CmaCh02G000770 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G000770
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr02: 372971 .. 375125 (-)
RNA-Seq ExpressionCmaCh02G000770
SyntenyCmaCh02G000770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATTATATTTGGTAAGTTGGTAATTAAGCCAAAGTTCTAGAGGATAATAGAATTTTTCATTTCCTCTTGTATTGACACGTGGAAAATATTAAGGCTATAGCAATTTCACCCACCTACGCTTCCACGTTTCTCTCTCTCTTCTCTCTCTCATCCTTGCTTTTCCGTCCCGGCATTCTTACTTTTGCGCCTCCGAAAGCCGAACTTGTGATCTTCCTGCAAGGTTTAATCCCCTTCTTAAGCTTTAGGCTTCTAGGTATCTGGGTTTTGTCCCTATTCTGCAATTACAAAGTTCTGAAGTTTCGAGGATCGCCTAAAGGTTTTTCTCTCTTCATCGTCTTGTTTTTGTCTTTCTATTGTTTATGAACTCTTTTGTTTTTCCTTGACATCTGAATTTTGTTTGATTGAGTTTCCTTGATCATCTGTTTTTAGTTATCTCGGAGTTGTGTTATTGAATTGCAGTCCTCTTTGCTGATAGAAATGTAGTTTTTGAGATGGGTTTTTAATGATCAGTGTGAATTTTGCTGGAAATTTCTCGAAATTTCTTATGAAGCTTTGTTTTTATCATTTTTCTTTAGTGGATTGGCGATTTTAGGCGCTGATAAATTTGAAGAACCAAAATAATTTATGGCTTGAATTTGTAAACTAATGAGGATGAGAGTTGAGAGTGAGTTTTCTGTACAATTACTGCAGCTACCTTGATTATTTTCAAGATTTTGGTGATTTGAATTTGATGCTCTGGTTGAGGCAAAACGTCTGCTGGTGTTCTGTTTATATGCCTTGAGGAACTAATGGAAGGTACTTTGGTCTATGCAAATTTTGGGGCTGGTTCTTCTTCCTCCCAATCCATTTCCCATAGCAATGTGTTTCCTGACTCCTTCAGACTCTCGAATGTCGAAAAATGTTTACCAAAACTGAATGTATCTGTAACGGCTCAGCCCCACTGCTAGCCGATATTGTCCTCTTTGGACTTTCCCTCAAGGTTTTTAAAATGGGTCTCCTAGGGAAAGGTTTCCACACCCTTGTAAAGGGTGTTTTGTTCTCCTCCCCAACCGATGTGGGATGTCACAATCCACCCCCCATTCAGGGCCCAGCGTTCTCGTTGGCACTCGTTCCTTTCTCCAATCAATGTGGGAGCCCCACTAAATCCACCCCCTTCGAGGCCCAACGTCCTTACTGGCACCCTGCCTCATGTCTACCACCTTCGGGGAACAGCCTCCTCGTTGGCACATCGCCTGGTGTCTGGCTCCGATACTATTTGTAATGGCCCAGGCTCATAACTTTGTAAAGGGTGTTTTGTTCTCCTCCCCAACCGATGTGGGATGTCAGTATAGCTTTAGGGACATGCGCTTATGTGTAGCTGGCATTGGTATATTGAGGAATCTATCTTGGATAAGAGAATTGTGCAAGGATGTGACCATAGTGTATGCATTTCTTGTCAGAGCTGGAGGGTTTCTCTTATCAGATATGTGACAATAGCGCTTGTAGGATATTGAATGATCAATTCTAAATGCACATTACTTGCCTTGGTTGAAACCTTTCCCCCAACCTGAAGGCTTCTGAAAACACTCAACCAAGTTCCTTGCTTTTGATGAGATTCAGTTGTTTTTATGGATTTTTGTTCTTCTTGTGATCCTGGTCTGTCAGACCTACTACAACATTCGGTAGCTAGTTTAGCAACTTGTTGACTTCATTATTTGATCTGATATGATCTTTCTTTTTGTGAGATCCCACATCAATTGGAGATTAGAACTTTAAAAACCTCGAGGAAAAATTCAAAAATGGCGATATCTGATAACGGTGGGCTTGAGTTGTTACAAATGGTATTAGAGCCAAGCATCGGGTAGTGTGCCAGCATGAACGCTAGCCCCCAAGGGCGTGGATTGTGAGATCCCACATTGGTTGGAGTGGGAAACGAAGCATTCCTTATAAGGGTGTGGAAACTTCTCCCTAGTAGATGCGTTTTTAAAACCTTGAGGGAAAGTTCAAAGAGGACAATATCAGCTAGTGAAGAGCTGGGGCGGTTACACTTTTCTTGCATGACCATTTATCAGAAAAGAAGTATCTTGTGGGTGGTATATTGACCATCTAAATTGTATGATTCATCTTGCAGAAGAGTACAATATCATCCTATTGCCTGGGTTTGGCGATTAA

