CmaCh02G000240 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G000240
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	LOB domain-containing protein
Location	Cma_Chr02: 124732 .. 126180 (+)
RNA-Seq Expression	CmaCh02G000240
Synteny	CmaCh02G000240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTGCGTTCTGAAAACTCGATTTTGACCTGAATTTTGTTCGGAAGCTACCGGAATTGGTCACATATCCGCGGGAGAAATGAAGGAGAGTGGACGGAAACAAGGCGCTGTTGCACCATGCGCCGCCTGTAAGCTTCTTCGTCGGAGATGTGCTCAAGACTGCGTTTTCGCCCCTTATTTCCCCGCCGACGAGCCTCATAAGTTCGCCAGCGTCCATAAAGTCTTCGGCGCTAGTAATGTCAACAAGATGTTACAGGTTTCACTATATCAAATTACATTCTTCTTTCTTTTTCTTAAATTTTGTCCCTAAACTCTCAATTATTTTACCGACAATCCTATTACCCTATGACATTGACATTTCAATATGTATTTTTCCTAGTTATGTATTTTTTAACGCGTACAAATATTATATTTTAATCATATGAGCTGAACGCAGCTAGCCAAGTGTTTTAAAATGTGTCCGACTTCTTAAAAAAGTAAGCCCAAAAACAGTTCGAGAAGATTGGTGGGTGTAGGAAAGAGTAAAGGGGTGGTTTAATTTGTAGTAATTAGTGGTCAATTCAAACCCACCTTTAACCCTACCCTTTGGTTCCCACTTAACTTTCCACTCACATTATTAAAGCTAAGCTTAGCTTTCAGGAAATTTCTTTGCTTAATATAAAGTGTATAATTTGTGTCTTGATTAATTATTTAATTCCCTTCAACTTTAAGCTCCATTAGGCTGATAGCTTTTGGGAAATTACAATACAGACCCGAAGCTTTTCTTTTTCTTATTCTTTTTTTAATTTTAGCATCATTTATACTATTATGACGTCATAATAGAAGCTAAAATTGTCTATATGTGAATAGGAGTTGCCGGAGCACCAGCGGAGCGACGCGGTGAGCTCGATGGTGTACGAAGCAAACGCAAGGGTCCGAGATCCAGTGTACGGCTGCGTCGGAGCCATATCGTCGCTGCAACAGCAAATCGACCTGTTACAAACCGAGCTAGCGATTGCGCAAGCGGAAGTAGTACACATGCGAATGCGTCAATTCACATCGTCATCGTCGAACCCGACAGCCGGACACTCGCCGGAAACTGCGTCGCCGTCCGGCAAGATCAACATTCCGCCGCAAAACAAGTCCTATTTTTCCATGGACAACATGGGGGAGTCGTTGTGGTCATCCTGCTAGCTAATTAATTGAAGCTTTAGGCGTGCGCTTCTTTTTTCATCTTAGTTTTCCTAATTATCATTATAATGTGCTTTCTTTATCATTATAATGGGGCGGGCTTGCTTTATTGTACTTCTGCTTTTATTTATACTTTTTTTATATAAATTACGTAACTTTGTAGAAAAGAAAATAGCGCTACGCCGAGATCATTATCATTCATAACCATATTGTAAATGCTTAAACAATGTAAATAATTGTGCGGTGTCATATTTATAATATATACTTTTAATTATAGTA

mRNA sequence

TTTCTGCGTTCTGAAAACTCGATTTTGACCTGAATTTTGTTCGGAAGCTACCGGAATTGGTCACATATCCGCGGGAGAAATGAAGGAGAGTGGACGGAAACAAGGCGCTGTTGCACCATGCGCCGCCTGTAAGCTTCTTCGTCGGAGATGTGCTCAAGACTGCGTTTTCGCCCCTTATTTCCCCGCCGACGAGCCTCATAAGTTCGCCAGCGTCCATAAAGTCTTCGGCGCTAGTAATGTCAACAAGATGTTACAGGAGTTGCCGGAGCACCAGCGGAGCGACGCGGTGAGCTCGATGGTGTACGAAGCAAACGCAAGGGTCCGAGATCCAGTGTACGGCTGCGTCGGAGCCATATCGTCGCTGCAACAGCAAATCGACCTGTTACAAACCGAGCTAGCGATTGCGCAAGCGGAAGTAGTACACATGCGAATGCGTCAATTCACATCGTCATCGTCGAACCCGACAGCCGGACACTCGCCGGAAACTGCGTCGCCGTCCGGCAAGATCAACATTCCGCCGCAAAACAAGTCCTATTTTTCCATGGACAACATGGGGGAGTCGTTGTGGTCATCCTGCTAGCTAATTAATTGAAGCTTTAGGCGTGCGCTTCTTTTTTCATCTTAGTTTTCCTAATTATCATTATAATGTGCTTTCTTTATCATTATAATGGGGCGGGCTTGCTTTATTGTACTTCTGCTTTTATTTATACTTTTTTTATATAAATTACGTAACTTTGTAGAAAAGAAAATAGCGCTACGCCGAGATCATTATCATTCATAACCATATTGTAAATGCTTAAACAATGTAAATAATTGTGCGGTGTCATATTTATAATATATACTTTTAATTATAGTA

