CmaCh02G000800 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G000800
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionRetrotrans_gag domain-containing protein
LocationCma_Chr02: 384170 .. 385258 (-)
RNA-Seq ExpressionCmaCh02G000800
SyntenyCmaCh02G000800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCGAAAACTCAGGCGTTCACCGCCGCCGTTGCGGCGGCGTAACTACGCCACCGATTATGATGCTTCCCCATCTCAATCTCTCAACGCATCAAACGAAGACGACTACGACGCTTCTGAATCTAATAACTTCCAAACCAGCGGCCACAAATCAAAATCCCTAGAAATCAATGAAGAATCCGCCACGAATAGTCCAACGAATTTACAGAGTCCAAACGCCGCCGCAACAGTATTTCCATACATTAACATTGCACCGTTGCCTGTTTTTCACGGCGGCTCCGATGAGTGTCCGGCTACGCATTTAAGCAGATTCACCAAAGTTTGCCGTGCGAACAACGCGGCCTCCGTCGAGATTATGATGAGAATCTTTCCGGTAACGTTACAGGGCGAGGCTCTGCTTTGGTACGACTTGAACATTGAACCGTACCCTCCAATTTCTTGGGAAGAATTGAAGTCTTCGTTCTTGGACGCGTATAACAAAATCGAATTGGCTGAGCAGTTGCGATCGGAGCTTATGACGATCAGTCAACGGCCGGAGGAGAATGTTCGTTCGTATTTTCTGAGGCTGCAGTTGATCTTGAAGAAATGGCCGCCGGGAAACGAACTTTCCGATGGGTTTTTGAAAGCGATTTTCATGGATGGATTGAGGGAAGAGTTTAAGGAATGGATGATTCCACAGAAACCGGATTCTCTGAACGAGGCGTTGCGACTTGCATTTGGTTTCGAACAAGTTATGGTCATCCGTACTTCCGGCGGAAAGCGGTTTCTCCGGTGTGGGTTTTGTGAGGGGCGGCATGAGGAATTGGTTTGTGAGGTTAGGGAAAGAATGAGACGGTTGTGGAAGAGTAGGGAAAAGAAGAATGGCGGCGATATGGAGGAGAGCGACGGGCATAATACGGCGGCAACGGCGGCGGAGCTTGCGCGGTCGGTTTCGGCGATAAGCAGAAATGAAGCGGAGGTTGGGAAGGACGGCGGGGAAATGGCGGGTTTGAAGAAGAAAGGTCCGTGTCAGTGCTGGAAGCATCAGTGTGGGATGAAGAAATTGGATCGAAACCTTAGCATGCTATCAAAAACTTCTAAACCCTAA

mRNA sequence

ATGGCGCGAAAACTCAGGCGTTCACCGCCGCCGTTGCGGCGGCGTAACTACGCCACCGATTATGATGCTTCCCCATCTCAATCTCTCAACGCATCAAACGAAGACGACTACGACGCTTCTGAATCTAATAACTTCCAAACCAGCGGCCACAAATCAAAATCCCTAGAAATCAATGAAGAATCCGCCACGAATAGTCCAACGAATTTACAGAGTCCAAACGCCGCCGCAACAGTATTTCCATACATTAACATTGCACCGTTGCCTGTTTTTCACGGCGGCTCCGATGAGTGTCCGGCTACGCATTTAAGCAGATTCACCAAAGTTTGCCGTGCGAACAACGCGGCCTCCGTCGAGATTATGATGAGAATCTTTCCGGTAACGTTACAGGGCGAGGCTCTGCTTTGGTACGACTTGAACATTGAACCGTACCCTCCAATTTCTTGGGAAGAATTGAAGTCTTCGTTCTTGGACGCGTATAACAAAATCGAATTGGCTGAGCAGTTGCGATCGGAGCTTATGACGATCAGTCAACGGCCGGAGGAGAATGTTCGTTCGTATTTTCTGAGGCTGCAGTTGATCTTGAAGAAATGGCCGCCGGGAAACGAACTTTCCGATGGGTTTTTGAAAGCGATTTTCATGGATGGATTGAGGGAAGAGTTTAAGGAATGGATGATTCCACAGAAACCGGATTCTCTGAACGAGGCGTTGCGACTTGCATTTGGTTTCGAACAAGTTATGGTCATCCGTACTTCCGGCGGAAAGCGGTTTCTCCGGTGTGGGTTTTGTGAGGGGCGGCATGAGGAATTGGTTTGTGAGGTTAGGGAAAGAATGAGACGGTTGTGGAAGAGTAGGGAAAAGAAGAATGGCGGCGATATGGAGGAGAGCGACGGGCATAATACGGCGGCAACGGCGGCGGAGCTTGCGCGGTCGGTTTCGGCGATAAGCAGAAATGAAGCGGAGGTTGGGAAGGACGGCGGGGAAATGGCGGGTTTGAAGAAGAAAGGTCCGTGTCAGTGCTGGAAGCATCAGTGTGGGATGAAGAAATTGGATCGAAACCTTAGCATGCTATCAAAAACTTCTAAACCCTAA