mRNA sequence

ATGAGATTATATTTGGCTATAGCAATTTCACCCACCTACGCTTCCACGTTTCTCTCTCTCTTCTCTCTCTCATCCTTGCTTTTCCGTCCCGGCATTCTTACTTTTGCGCCTCCGAAAGCCGAACTTGTGATCTTCCTGCAAGGTTTAATCCCCTTCTTAAGCTTTAGGCTTCTAGGTATCTGGGTTTTGTCCCTATTCTGCAATTACAAAGTTCTGAAGTTTCGAGGATCGCCTAAAGAAGAGTACAATATCATCCTATTGCCTGGGTTTGGCGATTAA

Coding sequence (CDS)

ATGAGATTATATTTGGCTATAGCAATTTCACCCACCTACGCTTCCACGTTTCTCTCTCTCTTCTCTCTCTCATCCTTGCTTTTCCGTCCCGGCATTCTTACTTTTGCGCCTCCGAAAGCCGAACTTGTGATCTTCCTGCAAGGTTTAATCCCCTTCTTAAGCTTTAGGCTTCTAGGTATCTGGGTTTTGTCCCTATTCTGCAATTACAAAGTTCTGAAGTTTCGAGGATCGCCTAAAGAAGAGTACAATATCATCCTATTGCCTGGGTTTGGCGATTAA

Protein sequence

MRLYLAIAISPTYASTFLSLFSLSSLLFRPGILTFAPPKAELVIFLQGLIPFLSFRLLGIWVLSLFCNYKVLKFRGSPKEEYNIILLPGFGD
Homology
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BLAST of CmaCh02G000770 vs. NCBI nr
Match: KAG6604767.1 (hypothetical protein SDJN03_02084, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.1 bits (305), Expect = 2.5e-24
Identity = 66/75 (88.00%), Postives = 69/75 (92.00%), Query Frame = 0 

Query: 18  LSLFSLSSLLFRPGILTFAPPKAELVIFLQGLIPFLSFRLLGIWVLSLFCNYKVLKFRGS 77
           LS  SLSSLLFRPGILTFAPPKAE+VIFLQGLI FLSFRLLGI VLSLF NYKVLKFRGS
Sbjct: 354 LSSLSLSSLLFRPGILTFAPPKAEIVIFLQGLILFLSFRLLGIGVLSLFSNYKVLKFRGS 413

Query: 78  PKEEYNIILLPGFGD 93
           P+EE+ IILLPGFGD
Sbjct: 414 PEEEH-IILLPGFGD 427

The following BLAST results are available for this feature:
BLAST of CmaCh02G000770 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh02G000770 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh02G000770 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6604767.12.5e-2488.00hypothetical protein SDJN03_02084, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh02G000770 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G000770.1CmaCh02G000770.1mRNA