CmaCh02G001500 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G001500
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr02: 706015 .. 708129 (-)
RNA-Seq ExpressionCmaCh02G001500
SyntenyCmaCh02G001500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGCTCTTATGCTCAAAGTGGAGTACGAGTCATATGAGAGCTTATACTCAGTGGAGTACGAGTCATATGAGAGCTTATACTCAGTGGAGTACGAGTCATATGAGAGCTTATACTCAGTGGAGTACGAGTCATATGAGAGCTTATACTCAGTGGAGTACGAGTCATATGAGAGCTTATACTCATTGGAGTACGAGTCATATGAGAACTTATACTCATTGGAGTACGAGTCATATGAGAACTTATACTCATTGGAGTACGAGTCATATGAGAACTTATACTCAATGGAGTACGAGTCATATGAGAACTTATACTCAATGGAGTACGAGTCATATGAGAACTTATACTCAGTGGAGTACGAGTCATATGAGAACTTATACTCAGTGGAGTATAAGTAAGGAACATTATCTTCATGAATTTATATAAGTAAAAAACATTATCTTCGTTGTTACGAGTCATATGAGAGCTTATATTCAAAGTGGACGATATCTTACCATTCTCGTGGAGTACGAATCATATGAGAGCCTATGCTCAAAGTAGACGATATCTTACCATTCTCGCAATTCTTCCTTCTCTCCATTTTAGAGGTAAATTAATGAATAGAAAGTAATTAAAACGAGTGGCTGATCATGCCATATAGCATATTTGAATATGAGTGATTTAACAACCATTAACGATGTGTTATGGCTGATAGGTTGTAAATAAAGATGTAGCTATAGCCAGTACAAGCTCCGTAAGCGGCAGACTGTCAGCAATCACTGTCCATAACAGAGGAGTGGTTCTAAATTGCCCGGAAGAGGTTGGGTTATTTTTGTGCTCAAATTGGTTGGTTCTTCGTTTGTTTAACAAGATTTTTGTGTTTCTCTTGATTTGTACAGTAGCAATGGTGAAATATATCCAGTTAGTAAGAGAAAACAGGTGATGAAGACCTTCGTGGGACAACCTTAGTCCATGTGTTTTAGCCTCTTTACTTTCCACCCACGAAATCATTGCTTATTAGGCAGAGCTACAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGTGTGTGTTTTTTATCCCACGTAATCTGTTTTGGCAGAGTTAATAGTGTTTCTGAGAGTGTAATAGCACCAATTTTGCAGCATAATAATACAATTTTCAGTCTCCTTCTATTCACAAAACAAACACCCAAACAGATTCTTGCCAGACATTCTTAAAATGATTGAAACTAATAAGAATTTGAGAACAGAATCTTTATATCAGAAACATCCCAGAAATCTAAAATGATAAAAGATCCTACTGCAAACAAGATTATTTCCTTAAATAGATCCTATTCTAAAGGACAAAATCTATTGCTGAACTTATCAAATATTTAAGTTAGAAATTTGTTTGAAATTCAAATTTTTAGAAGCCATCTATGGGTTGTGTTGTGAAGTTAGGTCATTTAGATCACCATTTTCGAAAATAAAGATTTGAGATGGATTATGAACTCTATTCAAGTCATTTAGATCACCAAATTTTATCAATTCAAAATTTCAAGTTTATCTTAAAAAAAATTTTATCTATCACAAAATAATCAAAGGTGAAATGCTATGCAGCTCCTCAAGCTAGTTTAGATTGAGATGGAGTTTTAATGTCAGATGGGTCCAACCGAGTATGCTTGACCCCATGATGGAGGGTGAGATTAACATTAGTTAGAGAGAGAACAAAATATTCATGAGTGTGGAAACCGACTAAAACTAACACATAAAAAAAAAAAAATTACATTTTTTCTGTTCTTTCTAATAAAATCTCATAATTTTACATTTTACCTTTCACCATGGATTGAAAACCCAAAAAATACTCAGAATCTCCGGCAAATCACAAGCTTTGGCCAGTTCTATTTCTTACTGTTAATGCAAGTGAATTAACTCTTCTTCCTTGCAGTCTCTAATGGCGATATCCAATCCTTCACCGCCATTGGAAGGCAATACATCACAGCACTGTCTTCTCGGAGCCTGCAACTGCATATTCATCATCATCAACATCAGTTTCATACCAAAATCACTACTCAAAATCTTGCATCTCTGA

mRNA sequence

ATGAGAGCTCTTATGCTCAAAGTGGAGTACGAGTCATATGAGAGCTTATACTCAGTGGAGTACGAGTCATATGAGAGCTTATACTCAGTGGAGTACGAGTCATATGAGAGCTTATACTCAGTGGAGTACGAGTCATATGAGAGCTTATACTCAGTGGAGTACGAGTCATATGAGAGCTTATACTCATTGGAGTACGAGTCATATGAGAACTTATACTCATTGGAGTACGAGTCATATGAGAACTTATACTCATTGGAGTACGAGTCATATGAGAACTTATACTCAATGGAGTACGAGTCATATGAGAACTTATACTCAATGGAGTACGAGTCATATGAGAACTTATACTCAGTGGATAGCAATGGTGAAATATATCCAGTTAGTAAGAGAAAACAGTCTCTAATGGCGATATCCAATCCTTCACCGCCATTGGAAGGCAATACATCACAGCACTGTCTTCTCGGAGCCTGCAACTGCATATTCATCATCATCAACATCAGTTTCATACCAAAATCACTACTCAAAATCTTGCATCTCTGA