Coding sequence (CDS)

ATGGCGCGAAAACTCAGGCGTTCACCGCCGCCGTTGCGGCGGCGTAACTACGCCACCGATTATGATGCTTCCCCATCTCAATCTCTCAACGCATCAAACGAAGACGACTACGACGCTTCTGAATCTAATAACTTCCAAACCAGCGGCCACAAATCAAAATCCCTAGAAATCAATGAAGAATCCGCCACGAATAGTCCAACGAATTTACAGAGTCCAAACGCCGCCGCAACAGTATTTCCATACATTAACATTGCACCGTTGCCTGTTTTTCACGGCGGCTCCGATGAGTGTCCGGCTACGCATTTAAGCAGATTCACCAAAGTTTGCCGTGCGAACAACGCGGCCTCCGTCGAGATTATGATGAGAATCTTTCCGGTAACGTTACAGGGCGAGGCTCTGCTTTGGTACGACTTGAACATTGAACCGTACCCTCCAATTTCTTGGGAAGAATTGAAGTCTTCGTTCTTGGACGCGTATAACAAAATCGAATTGGCTGAGCAGTTGCGATCGGAGCTTATGACGATCAGTCAACGGCCGGAGGAGAATGTTCGTTCGTATTTTCTGAGGCTGCAGTTGATCTTGAAGAAATGGCCGCCGGGAAACGAACTTTCCGATGGGTTTTTGAAAGCGATTTTCATGGATGGATTGAGGGAAGAGTTTAAGGAATGGATGATTCCACAGAAACCGGATTCTCTGAACGAGGCGTTGCGACTTGCATTTGGTTTCGAACAAGTTATGGTCATCCGTACTTCCGGCGGAAAGCGGTTTCTCCGGTGTGGGTTTTGTGAGGGGCGGCATGAGGAATTGGTTTGTGAGGTTAGGGAAAGAATGAGACGGTTGTGGAAGAGTAGGGAAAAGAAGAATGGCGGCGATATGGAGGAGAGCGACGGGCATAATACGGCGGCAACGGCGGCGGAGCTTGCGCGGTCGGTTTCGGCGATAAGCAGAAATGAAGCGGAGGTTGGGAAGGACGGCGGGGAAATGGCGGGTTTGAAGAAGAAAGGTCCGTGTCAGTGCTGGAAGCATCAGTGTGGGATGAAGAAATTGGATCGAAACCTTAGCATGCTATCAAAAACTTCTAAACCCTAA

Protein sequence

MARKLRRSPPPLRRRNYATDYDASPSQSLNASNEDDYDASESNNFQTSGHKSKSLEINEESATNSPTNLQSPNAAATVFPYINIAPLPVFHGGSDECPATHLSRFTKVCRANNAASVEIMMRIFPVTLQGEALLWYDLNIEPYPPISWEELKSSFLDAYNKIELAEQLRSELMTISQRPEENVRSYFLRLQLILKKWPPGNELSDGFLKAIFMDGLREEFKEWMIPQKPDSLNEALRLAFGFEQVMVIRTSGGKRFLRCGFCEGRHEELVCEVRERMRRLWKSREKKNGGDMEESDGHNTAATAAELARSVSAISRNEAEVGKDGGEMAGLKKKGPCQCWKHQCGMKKLDRNLSMLSKTSKP
Homology
BLAST of CmaCh02G000800 vs. ExPASy TrEMBL
Match: A0A7N2R9A7 (Retrotrans_gag domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 3.5e-83
Identity = 190/376 (50.53%), Postives = 245/376 (65.16%), Query Frame = 0

Query: 15  RNYATDYDASPSQSLNASNEDDYDASESNNFQTSGHKSKSLEINEESATNSP-------- 74
           R YA   D     SL+ SNE+ Y+       + +   +    I+ ES TN+P        
Sbjct: 30  REYAYKDDNYSDASLSESNENGYEYE-----RPAKDDNDDAYISSESETNAPGDRFSSQL 89

Query: 75  --TNLQSPNAAATVFP-------------------YINIAPLPVFHGGSDECPATHLSRF 134
              + QS N + T FP                   Y+NIAP+P+FHG ++ECP  H+SRF
Sbjct: 90  RDPDSQSINLSTTAFPNSTSNFPKISQPPSTHLASYMNIAPIPIFHGNTNECPVKHVSRF 149

Query: 135 TKVCRANNAASVEIMMRIFPVTLQGEALLWYDLNIEPYPPISWEELKSSFLDAYNKIELA 194
            KVC ANN ++ ++MMRIFPVTL+ EA LWYDLNIEPYP ++WEE+KSSFL AY+KIE+ 
Sbjct: 150 AKVCVANNVSTTDMMMRIFPVTLEDEAALWYDLNIEPYPSLTWEEIKSSFLHAYHKIEVV 209