Coding sequence (CDS)

ATGAAGGAGAGTGGACGGAAACAAGGCGCTGTTGCACCATGCGCCGCCTGTAAGCTTCTTCGTCGGAGATGTGCTCAAGACTGCGTTTTCGCCCCTTATTTCCCCGCCGACGAGCCTCATAAGTTCGCCAGCGTCCATAAAGTCTTCGGCGCTAGTAATGTCAACAAGATGTTACAGGAGTTGCCGGAGCACCAGCGGAGCGACGCGGTGAGCTCGATGGTGTACGAAGCAAACGCAAGGGTCCGAGATCCAGTGTACGGCTGCGTCGGAGCCATATCGTCGCTGCAACAGCAAATCGACCTGTTACAAACCGAGCTAGCGATTGCGCAAGCGGAAGTAGTACACATGCGAATGCGTCAATTCACATCGTCATCGTCGAACCCGACAGCCGGACACTCGCCGGAAACTGCGTCGCCGTCCGGCAAGATCAACATTCCGCCGCAAAACAAGTCCTATTTTTCCATGGACAACATGGGGGAGTCGTTGTGGTCATCCTGCTAG

Protein sequence

MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSMDNMGESLWSSC

Homology

[Close]

BLAST of CmaCh02G000240 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.1e-60
Identity = 124/171 (72.51%), Postives = 140/171 (81.87%), Query Frame = 0


Query: 1   MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQE 60
           MKES RKQGA +PCAACKLLRRRCAQDCVF+PYFPADEP KFA+VH+VFGASNVNKMLQE
Sbjct: 1   MKESSRKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQE 60

Query: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQ 120
           LP HQR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQ +LA+AQAEVVH+R+RQ
Sbjct: 61  LPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ 120

Query: 121 FTSSSSNPTAGHSPETA-SPSGKINIPPQNKSYFS-MD-----NMGESLWS 165
            T+   +     SP ++ SPS K   P  NK  FS MD     ++GES+WS
Sbjct: 121 STNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of CmaCh02G000240 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 176.0 bits (445), Expect = 3.5e-43
Identity = 81/108 (75.00%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 12  APCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVS 71
           +PCA+CKLLRRRCA+DC+FAPYFP D+PHKFA VHKVFGASNV+KMLQELP HQR+DAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMR 120
           S+V+EANARVRDPVYGCVGAIS LQ Q+  LQ +LA+AQAE++ ++M+
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]

BLAST of CmaCh02G000240 vs. ExPASy Swiss-Prot
Match: Q9SA51 (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.5e-43
Identity = 93/166 (56.02%), Postives = 117/166 (70.48%), Query Frame = 0


Query: 1   MKESGRKQG-AVAPCAACKLLRRRCAQD-CVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           M++ G + G  V+PCA CKLLRR+C +D CVFAPYFPA EP+KFA VHK+FGASNVNKML
Sbjct: 1   MRQKGHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKML 60

Query: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRM 120
           QEL E+ RSDAV SMVYEANAR++DPVYGCVG ISSL +Q++ LQT+LA AQAE++H+R 
Sbjct: 61  QELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRT 120

Query: 121 RQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSMDNMGESLWS 165
                +   P    +     PS K      + +    D+ G+ LWS
Sbjct: 121 LHRIHTKPPPYTAST--VTFPSNKDFYSDIDMAVAYTDDAGDFLWS 164

[Close]

BLAST of CmaCh02G000240 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 161.8 bits (408), Expect = 6.8e-39
Identity = 81/147 (55.10%), Postives = 104/147 (70.75%), Query Frame = 0


Query: 11  VAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAV 70
           + PCAACKLLRRRCAQ+C F+PYF   EPHKFASVHKVFGASNV+KML E+PE QR+DA 
Sbjct: 43  ITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAA 102

