CmaCh01G020050 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G020050
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr01: 12856678 .. 12857045 (-)
RNA-Seq Expression	CmaCh01G020050
Synteny	CmaCh01G020050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGGTTAGAGTATGGATGATATTATTAGAAAGACGAACAGAGAAATTAATGTAAACTAAAATGGAAGATGAAATTGAAGAAGAAAAGGAGAAAGCTGTGTTCCGTTGCAACAAACTTAGTTGTTTTAATGAAGGAATAGAAGGGAAGTTACAACAAATGTTGGTACCATTTTCTCTTACGACAACGCATTTGCAGAAGAATCCAGGAAGACGATGCCTCTGTTAGCCGCTGGGAGTGAACAGAAGAAACAGAAACAGAATCAGCCACCAAGGAGACAACGACGGCAATCACACCACGATGAACCTGCAAAAATTACCTCCCTTTCTCTATCTTCTTCACAAGCCAACGAGCGCATTTTCTAG

mRNA sequence

ATGGGAAAGGTTAGAGTATGGATGATATTATTAGAAAGACGAACAGAGAAATTAATGAATAGAAGGGAAGTTACAACAAATGTTGGTACCATTTTCTCTTACGACAACGCATTTGCAGAAGAATCCAGGAAGACGATGCCTCTGTTAGCCGCTGGGAGTGAACAGAAGAAACAGAAACAGAATCAGCCACCAAGGAGACAACGACGGCAATCACACCACGATGAACCTGCAAAAATTACCTCCCTTTCTCTATCTTCTTCACAAGCCAACGAGCGCATTTTCTAG

Coding sequence (CDS)

ATGGGAAAGGTTAGAGTATGGATGATATTATTAGAAAGACGAACAGAGAAATTAATGAATAGAAGGGAAGTTACAACAAATGTTGGTACCATTTTCTCTTACGACAACGCATTTGCAGAAGAATCCAGGAAGACGATGCCTCTGTTAGCCGCTGGGAGTGAACAGAAGAAACAGAAACAGAATCAGCCACCAAGGAGACAACGACGGCAATCACACCACGATGAACCTGCAAAAATTACCTCCCTTTCTCTATCTTCTTCACAAGCCAACGAGCGCATTTTCTAG

Protein sequence

MGKVRVWMILLERRTEKLMNRREVTTNVGTIFSYDNAFAEESRKTMPLLAAGSEQKKQKQNQPPRRQRRQSHHDEPAKITSLSLSSSQANERIF

Homology

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BLAST of CmaCh01G020050 vs. NCBI nr
Match: KAG6608626.1 (hypothetical protein SDJN03_01968, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-20
Identity = 58/83 (69.88%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 12  ERRTEKLMNRREVTTNVGTIFSYDNAFAEESRKTMPLLAAGSEQKKQKQNQPPRRQRRQS 71
           E+  +K+ +  +  +++ T    DNAFAEES+KTMPLLAAGSEQKKQKQN+PPRRQRRQS
Sbjct: 251 EKAMKKMRDSEDWFSDIETRSQKDNAFAEESKKTMPLLAAGSEQKKQKQNEPPRRQRRQS 310

Query: 72  HHDEPAKITSLSLSSSQANERIF 95
           HHDEPA+I+S+SLSSSQANERIF
Sbjct: 311 HHDEPAEISSVSLSSSQANERIF 333

The following BLAST results are available for this feature:

BLAST of CmaCh01G020050 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh01G020050 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh01G020050 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608626.1	1.0e-20	69.88	hypothetical protein SDJN03_01968, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh01G020050 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G020050.1	CmaCh01G020050.1	mRNA