Query: 195 EQLRSELMTISQRPEENVRSYFLRLQLILKKWPPGNELSDGFLKAIFMDGLREEFKEWMI 254
           +QLRSELM I+Q  EE+VRSYFLRLQ ILK+W P + +SDG LK +F+DGLREEF+ W+I
Sbjct: 210 DQLRSELMMINQGDEESVRSYFLRLQWILKQW-PDHGISDGLLKGVFIDGLREEFRGWII 269

Query: 255 PQKPDSLNEALRLAFGFEQVMVIRTSGGKRFLRCGFCEGRHEELVCEVRERMRRLWK-SR 314
           PQKPDSL+EALRLAFGFEQV  IR    ++ L+CGFC+G HEE  CEVRERMR+LW+ S+
Sbjct: 270 PQKPDSLHEALRLAFGFEQVKSIRAV--RKELKCGFCDGMHEERDCEVRERMRKLWRESK 329

Query: 315 EKKNGGDMEESDGHNTAATAAELARSVSAISRNEAEVGKDG-GEMAGLK--KKGPCQCWK 358
           EK+    + +S G +      EL RSVS  +   + VGK+  GE AG    KK   Q  K
Sbjct: 330 EKEEAVVLAKSTGGDD-ELGKELVRSVSIGA--SSSVGKNNEGEEAGFMDGKKNQFQYGK 389

BLAST of CmaCh02G000800 vs. ExPASy TrEMBL
Match: A5C7E6 (Retrotrans_gag domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_007470 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 1.3e-82
Identity = 184/373 (49.33%), Postives = 238/373 (63.81%), Query Frame = 0

Query: 6   RRSPPPLRRRNYATDY-DASPSQSLNASNEDDYDASE--SNNFQTSGHKS---------- 65
           R+    + +  +  DY + SPSQS    +E++ D     ++N   SG  +          
Sbjct: 147 RKHHRKIXKEKFYDDYTEQSPSQSPYEFDEEEEDEQSXYTDNESASGTNAPGDQFSLPAL 206

Query: 66  ----KSLEINEESATNSPTNLQSPNAAATVFPYINIAPLPVFHGGSDECPATHLSRFTKV 125
               K       S+ NS +N  +P   ++   YINIAPLP+F G SDECP THLSRFTKV
Sbjct: 207 ESIPKGKSFRPSSSLNSSSNSLNPFXQSS---YINIAPLPIFRGSSDECPVTHLSRFTKV 266

Query: 126 CRANNAASVEIMMRIFPVTLQGEALLWYDLNIEPYPPISWEELKSSFLDAYNKIELAEQL 185
           CRANN +SVE++MRIFPVTL GEA LWYDLNIEPY  +SWEE+KSSFL AY++  L ++L
Sbjct: 267 CRANNVSSVEMIMRIFPVTLDGEAALWYDLNIEPYSSLSWEEIKSSFLQAYHRXGLTDEL 326

Query: 186 RSELMTISQRPEENVRSYFLRLQLILKKWPPGNELSDGFLKAIFMDGLREEFKEWMIPQK 245
           RSELM I+Q  EE+VRSYFLRLQ ILK+W P + L DG L+ IF+DGLR++F++W+IPQK
Sbjct: 327 RSELMMINQGTEESVRSYFLRLQWILKRW-PDHGLPDGLLEGIFIDGLRKDFQDWIIPQK 386

Query: 246 PDSLNEALRLAFGFEQVMVIRTSGGKRFLRCGFCEGRHEELVCEVRERMRRLWKSREKK- 305
           P SLNEALRLAF +E+V  IR   G R   CGFC G H+E  CE+RERMR LW   +K+ 
Sbjct: 387 PSSLNEALRLAFAWEKVQSIR---GGREKECGFCSGGHDEEGCEIRERMRXLWVKSKKQT 446

Query: 306 ---NGGDMEESDGHNTAATAAELARSVSAISRNEAEVGKDGGEMAGLKKKGPCQCWKHQC 358
              +G  + + DG         +      + +NE E G++G    G KKK  CQC KHQC
Sbjct: 447 RDYSGRIVNDEDGEKEFERRVSVGGESRBVGKNEEE-GEEG--XMGWKKKSQCQCGKHQC 506

BLAST of CmaCh02G000800 vs. ExPASy TrEMBL
Match: B9RWN5 (Retrotrans_gag domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_1022950 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 6.6e-82
Identity = 178/367 (48.50%), Postives = 237/367 (64.58%), Query Frame = 0

Query: 1   MARKLRRSPPPLR---RRNYATDYDASPSQSLNASNEDDYDASESNNFQTSGHKSKSLEI 60
           M RK + S   L+   R +Y+     SPSQS   SN+DD +  + +  Q    +S +  +
Sbjct: 1   MTRKAKNSRKSLQFSSRHDYSE--STSPSQSPYDSNDDDDEIEDDDEEQPIISESVTNSL 60

