CmaCh01G018410 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G018410
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	SCP2 domain-containing protein
Location	Cma_Chr01: 12165391 .. 12167398 (+)
RNA-Seq Expression	CmaCh01G018410
Synteny	CmaCh01G018410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGCAGCAAGTCAGCCCATCAATTCATTATTCAATTCTCTCTCTCTCACTATGTTAAAATCCCATCGCATTACCCATTACCTCAACCGTCAGAGCTTCGTCTGCGCTCCATTTTCTTCCACCTCTCTCCGCATCTTTTCTGCGCCACTTCCTTGCCAATGGCGAATTCCACCGATTCTCCCCTCAAATCTGACGCTCTTTTGGAGCAGTTGAAGCAGTATCTCACCACCGATGCCGGGAAACAGGTCGTCAAGAACATCGGCCATGTTTACCAGATCAATATTTCCCCCAAGGTCATCTTCCTTTCTCTTCTGTGATTTTCTAATTTTTCTCCGGAGTATTGAAGCCCTTGAATCTGAATTGAATTATTGGCAGAAAATTGGAACTGATGAGGTTGTTTATACCATTGATCTCAAGAAAGGGGAGGTTACCAAAGGTTAGGGCTTTTACTTTCTTCGATTCGGTGCCTTTTCTGGTTGATACGATCGAGTGATGTCTAAACCCCTGCTCTTGTCTCCTTTCAATTATTATTATTATTTTTTTTTTTTGAGCAATCGAAGGATGAATGAAGTTTAAAATCCATTTCCACTGGTTTTAGGTTATGGTGAAAGGTCGATTTATACCCTAAGCTTAATGCCTTGTGTTCGAATTGGTATTTGATTATGAATATCAATATCACGACGAGGCATCACAAAATTCTTAGAAGTACATTTTCGCATCACAGCCATCGATTGTCAAATGCATTTCTCATCTTCTTGGTACCAAGTAGCTATAACCTTTTAGAGCTGGCATTGCGTACTTATATGCTTCGGCTGGAAAATTGAGAAAAGAATTATGATTGTTTTGAGCTCAGGTCCATACGAAGGAGGAAAGCCTGACGCCACCCTATCCTTCAAGGATGAAGATTTCATTAAAATTGCTTTGGGGAAGATGAATCCTCAGATGGCTTTCCTCAGGTACTTATAATTCATTGATTATATCATCTTTAGGGGTCTGCTTTTTCCTTCTCTCCCAAGTGCTTACGTATTTAGAGTGGATTTTCCATGACTTTGAAGTAAAAGATGTTTGTAATCGGTTAGAAATGCTTTTCAAATTTATTATGATGTTTAGTTCACGAATAAGACTTTTGAGTGTTGTACGTTAAGTGAGACACCTTTTGGTAGAAATGCTGATTAGGTGCTTCCTCCAAAAGTACTTCATAGTTTCTTTTGGTGTTCTTAGAACTTTGAAATTCACTTTTGACTATGCAGCCAAGCACTAGGATAAACTTGAAGTGCTTTTAATGGGCTAAAAACGATTTTCACCATCTTAAAACTCATATTAAACGTACTCTATAAGAGCTATTGAAAATTGCAGACATACTCGAGGTATTTCCTTCAGAAGTGCTTATTGTACACTTTTATTCGAAAAAAGTCATCCGAAACTCACTATTATTTGGCGAAAACACTGTAAACTCTACAGGGGCGCACTGAAGATCAAGGGGAGTATTAGCGCAGCACAGAAATTCACTCCCGACATTTTCCCCAAGCCTGCAAAGTTATGATCAGATTCAAGGGGGAAACTGCTGTTCATGAAGCAGCTCCACGATGTCCGGGTTGTGAGATTTACGGGAAATTTAGACAAGAAAGGAAATAGAAAAAGGAAGAAAGTTCTAAATCAATAAATTCAGTGTCAAAGTATTAGTCCAATTCTGTTGTAGAATATCATAACAAGTTGGGAACTACACTGCCATATTTAATGTTCAAATTATCTTCTCTTGTGCAATATGGCGCCAACTTTTGGAAAGGCCTGACGTACAGGTACAACTCAACTCATAGAATTGCTCTTTAAATTCTGTTATTCTCGTCTTCTTTTTCCAAATAGGTTTATATATACGTATGTTGCATTTGTTCTGTCCGAGTTGCTATGCTTAGAACTATCAGCTCTTTTTTATGTCAATGTCAGGATTTTGTGCTTTTACCATTCATGCTTTATGTCATATTCTCCTGCAAATTCGTTTGTTTTTGGTC