Query: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQFTSSSSNPT- 130
           +S+VYEAN R+RDPVYGC+GAIS+LQQQ+  LQ EL   ++E++  + R+  ++   P+ 
Sbjct: 103 NSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPSN 162

Query: 131 --------AGHSPETASPSGKINIPPQ 149
                   +G     A P  +   PPQ
Sbjct: 163 SQVAGFHNSGGVSVIAPPPQRPTTPPQ 189

[Close]

BLAST of CmaCh02G000240 vs. ExPASy Swiss-Prot
Match: Q9AT61 (LOB domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=LBD13 PE=1 SV=2)

HSP 1 Score: 151.8 bits (382), Expect = 7.0e-36
Identity = 75/134 (55.97%), Postives = 97/134 (72.39%), Query Frame = 0


Query: 5   GRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEH 64
           G     V PCAACKLLRRRCA++C F+PYF   EPHKFA+VHKVFGASNV+KML E+ E 
Sbjct: 44  GTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGES 103

Query: 65  QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQFTSS 124
           QR DA +S+VYEAN R+RDP+YGC+GAIS+LQ  I  LQ+EL   + E++  + ++ T+ 
Sbjct: 104 QRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTI 163

Query: 125 SSNPTAGHSPETAS 139
           +S     +S  T S
Sbjct: 164 TSLQNNFNSTTTTS 177

[Close]

BLAST of CmaCh02G000240 vs. ExPASy TrEMBL
Match: A0A6J1I1K8 (LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111469678 PE=3 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 6.3e-88
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQE 60
           MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQE
Sbjct: 1   MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQE 60

Query: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQ 120
           LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQ
Sbjct: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQ 120

Query: 121 FTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSMDNMGESLWSSC 167
           FTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSMDNMGESLWSSC
Sbjct: 121 FTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSMDNMGESLWSSC 166

[Close]

BLAST of CmaCh02G000240 vs. ExPASy TrEMBL
Match: A0A6J1G6E3 (LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111451283 PE=3 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 6.3e-88
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQE 60
           MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQE
Sbjct: 1   MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQE 60

Query: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQ 120
           LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQ
Sbjct: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQ 120

Query: 121 FTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSMDNMGESLWSSC 167
           FTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSMDNMGESLWSSC
Sbjct: 121 FTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSMDNMGESLWSSC 166

[Close]

BLAST of CmaCh02G000240 vs. ExPASy TrEMBL
Match: A0A0A0KBA8 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G139130 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.1e-75
Identity = 152/173 (87.86%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MKE-SGRKQG-AVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG +++PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQT+LAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSM-----DNMGESLWSSC 167
           R F SSS NPTAGHSPETASPS K+NIP  NKSYFSM     D+MGE+LWSSC
Sbjct: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of CmaCh02G000240 vs. ExPASy TrEMBL
Match: A0A5D3CBA3 (LOB domain-containing protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00510 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.4e-73
Identity = 149/173 (86.13%), Postives = 156/173 (90.17%), Query Frame = 0


Query: 1   MKE-SGRKQG-AVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG +++PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQT+LAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSM-----DNMGESLWSSC 167
           R   SSS NPT GHS ETASPS K+NIP  NKSYFSM     D+MGE+LWSSC
Sbjct: 121 RHIPSSSYNPTMGHSSETASPSSKMNIPVPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of CmaCh02G000240 vs. ExPASy TrEMBL
Match: A0A6J1D8X3 (LOB domain-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111017996 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.3e-72
Identity = 147/172 (85.47%), Postives = 157/172 (91.28%), Query Frame = 0


Query: 1   MKE-SGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ 60
           MKE SGRKQG ++PCAACKLLRRRCA DCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ
Sbjct: 1   MKESSGRKQGTLSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ 60

Query: 61  ELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMR 120
           ELPEHQRSDAVSSMVYEANAR+RDPVYGCVGAISSLQQQIDLLQT+LAIAQAEVVHMRMR
Sbjct: 61  ELPEHQRSDAVSSMVYEANARMRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMR 120

Query: 121 QFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSM-----DNMGESLWSSC 167
           QF S+S+ P+A HSPETA   GK+NIP QNKS+F+M     DNMGESLWSSC
Sbjct: 121 QFPSTST-PSAAHSPETA---GKLNIPAQNKSFFTMDMVGHDNMGESLWSSC 168

[Close]

