCACTCTGCGTCGTCGGCAGCTGTGATGATTTCAATGCTCTCTATCTCACGCCGCAGCTGCGGTTGGCTTCCCGAAGGTGCGCTAACTGATAATTTAGTTCTCAACTTCCTTGATCTTTCATGAGCTAGGTCGATATAGGAAAGGACTCTATAATAATTTTGTACAGTTTGTAAGTGATCATTTACTGGAAGTTGATTTTCTATTTGTATTAGTTCTCGGTTGGATGAATTTCAGCTTAATACTTATTCTCAAGAATCAAGAAAGGAAGTTGTAGTTCGAGTGGGGGTACTGATCAATAATATTTAGAAGTACTGATATCTGTATTACAGTTTGGTGGATACATTAGCCCCATTAACCGCATGCTTCTGGAGGAAGAAAGATCCATGCTACTATTCTTTGATTAAATTTGCTAACGTCTATGAACCATCAGGAGCTACACCATGAAAATATTTCCTATGGCTTAAATTTAGTGCCAATACGGTTTATCATGCCAAGTAGCTTGTAATTGTTCATAAGAATTTCCTGCGTACATAACGTTGGATCTGTTAACTCTAGTGATATGATATCTCTTCATGAGCTTTTGTTACCATTAACTTGTAAACATAGATTCTTTATCCCACTCCGTAATTTTCTTGATTTTATGTTTTGAAAGCAGAAGTGGATCTTCTTCTAGGTTGTCTAACTAGTGGATTTTTTTACTCTTGAATTAGGTAGCTAGCACACTTTATAGGCCCATTGATGTTCTTCTTGCCTTCTTGTTGCTCTGGTGAGTTGGTGCCCATGAACTTGTATAAAACAGATACAATTGAACGGAATTATATAATAACATGCATGCATAATAAGTTGATCATTTTTTCCCCCTAGTGGACAGTTTATTACATCAAGTAGCTTATCTCAAGTTAGGATGCAAGCAAGCTTAGCATACAATATTGTTTCGTTCTCTCTTTTCTTCACCTTCCATTTCCCGTACTTGGATCAGAGTTTAAGACCTAAACCTTCTCTTCGTAGTTTTTTATTCTTACTTGAATAGGTCACTTATGAGAAAACCTTCCATTCTTTATTCAAATTGTTAATTAAAAAACTACATTCCCCTGTTTTATATGTAGGCAAAGACAAGACTAGATGAGGATCGGGAAGCAGGAAGGAATGACTTGAGTTGTTTTTTGATTTTCACCTTTTAAGTCCTAGGCGTTGCATACCCCCCTGCCCCGCCCTTCAGACAAAAAAGAAAAAAAAAAAACCATAGGCGATGATATCATCAATAGGTTAGATGAGATTATTGTATTTGGAATGAAGTAATAAACTATGGTATTCTATTCAGTTTTTTGTATTTGTAGATTGTTGTCTTTTGAAGTGTTAATGGATTATATATACAATTTAATTCTGCTGCAACTATATGGGGTTACAGATTACTAAATCCTTGCCGAATAAATTTTGCTTCTAAATAGTTTATTGTTTGCTGTTTTGCAAAATTTACTTTGTTCTCAAGTATTTGGTGCACTACTTCATATAGATGGGGGTGGCAAACTCAATTATATTACTCTGACCATCAAGTACCATGGAAATAGGGGTGAAGTCAGGGATATAAAGAAGAACATAGGTAAACTTTGTTACTTATTCGTAACAAGTAAATCCTTTGCTTTGGACATAAAAAGTATCAATATTTTGGGGTGCTAGATCCCCATCACAAGGTTTGACACGATCCAGAAAGCACTTGAACATTATCAACTTTGTAAGCCTACTTGGGTATTGAGTATATGTAAGAACGAAACTCCGTGCAATGGATAATTGTAACTTTGGAAAACAGAATCTGCTATGCTCACTTTTTTTTACATTGAATCAATCATTTATTTTATATCTGCTTGGATATGGATAAGATGATTTACTTGATGGGCAAGGTCTAGTCTAGGATGACCGAGTTGTCTAATTAAAAATGGAGTTATCCTCTTTACCAGTTTTGAGCTCTTGAAGTCAGAGATAGTTATCAATGTCACAAAACAAGAAGTTTGCTGTTACGTATTTCTAGTTCTTGCTGTCTGACTGTCCTTTGTTTTGTGTTCTAGGGCGGTGATATTCAATCAGCTTGTCTAACATGAAGGCTTGCCACAATGTTGAACTTGCCATTTTCATCACCTGTCTGTACCTCAAGCTGTCTTATTCTATCTGAGCTGTAACAGAATCTTTCCATATCCCATTTTCCCAGATGTTCTAAATTCTGTTTCCTGGCTTTTCATAGGACTTGATTCAATATAGATAGATCGTCTGCAACACTCCCTATTACATCTTCTTTTGATATAATACTCAAAATCAGAATCTAGATGTGAGAACAGCATCCGGTTAGTGATTTGTCAAGTTTATCTCATTAGACCAAATTTTGTTTGTC