Query: 61  NEESATNSPTNLQSPNAAATVFPYINIAPLPVFHGGSDECPATHLSRFTKVCRANNAASV 120
           N +  ++S  +   PN +     YIN+APLPVFHG S+ECP  HLSRF KVCRANNA+S 
Sbjct: 61  NADQLSSSSYSNSQPNNS-----YINVAPLPVFHGNSNECPIAHLSRFVKVCRANNASST 120

Query: 121 EIMMRIFPVTLQGEALLWYDLNIEPYPPISWEELKSSFLDAYNKIELAEQLRSELMTISQ 180
           ++MMRIFPVTL+ EA LWYDLNI+PYP +SW+E+  SFL+AY +I+L +QLRS+LM ++Q
Sbjct: 121 DMMMRIFPVTLENEAALWYDLNIQPYPSLSWDEIMLSFLEAYQRIKLVDQLRSDLMMLNQ 180

Query: 181 RPEENVRSYFLRLQLILKKWPPGNELSDGFLKAIFMDGLREEFKEWMIPQKPDSLNEALR 240
             +E+VRSYF+RLQ ILK+W P + LSD  LK IF+DGL   FK+W+IP KP+SLNEALR
Sbjct: 181 GSDESVRSYFMRLQWILKRW-PDHGLSDNMLKWIFIDGLMGNFKDWIIPHKPNSLNEALR 240

Query: 241 LAFGFEQVMVIRTSGGKRFLRCGFCEGRHEELVCEVRERMRRLWKSREKKNGGDMEESDG 300
           LAF FEQV  IR +  ++ ++CGFCEG HEE  C VRE+MR L+++ +KK     E S+ 
Sbjct: 241 LAFSFEQVKSIRGT-KQKVVKCGFCEGSHEENCCVVREKMRELFRNSKKKMMIPKEASER 300

Query: 301 HNTAATAAELARSVSAISRNEAEVGKDGGEMAGLKK----KGPCQCWKHQCGMKKLDRNL 360
                  AE           E +VG D  E   L      K PCQC KH C MKK +R+ 
Sbjct: 301 SEAGNEMAENKDGKEGEEEEEVDVGDDKEEKRMLSSSKTGKSPCQCSKHHCWMKKFERSN 358

BLAST of CmaCh02G000800 vs. ExPASy TrEMBL
Match: W9R9S0 (Retrotrans_gag domain-containing protein OS=Morus notabilis OX=981085 GN=L484_004813 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 1.2e-80
Identity = 184/365 (50.41%), Postives = 228/365 (62.47%), Query Frame = 0

Query: 12  LRRRNYATDYDASPSQSLNASNEDDYDASESNNFQTSGHKSKSLEINEE----SATNSPT 71
           +R  N +T++D   +   +  +  D     + N  +    S S  IN      SA++SP 
Sbjct: 39  VRSPNDSTEFDQPENDDDDNDDASDAPTDSATNPLSDQFSSVSERINARKKSCSASHSPI 98

Query: 72  --NLQSPNAAATVFPYINIAPLPVFHGGSDECPATHLSRFTKVCRANNAASVEIMMRIFP 131
               Q P +      Y+NIA  P+F GGS+ECP  HLSRF KVCRANN +S+++MM+IFP
Sbjct: 99  LHLPQQPVSQTGYNSYMNIAQFPIFRGGSEECPFAHLSRFAKVCRANNVSSIDMMMKIFP 158

Query: 132 VTLQGEALLWYDLNIEPYPPISWEELKSSFLDAYNKIELAEQLRSELMTISQRPEENVRS 191
           VTL+ EA LWYDLN+EPY  +SWEE+KSSF  AY KIEL EQLRS+LMTI+Q   E+VRS
Sbjct: 159 VTLEDEAALWYDLNVEPYEELSWEEIKSSFYHAYGKIELTEQLRSQLMTINQGDAESVRS 218

Query: 192 YFLRLQLILKKWPPGNELSDGFLKAIFMDGLREEFKEWMIPQKPDSLNEALRLAFGFEQV 251
           YFLRLQ ILKKWP  + LSD  LK +F+DGLR +F+EWM PQKP SLN+ALRLAF FEQV
Sbjct: 219 YFLRLQWILKKWPE-HGLSDDLLKGVFVDGLRGDFQEWMAPQKPGSLNKALRLAFCFEQV 278

Query: 252 MVIRTSGGKRFLRCGFCEGRHEELVCEVRERMRRLWKSREKKN--GGDMEESDGHNTAAT 311
             IR       ++CGFC G HEE  CEVRERMR LW    K +  G  M E +    +  
Sbjct: 279 KSIRNVRRNASVKCGFCGGLHEERGCEVRERMRELWLKSNKDDGLGKGMLERNLIEKSEG 338