BLAST of CmaCh02G000240 vs. NCBI nr
Match: XP_022947417.1 (LOB domain-containing protein 4-like [Cucurbita moschata] >XP_022970811.1 LOB domain-containing protein 4-like [Cucurbita maxima] >KAG6604717.1 LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034846.1 LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 333.2 bits (853), Expect = 1.3e-87
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQE 60
           MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQE
Sbjct: 1   MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQE 60

Query: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQ 120
           LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQ
Sbjct: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQ 120

Query: 121 FTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSMDNMGESLWSSC 167
           FTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSMDNMGESLWSSC
Sbjct: 121 FTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSMDNMGESLWSSC 166

[Close]

BLAST of CmaCh02G000240 vs. NCBI nr
Match: XP_023533072.1 (LOB domain-containing protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 331.6 bits (849), Expect = 3.8e-87
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQE 60
           MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQE
Sbjct: 1   MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQE 60

Query: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQ 120
           LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQ
Sbjct: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQ 120

Query: 121 FTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSMDNMGESLWSSC 167
           FTSSSSNPTAGHSPET SPSGKINIPPQNKSYFSMDNMGESLWSSC
Sbjct: 121 FTSSSSNPTAGHSPETVSPSGKINIPPQNKSYFSMDNMGESLWSSC 166

[Close]

BLAST of CmaCh02G000240 vs. NCBI nr
Match: XP_004150042.1 (LOB domain-containing protein 4 [Cucumis sativus] >KGN46813.1 hypothetical protein Csa_020952 [Cucumis sativus])

HSP 1 Score: 291.6 bits (745), Expect = 4.3e-75
Identity = 152/173 (87.86%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MKE-SGRKQG-AVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG +++PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQT+LAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSM-----DNMGESLWSSC 167
           R F SSS NPTAGHSPETASPS K+NIP  NKSYFSM     D+MGE+LWSSC
Sbjct: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of CmaCh02G000240 vs. NCBI nr
Match: XP_038902133.1 (LOB domain-containing protein 4-like [Benincasa hispida])

HSP 1 Score: 291.2 bits (744), Expect = 5.7e-75
Identity = 152/173 (87.86%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MKE-SGRKQG-AVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE +GRKQG +++PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEINGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQT+LAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAIAQAEVVHMRM 120

Query: 121 RQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSM-----DNMGESLWSSC 167
           RQF SSS N T GHSPETASPSGK+NIP  NKSYFSM     DNMGESLWSSC
Sbjct: 121 RQFPSSSCNLTIGHSPETASPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 173

[Close]

BLAST of CmaCh02G000240 vs. NCBI nr
Match: KAA0054642.1 (LOB domain-containing protein 4-like [Cucumis melo var. makuwa] >TYK08620.1 LOB domain-containing protein 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 283.9 bits (725), Expect = 9.0e-73
Identity = 149/173 (86.13%), Postives = 156/173 (90.17%), Query Frame = 0


Query: 1   MKE-SGRKQG-AVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG +++PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQT+LAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSM-----DNMGESLWSSC 167
           R   SSS NPT GHS ETASPS K+NIP  NKSYFSM     D+MGE+LWSSC
Sbjct: 121 RHIPSSSYNPTMGHSSETASPSSKMNIPVPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of CmaCh02G000240 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 234.2 bits (596), Expect = 7.6e-62
Identity = 124/171 (72.51%), Postives = 140/171 (81.87%), Query Frame = 0


Query: 1   MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQE 60
           MKES RKQGA +PCAACKLLRRRCAQDCVF+PYFPADEP KFA+VH+VFGASNVNKMLQE
Sbjct: 1   MKESSRKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQE 60

Query: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQ 120
           LP HQR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQ +LA+AQAEVVH+R+RQ
Sbjct: 61  LPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ 120

Query: 121 FTSSSSNPTAGHSPETA-SPSGKINIPPQNKSYFS-MD-----NMGESLWS 165
            T+   +     SP ++ SPS K   P  NK  FS MD     ++GES+WS
Sbjct: 121 STNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of CmaCh02G000240 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 176.0 bits (445), Expect = 2.5e-44
Identity = 81/108 (75.00%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 12  APCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVS 71
           +PCA+CKLLRRRCA+DC+FAPYFP D+PHKFA VHKVFGASNV+KMLQELP HQR+DAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMR 120
           S+V+EANARVRDPVYGCVGAIS LQ Q+  LQ +LA+AQAE++ ++M+
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]

BLAST of CmaCh02G000240 vs. TAIR 10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9 )

HSP 1 Score: 175.6 bits (444), Expect = 3.2e-44
Identity = 93/166 (56.02%), Postives = 117/166 (70.48%), Query Frame = 0