mRNA sequence

CCATAGTTGAAACCTCTCAGACTGAAAGTAGGGTTTTAGCGTTAACCCTCGCAGGCAACGAAGCAAGACTCGAGTTCTTTCAGAATCTATCATTTCTTCTGAGTAACAATGGCCTCAATTGGCGCTAGATCCGTTTTCCGATCATTTTCCGGCTCTGCTCGCCGTGCTGCTGCTCATATTGGTTCTCAAGCCCGTTCATCGTCAGGCTCTCCCTTTAGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATAATGCCGTTTCACTCTGCGTCGTCGGCAGCTGTGATGATTTCAATGCTCTCTATCTCACGCCGCAGCTGCGGTTGGCTTCCCGAAGGGCGGTGATATTCAATCAGCTTGTCTAACATGAAGGCTTGCCACAATGTTGAACTTGCCATTTTCATCACCTGTCTGTACCTCAAGCTGTCTTATTCTATCTGAGCTGTAACAGAATCTTTCCATATCCCATTTTCCCAGATGTTCTAAATTCTGTTTCCTGGCTTTTCATAGGACTTGATTCAATATAGATAGATCGTCTGCAACACTCCCTATTACATCTTCTTTTGATATAATACTCAAAATCAGAATCTAGATGTGAGAACAGCATCCGGTTAGTGATTTGTCAAGTTTATCTCATTAGACCAAATTTTGTTTGTC

Coding sequence (CDS)

ATGGCCTCAATTGGCGCTAGATCCGTTTTCCGATCATTTTCCGGCTCTGCTCGCCGTGCTGCTGCTCATATTGGTTCTCAAGCCCGTTCATCGTCAGGCTCTCCCTTTAGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATAATGCCGTTTCACTCTGCGTCGTCGGCAGCTGTGATGATTTCAATGCTCTCTATCTCACGCCGCAGCTGCGGTTGGCTTCCCGAAGGGCGGTGA

Protein sequence

MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLESIMPFHSASSAAVMISMLSISRRSCGWLPEGR
Homology
[Close]
BLAST of CmaCh02G002050 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.0e-07
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = 0 

Query: 5  GARSVFRSFSGSARRAAAHIGSQARSSSGSP--FRMATNKPLSHRTFRCAAEMSFCLESI 64
          GARS+ R  + S+R AAA  G  A  +  +P  FR    +       R   E+SFC+ES+
Sbjct: 9  GARSMLR--AASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESL 68

Query: 65 MPFHSASSAAVMISMLSISRRSCGWLPE 91
          +P+HSA+++A+M S LSIS ++ GWL +
Sbjct: 69 LPYHSATASALMTSKLSISGQTYGWLSD 94

[Close]
BLAST of CmaCh02G002050 vs. ExPASy TrEMBL
Match: A0A6J1I155 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469903 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.1e-40
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEGR 93
          SIMPFHSASSAAVMISMLSISRRSCGWLPEGR
Sbjct: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEGR 92

[Close]
BLAST of CmaCh02G002050 vs. ExPASy TrEMBL
Match: A0A6J1I2H5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469903 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.6e-40
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEGR 93
          SIMPFHSASSAAVMISMLSISRRSCGWLPEG+
Sbjct: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEGK 92

[Close]
BLAST of CmaCh02G002050 vs. ExPASy TrEMBL
Match: A0A6J1G5L1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451052 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.3e-39
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEGR 93
          SIMPFHSASSAA+MISMLSISRRSCGWLPEGR
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEGR 92

[Close]
BLAST of CmaCh02G002050 vs. ExPASy TrEMBL
Match: A0A6J1G5E8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451052 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.1e-39
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEGR 93
          SIMPFHSASSAA+MISMLSISRRSCGWLPEG+
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEGK 92

[Close]
BLAST of CmaCh02G002050 vs. ExPASy TrEMBL
Match: A0A6J1CIN8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111011321 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.4e-35
Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MAS+GARSVFRSFSGSARRAAAHIGS+AR+SS SPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASLGARSVFRSFSGSARRAAAHIGSEARASS-SPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEGR 93
          S+MPFHSASS+A+M SMLSISR SCGWLPEGR
Sbjct: 61 SMMPFHSASSSALMTSMLSISRNSCGWLPEGR 91