Query: 312 AAELARSVS-AISRNEAEVGK------DG----GEMAGLKKKGPCQCWKHQCGMKKLDRN 358
             EL RSVS A SR+   VGK      DG     E+   KK+  CQC KHQC  K ++RN
Sbjct: 339 VKELGRSVSMATSRSTCVVGKNDQVEEDGKEEEDELGSKKKRSQCQCGKHQCWKKNIERN 398

BLAST of CmaCh02G000800 vs. ExPASy TrEMBL
Match: A0A061DJI4 (Retrotrans_gag domain-containing protein OS=Theobroma cacao OX=3641 GN=TCM_001704 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.6e-80
Identity = 174/344 (50.58%), Postives = 229/344 (66.57%), Query Frame = 0

Query: 27  QSLNASNEDDYDAS--ESNNFQTSGHKSKSL----EINEESATNSPTN--LQSPNAAATV 86
           Q  N ++ DD+DAS  +S +   + +  K+L     ++  ++ NS +N  + S +     
Sbjct: 62  QPRNENDYDDFDASDFQSESMTNAPNAPKTLLRGNGLSAAASLNSVSNSAIWSRSNLIEA 121

Query: 87  FPYINIAPLPVFHGGSDECPATHLSRFTKVCRANNAASVEIMMRIFPVTLQGEALLWYDL 146
             YINIAPLP+F G   +CP THLSRF KVCRANN +SV++MMRIFPVTL+ EA LWYDL
Sbjct: 122 TSYINIAPLPIFQGSPSDCPVTHLSRFAKVCRANNVSSVDMMMRIFPVTLENEAGLWYDL 181

Query: 147 NIEPYPPISWEELKSSFLDAYNKIELAEQLRSELMTISQRPEENVRSYFLRLQLILKKWP 206
           NIEPYP + WEE+KSSFL AY+K ++ EQLR ELM I+Q  EE VRSYFLRLQ  L++W 
Sbjct: 182 NIEPYPSLRWEEIKSSFLQAYHKTQVTEQLRHELMMINQGSEERVRSYFLRLQWSLQRW- 241

Query: 207 PGNELSDGFLKAIFMDGLREEFKEWMIPQKPDSLNEALRLAFGFEQVMVIRTSGGKRFLR 266
           P + + +  LK IF+DGLRE+F++W++PQKPDSL EALRLA  FEQ+  I+ S  K+ L+
Sbjct: 242 PDHGIPENLLKEIFVDGLREDFQDWIVPQKPDSLVEALRLAIAFEQLKSIKIS-RKKDLK 301

Query: 267 CGFCEGRHEELVCEVRERMRRLWKSREKKNGGDMEESDGHNTAATAAELARSVSAISRNE 326
           C FCEG HEE  C+VRERM+ LW+  + K   D  E +  N A      +   SA  R E
Sbjct: 302 CDFCEGSHEERNCQVRERMKELWRKTKDKEWMDSSEKNQSNEAVNE---SAEGSAEDRIE 361

Query: 327 AEVGKDGGEMAG--LKKKGPCQCWKHQCGMKKLDRNLSMLSKTS 361
            E   +G  ++G   KKK PCQC KHQC  K+LDR  S++S+ S
Sbjct: 362 EENVVEGEMLSGRKQKKKSPCQCCKHQCWKKQLDRTNSLVSRNS 400

BLAST of CmaCh02G000800 vs. NCBI nr
Match: KAG6604769.1 (hypothetical protein SDJN03_02086, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 686.8 bits (1771), Expect = 1.0e-193
Identity = 347/362 (95.86%), Postives = 349/362 (96.41%), Query Frame = 0

Query: 1   MARKLRRSPPPLRRRNYATDYDASPSQSLNASNEDDYDASESNNFQTSGHKSKSLEINEE 60
           MA KLRRSPPPLRRRNYATDYDAS SQSL+ASNEDDYDASESNNFQTSGHKSKSLEINEE
Sbjct: 1   MAPKLRRSPPPLRRRNYATDYDASLSQSLDASNEDDYDASESNNFQTSGHKSKSLEINEE 60

Query: 61  SATNSPTNLQSPNAAATVFPYINIAPLPVFHGGSDECPATHLSRFTKVCRANNAASVEIM 120
           SATNSPTNLQSPNAAATVFPYINIAPLPVFHGGSDECPATHLSRF KVCRANNAASVEIM
Sbjct: 61  SATNSPTNLQSPNAAATVFPYINIAPLPVFHGGSDECPATHLSRFAKVCRANNAASVEIM 120

Query: 121 MRIFPVTLQGEALLWYDLNIEPYPPISWEELKSSFLDAYNKIELAEQLRSELMTISQRPE 180
           MRIFPVTLQGEALLWYDLNIEPYPPISWEELKSSFLDAYNKIELAEQLRSELMTISQRPE
Sbjct: 121 MRIFPVTLQGEALLWYDLNIEPYPPISWEELKSSFLDAYNKIELAEQLRSELMTISQRPE 180