Query: 1   MKESGRKQG-AVAPCAACKLLRRRCAQD-CVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           M++ G + G  V+PCA CKLLRR+C +D CVFAPYFPA EP+KFA VHK+FGASNVNKML
Sbjct: 1   MRQKGHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKML 60

Query: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRM 120
           QEL E+ RSDAV SMVYEANAR++DPVYGCVG ISSL +Q++ LQT+LA AQAE++H+R 
Sbjct: 61  QELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRT 120

Query: 121 RQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSMDNMGESLWS 165
                +   P    +     PS K      + +    D+ G+ LWS
Sbjct: 121 LHRIHTKPPPYTAST--VTFPSNKDFYSDIDMAVAYTDDAGDFLWS 164

[Close]

BLAST of CmaCh02G000240 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 161.8 bits (408), Expect = 4.8e-40
Identity = 81/147 (55.10%), Postives = 104/147 (70.75%), Query Frame = 0


Query: 11  VAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAV 70
           + PCAACKLLRRRCAQ+C F+PYF   EPHKFASVHKVFGASNV+KML E+PE QR+DA 
Sbjct: 43  ITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAA 102

Query: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQFTSSSSNPT- 130
           +S+VYEAN R+RDPVYGC+GAIS+LQQQ+  LQ EL   ++E++  + R+  ++   P+ 
Sbjct: 103 NSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPSN 162

Query: 131 --------AGHSPETASPSGKINIPPQ 149
                   +G     A P  +   PPQ
Sbjct: 163 SQVAGFHNSGGVSVIAPPPQRPTTPPQ 189

[Close]

BLAST of CmaCh02G000240 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 151.8 bits (382), Expect = 5.0e-37
Identity = 71/110 (64.55%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 11  VAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAV 70
           ++PCAACK+LRRRCA+ CV APYFP  +P KF   H+VFGASN+ K LQELPE QR+DAV
Sbjct: 31  LSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 90

Query: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQ 121
           +SMVYEA AR+RDPVYGC GAI  LQ+Q+  LQ +LA AQ E+V+M+ ++
Sbjct: 91  NSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQR 140

The following BLAST results are available for this feature:

BLAST of CmaCh02G000240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHE9	1.1e-60	72.51	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q8LBW3	3.5e-43	75.00	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9SA51	4.5e-43	56.02	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]
Q8L5T5	6.8e-39	55.10	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]
Q9AT61	7.0e-36	55.97	LOB domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=LBD13 PE=1 S...	[more]

BLAST of CmaCh02G000240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I1K8	6.3e-88	100.00	LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111469678...	[more]
A0A6J1G6E3	6.3e-88	100.00	LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114512...	[more]
A0A0A0KBA8	2.1e-75	87.86	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G139130 PE=3 SV...	[more]
A0A5D3CBA3	4.4e-73	86.13	LOB domain-containing protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1D8X3	1.3e-72	85.47	LOB domain-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111017996 P...	[more]

BLAST of CmaCh02G000240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947417.1	1.3e-87	100.00	LOB domain-containing protein 4-like [Cucurbita moschata] >XP_022970811.1 LOB do...	[more]
XP_023533072.1	3.8e-87	99.40	LOB domain-containing protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_004150042.1	4.3e-75	87.86	LOB domain-containing protein 4 [Cucumis sativus] >KGN46813.1 hypothetical prote...	[more]
XP_038902133.1	5.7e-75	87.86	LOB domain-containing protein 4-like [Benincasa hispida]	[more]
KAA0054642.1	9.0e-73	86.13	LOB domain-containing protein 4-like [Cucumis melo var. makuwa] >TYK08620.1 LOB ...	[more]

BLAST of CmaCh02G000240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31320.1	7.6e-62	72.51	LOB domain-containing protein 4	[more]
AT2G30130.1	2.5e-44	75.00	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G16530.1	3.2e-44	56.02	ASYMMETRIC LEAVES 2-like 9	[more]
AT2G40470.1	4.8e-40	55.10	LOB domain-containing protein 15	[more]
AT1G07900.1	5.0e-37	64.55	LOB domain-containing protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..150
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 1..156
None	No IPR available	PANTHER	PTHR31301:SF58	LOB DOMAIN-CONTAINING PROTEIN 3	coord: 1..156
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 13..110 e-value: 6.8E-44 score: 148.5
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 12..113 score: 27.427423

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G000240.1	CmaCh02G000240.1	mRNA