[Close]
BLAST of CmaCh02G002050 vs. NCBI nr
Match: XP_022971142.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 174.5 bits (441), Expect = 4.3e-40
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEGR 93
          SIMPFHSASSAAVMISMLSISRRSCGWLPEGR
Sbjct: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEGR 92

[Close]
BLAST of CmaCh02G002050 vs. NCBI nr
Match: XP_022971141.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 173.3 bits (438), Expect = 9.5e-40
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEGR 93
          SIMPFHSASSAAVMISMLSISRRSCGWLPEG+
Sbjct: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEGK 92

[Close]
BLAST of CmaCh02G002050 vs. NCBI nr
Match: XP_022947068.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita moschata] >XP_023534318.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.0 bits (432), Expect = 4.7e-39
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEGR 93
          SIMPFHSASSAA+MISMLSISRRSCGWLPEGR
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEGR 92

[Close]
BLAST of CmaCh02G002050 vs. NCBI nr
Match: XP_023534316.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-38
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEGR 93
          SIMPFHSASSAA+MISMLSISRRSCGWLPEG+
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEGK 92

[Close]
BLAST of CmaCh02G002050 vs. NCBI nr
Match: XP_022947067.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-38
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEGR 93
          SIMPFHSASSAA+MISMLSISRRSCGWLPEG+
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEGK 92

[Close]
BLAST of CmaCh02G002050 vs. TAIR 10
Match: AT2G33847.2 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 7.6e-11
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 0 

Query: 6  ARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLESIMPF 65
          ARSVFRS  G A  AA        SS+ S F++    PLSHR FR   E+S C+E+++P+
Sbjct: 4  ARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLPY 63

Query: 66 HSASSAAVMISMLSISRRSCGWLPEG 92
          H+A+++A++ SMLS+S RS  W  +G
Sbjct: 64 HTATASALLNSMLSVSGRSI-WTFQG 88

[Close]
BLAST of CmaCh02G002050 vs. TAIR 10
Match: AT2G33847.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-10
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 6  ARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLESIMPF 65
          ARSVFRS  G A  AA        SS+ S F++    PLSHR FR   E+S C+E+++P+
Sbjct: 4  ARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLPY 63

Query: 66 HSASSAAVMISMLSISRRS 85
          H+A+++A++ SMLS+S RS
Sbjct: 64 HTATASALLNSMLSVSGRS 82

[Close]
BLAST of CmaCh02G002050 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 0 

Query: 6  ARSVFRSFSGSARRAAAHIGSQAR---SSSGSPFRMATNKPLSHRTFRCAAEMSFCLESI 65
          ARSVFRS +  A   A    +  +   SS+ + FRM    PL++R FR   E+S C+E++
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSAAVMISMLSISRRSCGWLPEG 92
          +P+H+A+++A++ SMLS+SRR  GW+ +G
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDG 90

[Close]
BLAST of CmaCh02G002050 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 0 

Query: 6  ARSVFRSFSGSARRAAAHIGSQAR---SSSGSPFRMATNKPLSHRTFRCAAEMSFCLESI 65
          ARSVFRS +  A   A    +  +   SS+ + FRM    PL++R FR   E+S C+E++
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSAAVMISMLSISRRSCGWLPEG 92
          +P+H+A+++A++ SMLS+SRR  GW+ +G
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDG 90

[Close]
BLAST of CmaCh02G002050 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 0 

Query: 6  ARSVFRSFSGSARRAAAHIGSQAR---SSSGSPFRMATNKPLSHRTFRCAAEMSFCLESI 65
          ARSVFRS +  A   A    +  +   SS+ + FRM    PL++R FR   E+S C+E++
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSAAVMISMLSISRRSCGWLPEG 92
          +P+H+A+++A++ SMLS+SRR  GW+ +G
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDG 90

The following BLAST results are available for this feature:
BLAST of CmaCh02G002050 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93ZJ35.0e-0740.91Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
BLAST of CmaCh02G002050 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I1552.1e-40100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
A0A6J1I2H54.6e-4098.91protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A6J1G5L12.3e-3997.83protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
A0A6J1G5E85.1e-3996.74protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A6J1CIN83.4e-3590.22protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ... [more]
BLAST of CmaCh02G002050 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022971142.14.3e-40100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
XP_022971141.19.5e-4098.91protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
XP_022947068.14.7e-3997.83protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
XP_023534316.11.1e-3896.74protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
XP_022947067.11.1e-3896.74protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
BLAST of CmaCh02G002050 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G33847.27.6e-1145.35unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... [more]
AT2G33847.11.3e-1046.84unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... [more]
AT1G28395.21.7e-1041.57unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.11.7e-1041.57unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.31.7e-1041.57unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 3..91
IPR033251Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrialPANTHERPTHR33156:SF48PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIALcoord: 3..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G002050.1CmaCh02G002050.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000741 karyogamy