Coding sequence (CDS)

ATGAGAGCTCTTATGCTCAAAGTGGAGTACGAGTCATATGAGAGCTTATACTCAGTGGAGTACGAGTCATATGAGAGCTTATACTCAGTGGAGTACGAGTCATATGAGAGCTTATACTCAGTGGAGTACGAGTCATATGAGAGCTTATACTCAGTGGAGTACGAGTCATATGAGAGCTTATACTCATTGGAGTACGAGTCATATGAGAACTTATACTCATTGGAGTACGAGTCATATGAGAACTTATACTCATTGGAGTACGAGTCATATGAGAACTTATACTCAATGGAGTACGAGTCATATGAGAACTTATACTCAATGGAGTACGAGTCATATGAGAACTTATACTCAGTGGATAGCAATGGTGAAATATATCCAGTTAGTAAGAGAAAACAGTCTCTAATGGCGATATCCAATCCTTCACCGCCATTGGAAGGCAATACATCACAGCACTGTCTTCTCGGAGCCTGCAACTGCATATTCATCATCATCAACATCAGTTTCATACCAAAATCACTACTCAAAATCTTGCATCTCTGA

Protein sequence

MRALMLKVEYESYESLYSVEYESYESLYSVEYESYESLYSVEYESYESLYSVEYESYESLYSLEYESYENLYSLEYESYENLYSLEYESYENLYSMEYESYENLYSMEYESYENLYSVDSNGEIYPVSKRKQSLMAISNPSPPLEGNTSQHCLLGACNCIFIIINISFIPKSLLKILHL
Homology
[Close]
BLAST of CmaCh02G001500 vs. ExPASy TrEMBL
Match: A0A3B1IU41 (Uncharacterized protein OS=Astyanax mexicanus OX=7994 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.5e-05
Identity = 49/117 (41.88%), Postives = 84/117 (71.79%), Query Frame = 0 

Query: 3    ALMLKVEYESYESLYSVEYESYESLYSVEYESYESLYSVEYESYESLYSVEYESYESLYS 62
            A +  +E++S  SL S+E++S  SL S+E++S  SL S+E++S  SL S+E++S  SL S
Sbjct: 1389 ASLKSLEFKSNASLESLEFKSNASLKSLEFKSNASLKSLEFKSNASLESLEFKSNASLES 1448

Query: 63   LEYESYENLYSLEYESYENLYSLEYESYENLYSMEYESYENLYSMEYESYENLYSVD 120
            LE++S  +L SLE++S  +L SLE++S  +L S+E++S  +L S+E++S  +L S++
Sbjct: 1449 LEFKSNASLESLEFKSNASLESLEFKSNASLESLEFKSNASLESLEFKSNASLESLE 1505

[Close]
BLAST of CmaCh02G001500 vs. ExPASy TrEMBL
Match: A0A6F9CBG5 (Uncharacterized protein OS=Coregonus sp. 'balchen' OX=861768 GN=CSTEINMANNI_LOCUS3864511 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.9e-04
Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 0 

Query: 8   VEYESYESLYSVEYESYESLYSVEYESYESLYSVEYESYESLYSVEYESYESLYSLEYES 67
           V+YE    LY ++YE    LY V+YE    LY ++YE    LY V+YE    LY L+YE 
Sbjct: 351 VQYEPVIPLYLLQYEPVIPLYLVQYEPVIPLYLLQYEPVIPLYLVQYEPVIPLYLLQYEP 410

Query: 68  YENLYSLEYESYENLYSLEYESYENLYSMEYESYENLYSMEYESYENLYSVDSNG 123
              LY L+YE    LY L+YE    LY ++YE    LY ++YE    LY + S G
Sbjct: 411 VIPLYLLQYEPVIPLYLLQYEPVIPLYLLQYEPVIPLYLLQYEPVIPLYLLCSMG 465

The following BLAST results are available for this feature:
BLAST of CmaCh02G001500 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh02G001500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3B1IU415.5e-0541.88Uncharacterized protein OS=Astyanax mexicanus OX=7994 PE=4 SV=1[more]
A0A6F9CBG57.9e-0441.74Uncharacterized protein OS=Coregonus sp. 'balchen' OX=861768 GN=CSTEINMANNI_LOCU... [more]
BLAST of CmaCh02G001500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh02G001500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G001500.1CmaCh02G001500.1mRNA