Query: 181 ENVRSYFLRLQLILKKWPPGNELSDGFLKAIFMDGLREEFKEWMIPQKPDSLNEALRLAF 240
           ENVRSYFLRLQLILKKWPPGNELSDGFLKAIFMDGLREEFKEWMIPQKPDSLNEALRLAF
Sbjct: 181 ENVRSYFLRLQLILKKWPPGNELSDGFLKAIFMDGLREEFKEWMIPQKPDSLNEALRLAF 240

Query: 241 GFEQVMVIRTSGGKRFLRCGFCEGRHEELVCEVRERMRRLWKSREKKNGGDMEESDGHNT 300
           G EQV VIRTSGGKRFLRCGFCEGRHEELVCEVRERMRRLWKSREKKNGGDM ES+GHNT
Sbjct: 241 GLEQVTVIRTSGGKRFLRCGFCEGRHEELVCEVRERMRRLWKSREKKNGGDMAESEGHNT 300

Query: 301 AATAAELARSVSAISRNEAEVGKDGGEMAGLKKKGPCQCWKHQCGMKKLDRNLSMLSKTS 360
               AEL RSVSAISRNEAEVGKDGGEM GLKKKG CQCWKHQCGMKKLDRNLSMLSKTS
Sbjct: 301 ----AELVRSVSAISRNEAEVGKDGGEMVGLKKKGQCQCWKHQCGMKKLDRNLSMLSKTS 358

Query: 361 KP 363
           KP
Sbjct: 361 KP 358

BLAST of CmaCh02G000800 vs. NCBI nr
Match: CAN62167.1 (hypothetical protein VITISV_007470 [Vitis vinifera])

HSP 1 Score: 317.8 bits (813), Expect = 1.2e-82
Identity = 184/373 (49.33%), Postives = 239/373 (64.08%), Query Frame = 0

Query: 6   RRSPPPLRRRNYATDY-DASPSQSLNASNEDDYDASE--SNNFQTSGHKS---------- 65
           R+    + +  +  DY + SPSQS    +E++ D     ++N   SG  +          
Sbjct: 147 RKHHRKIJKEKFYDDYTEQSPSQSPYEFDEEEEDEQSXYTDNESASGTNAPGDQFSLPAL 206

Query: 66  ----KSLEINEESATNSPTNLQSPNAAATVFPYINIAPLPVFHGGSDECPATHLSRFTKV 125
               K       S+ NS +N  +P   ++   YINIAPLP+F G SDECP THLSRFTKV
Sbjct: 207 ESIPKGKSFRPSSSLNSSSNSLNPFXQSS---YINIAPLPIFRGSSDECPVTHLSRFTKV 266

Query: 126 CRANNAASVEIMMRIFPVTLQGEALLWYDLNIEPYPPISWEELKSSFLDAYNKIELAEQL 185
           CRANN +SVE++MRIFPVTL GEA LWYDLNIEPY  +SWEE+KSSFL AY+++ L ++L
Sbjct: 267 CRANNVSSVEMIMRIFPVTLDGEAALWYDLNIEPYSSLSWEEIKSSFLQAYHRJGLTDEL 326

Query: 186 RSELMTISQRPEENVRSYFLRLQLILKKWPPGNELSDGFLKAIFMDGLREEFKEWMIPQK 245
           RSELM I+Q  EE+VRSYFLRLQ ILK+W P + L DG L+ IF+DGLR++F++W+IPQK
Sbjct: 327 RSELMMINQGTEESVRSYFLRLQWILKRW-PDHGLPDGLLEGIFIDGLRKDFQDWIIPQK 386

Query: 246 PDSLNEALRLAFGFEQVMVIRTSGGKRFLRCGFCEGRHEELVCEVRERMRRLWKSREKK- 305
           P SLNEALRLAF +E+V  IR   G R   CGFC G H+E  CE+RERMR LW   +K+ 
Sbjct: 387 PSSLNEALRLAFAWEKVQSIR---GGREKECGFCSGGHDEEGCEIRERMRXLWVKSKKQT 446

Query: 306 ---NGGDMEESDGHNTAATAAELARSVSAISRNEAEVGKDGGEMAGLKKKGPCQCWKHQC 358
              +G  + + DG         +      + +NE E G++G    G KKK  CQC KHQC
Sbjct: 447 RDYSGRIVNDEDGEKEFERRVSVGGESRBVGKNEEE-GEEG--XMGWKKKSQCQCGKHQC 506

BLAST of CmaCh02G000800 vs. NCBI nr
Match: EEF44287.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 314.3 bits (804), Expect = 1.4e-81
Identity = 178/367 (48.50%), Postives = 237/367 (64.58%), Query Frame = 0

Query: 1   MARKLRRSPPPLR---RRNYATDYDASPSQSLNASNEDDYDASESNNFQTSGHKSKSLEI 60
           M RK + S   L+   R +Y+     SPSQS   SN+DD +  + +  Q    +S +  +
Sbjct: 1   MTRKAKNSRKSLQFSSRHDYSE--STSPSQSPYDSNDDDDEIEDDDEEQPIISESVTNSL 60

Query: 61  NEESATNSPTNLQSPNAAATVFPYINIAPLPVFHGGSDECPATHLSRFTKVCRANNAASV 120
           N +  ++S  +   PN +     YIN+APLPVFHG S+ECP  HLSRF KVCRANNA+S 
Sbjct: 61  NADQLSSSSYSNSQPNNS-----YINVAPLPVFHGNSNECPIAHLSRFVKVCRANNASST 120

Query: 121 EIMMRIFPVTLQGEALLWYDLNIEPYPPISWEELKSSFLDAYNKIELAEQLRSELMTISQ 180
           ++MMRIFPVTL+ EA LWYDLNI+PYP +SW+E+  SFL+AY +I+L +QLRS+LM ++Q
Sbjct: 121 DMMMRIFPVTLENEAALWYDLNIQPYPSLSWDEIMLSFLEAYQRIKLVDQLRSDLMMLNQ 180

Query: 181 RPEENVRSYFLRLQLILKKWPPGNELSDGFLKAIFMDGLREEFKEWMIPQKPDSLNEALR 240
             +E+VRSYF+RLQ ILK+W P + LSD  LK IF+DGL   FK+W+IP KP+SLNEALR
Sbjct: 181 GSDESVRSYFMRLQWILKRW-PDHGLSDNMLKWIFIDGLMGNFKDWIIPHKPNSLNEALR 240

Query: 241 LAFGFEQVMVIRTSGGKRFLRCGFCEGRHEELVCEVRERMRRLWKSREKKNGGDMEESDG 300
           LAF FEQV  IR +  ++ ++CGFCEG HEE  C VRE+MR L+++ +KK     E S+ 
Sbjct: 241 LAFSFEQVKSIRGT-KQKVVKCGFCEGSHEENCCVVREKMRELFRNSKKKMMIPKEASER 300

Query: 301 HNTAATAAELARSVSAISRNEAEVGKDGGEMAGLKK----KGPCQCWKHQCGMKKLDRNL 360
                  AE           E +VG D  E   L      K PCQC KH C MKK +R+ 
Sbjct: 301 SEAGNEMAENKDGKEGEEEEEVDVGDDKEEKRMLSSSKTGKSPCQCSKHHCWMKKFERSN 358

BLAST of CmaCh02G000800 vs. NCBI nr
Match: EXB78111.1 (hypothetical protein L484_004813 [Morus notabilis])

HSP 1 Score: 310.1 bits (793), Expect = 2.6e-80
Identity = 184/365 (50.41%), Postives = 228/365 (62.47%), Query Frame = 0

Query: 12  LRRRNYATDYDASPSQSLNASNEDDYDASESNNFQTSGHKSKSLEINEE----SATNSPT 71
           +R  N +T++D   +   +  +  D     + N  +    S S  IN      SA++SP 
Sbjct: 39  VRSPNDSTEFDQPENDDDDNDDASDAPTDSATNPLSDQFSSVSERINARKKSCSASHSPI 98

Query: 72  --NLQSPNAAATVFPYINIAPLPVFHGGSDECPATHLSRFTKVCRANNAASVEIMMRIFP 131
               Q P +      Y+NIA  P+F GGS+ECP  HLSRF KVCRANN +S+++MM+IFP
Sbjct: 99  LHLPQQPVSQTGYNSYMNIAQFPIFRGGSEECPFAHLSRFAKVCRANNVSSIDMMMKIFP 158

Query: 132 VTLQGEALLWYDLNIEPYPPISWEELKSSFLDAYNKIELAEQLRSELMTISQRPEENVRS 191
           VTL+ EA LWYDLN+EPY  +SWEE+KSSF  AY KIEL EQLRS+LMTI+Q   E+VRS
Sbjct: 159 VTLEDEAALWYDLNVEPYEELSWEEIKSSFYHAYGKIELTEQLRSQLMTINQGDAESVRS 218

Query: 192 YFLRLQLILKKWPPGNELSDGFLKAIFMDGLREEFKEWMIPQKPDSLNEALRLAFGFEQV 251
           YFLRLQ ILKKWP  + LSD  LK +F+DGLR +F+EWM PQKP SLN+ALRLAF FEQV
Sbjct: 219 YFLRLQWILKKWPE-HGLSDDLLKGVFVDGLRGDFQEWMAPQKPGSLNKALRLAFCFEQV 278

Query: 252 MVIRTSGGKRFLRCGFCEGRHEELVCEVRERMRRLWKSREKKN--GGDMEESDGHNTAAT 311
             IR       ++CGFC G HEE  CEVRERMR LW    K +  G  M E +    +  
Sbjct: 279 KSIRNVRRNASVKCGFCGGLHEERGCEVRERMRELWLKSNKDDGLGKGMLERNLIEKSEG 338

Query: 312 AAELARSVS-AISRNEAEVGK------DG----GEMAGLKKKGPCQCWKHQCGMKKLDRN 358
             EL RSVS A SR+   VGK      DG     E+   KK+  CQC KHQC  K ++RN
Sbjct: 339 VKELGRSVSMATSRSTCVVGKNDQVEEDGKEEEDELGSKKKRSQCQCGKHQCWKKNIERN 398

BLAST of CmaCh02G000800 vs. NCBI nr
Match: EOX92844.1 (Uncharacterized protein TCM_001704 [Theobroma cacao])

HSP 1 Score: 309.7 bits (792), Expect = 3.4e-80
Identity = 174/344 (50.58%), Postives = 229/344 (66.57%), Query Frame = 0

Query: 27  QSLNASNEDDYDAS--ESNNFQTSGHKSKSL----EINEESATNSPTN--LQSPNAAATV 86
           Q  N ++ DD+DAS  +S +   + +  K+L     ++  ++ NS +N  + S +     
Sbjct: 62  QPRNENDYDDFDASDFQSESMTNAPNAPKTLLRGNGLSAAASLNSVSNSAIWSRSNLIEA 121

Query: 87  FPYINIAPLPVFHGGSDECPATHLSRFTKVCRANNAASVEIMMRIFPVTLQGEALLWYDL 146
             YINIAPLP+F G   +CP THLSRF KVCRANN +SV++MMRIFPVTL+ EA LWYDL
Sbjct: 122 TSYINIAPLPIFQGSPSDCPVTHLSRFAKVCRANNVSSVDMMMRIFPVTLENEAGLWYDL 181

Query: 147 NIEPYPPISWEELKSSFLDAYNKIELAEQLRSELMTISQRPEENVRSYFLRLQLILKKWP 206
           NIEPYP + WEE+KSSFL AY+K ++ EQLR ELM I+Q  EE VRSYFLRLQ  L++W 
Sbjct: 182 NIEPYPSLRWEEIKSSFLQAYHKTQVTEQLRHELMMINQGSEERVRSYFLRLQWSLQRW- 241

Query: 207 PGNELSDGFLKAIFMDGLREEFKEWMIPQKPDSLNEALRLAFGFEQVMVIRTSGGKRFLR 266
           P + + +  LK IF+DGLRE+F++W++PQKPDSL EALRLA  FEQ+  I+ S  K+ L+
Sbjct: 242 PDHGIPENLLKEIFVDGLREDFQDWIVPQKPDSLVEALRLAIAFEQLKSIKIS-RKKDLK 301

Query: 267 CGFCEGRHEELVCEVRERMRRLWKSREKKNGGDMEESDGHNTAATAAELARSVSAISRNE 326
           C FCEG HEE  C+VRERM+ LW+  + K   D  E +  N A      +   SA  R E
Sbjct: 302 CDFCEGSHEERNCQVRERMKELWRKTKDKEWMDSSEKNQSNEAVNE---SAEGSAEDRIE 361

Query: 327 AEVGKDGGEMAG--LKKKGPCQCWKHQCGMKKLDRNLSMLSKTS 361
            E   +G  ++G   KKK PCQC KHQC  K+LDR  S++S+ S
Sbjct: 362 EENVVEGEMLSGRKQKKKSPCQCCKHQCWKKQLDRTNSLVSRNS 400

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7N2R9A73.5e-8350.53Retrotrans_gag domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A5C7E61.3e-8249.33Retrotrans_gag domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_00... [more]
B9RWN56.6e-8248.50Retrotrans_gag domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_102... [more]
W9R9S01.2e-8050.41Retrotrans_gag domain-containing protein OS=Morus notabilis OX=981085 GN=L484_00... [more]
A0A061DJI41.6e-8050.58Retrotrans_gag domain-containing protein OS=Theobroma cacao OX=3641 GN=TCM_00170... [more]
Match NameE-valueIdentityDescription
KAG6604769.11.0e-19395.86hypothetical protein SDJN03_02086, partial [Cucurbita argyrosperma subsp. sorori... [more]
CAN62167.11.2e-8249.33hypothetical protein VITISV_007470 [Vitis vinifera][more]
EEF44287.11.4e-8148.50conserved hypothetical protein [Ricinus communis][more]
EXB78111.12.6e-8050.41hypothetical protein L484_004813 [Morus notabilis][more]
EOX92844.13.4e-8050.58Uncharacterized protein TCM_001704 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 123..218
e-value: 1.2E-9
score: 38.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..69
NoneNo IPR availablePANTHERPTHR33223FAMILY NOT NAMEDcoord: 21..356

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G000800.1CmaCh02G000800.1mRNA