mRNA sequence

GGGCAGCAAGTCAGCCCATCAATTCATTATTCAATTCTCTCTCTCTCACTATGTTAAAATCCCATCGCATTACCCATTACCTCAACCGTCAGAGCTTCGTCTGCGCTCCATTTTCTTCCACCTCTCTCCGCATCTTTTCTGCGCCACTTCCTTGCCAATGGCGAATTCCACCGATTCTCCCCTCAAATCTGACGCTCTTTTGGAGCAGTTGAAGCAGTATCTCACCACCGATGCCGGGAAACAGGTCGTCAAGAACATCGGCCATGTTTACCAGATCAATATTTCCCCCAAGAAAATTGGAACTGATGAGGTTGTTTATACCATTGATCTCAAGAAAGGGGAGGTTACCAAAGGTCCATACGAAGGAGGAAAGCCTGACGCCACCCTATCCTTCAAGGATGAAGATTTCATTAAAATTGCTTTGGGGAAGATGAATCCTCAGATGGCTTTCCTCAGGGGCGCACTGAAGATCAAGGGGAGTATTAGCGCAGCACAGAAATTCACTCCCGACATTTTCCCCAAGCCTGCAAAGTTATGATCAGATTCAAGGGGGAAACTGCTGTTCATGAAGCAGCTCCACGATGTCCGGGTTGTGAGATTTACGGGAAATTTAGACAAGAAAGGAAATAGAAAAAGGAAGAAAGTTCTAAATCAATAAATTCAGTGTCAAAGTATTAGTCCAATTCTGTTGTAGAATATCATAACAAGTTGGGAACTACACTGCCATATTTAATGTTCAAATTATCTTCTCTTGTGCAATATGGCGCCAACTTTTGGAAAGGCCTGACGTACAGGTACAACTCAACTCATAGAATTGCTCTTTAAATTCTGTTATTCTCGTCTTCTTTTTCCAAATAGGTTTATATATACGTATGTTGCATTTGTTCTGTCCGAGTTGCTATGCTTAGAACTATCAGCTCTTTTTTATGTCAATGTCAGGATTTTGTGCTTTTACCATTCATGCTTTATGTCATATTCTCCTGCAAATTCGTTTGTTTTTGGTC

Coding sequence (CDS)

ATGGCGAATTCCACCGATTCTCCCCTCAAATCTGACGCTCTTTTGGAGCAGTTGAAGCAGTATCTCACCACCGATGCCGGGAAACAGGTCGTCAAGAACATCGGCCATGTTTACCAGATCAATATTTCCCCCAAGAAAATTGGAACTGATGAGGTTGTTTATACCATTGATCTCAAGAAAGGGGAGGTTACCAAAGGTCCATACGAAGGAGGAAAGCCTGACGCCACCCTATCCTTCAAGGATGAAGATTTCATTAAAATTGCTTTGGGGAAGATGAATCCTCAGATGGCTTTCCTCAGGGGCGCACTGAAGATCAAGGGGAGTATTAGCGCAGCACAGAAATTCACTCCCGACATTTTCCCCAAGCCTGCAAAGTTATGA

Protein sequence

MANSTDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKKGEVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIFPKPAKL

Homology

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BLAST of CmaCh01G018410 vs. ExPASy Swiss-Prot
Match: Q9FMN0 (Sterol carrier protein 2 OS=Arabidopsis thaliana OX=3702 GN=SCP2 PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.0e-47
Identity = 87/121 (71.90%), Postives = 109/121 (90.08%), Query Frame = 0


Query: 6   DSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKKGEVTK 65
           ++ LKSDA+++ +K++L+TDAGK+V + IG VYQINI+PKK+G +EV Y +DLKKGEVTK
Sbjct: 3   NTQLKSDAIMDMMKEHLSTDAGKEVTEKIGLVYQINIAPKKLGFEEVTYIVDLKKGEVTK 62

Query: 66  GPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIFPKPAK 125
           G YEGGK DAT SFKD+DF+K+A GKMNPQMAF+RGA+KIKGS+SAAQKFTPDIFPKP+K
Sbjct: 63  GKYEGGKVDATFSFKDDDFVKVATGKMNPQMAFIRGAMKIKGSLSAAQKFTPDIFPKPSK 122

Query: 126 L 127
           L
Sbjct: 123 L 123

[Close]

BLAST of CmaCh01G018410 vs. ExPASy Swiss-Prot
Match: P97852 (Peroxisomal multifunctional enzyme type 2 OS=Rattus norvegicus OX=10116 GN=Hsd17b4 PE=1 SV=3)

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-13
Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 25  DAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLK--KGEVTKGPYEGGKPDATLSFKDE 84
           D G++VVK +  V++ +I+  K G     +TIDLK   GEV +GP + G  D T++  DE
Sbjct: 636 DVGREVVKKVNAVFEWHIT--KNGNVAAKWTIDLKNGSGEVYQGPAK-GSADTTITISDE 695

Query: 85  DFIKIALGKMNPQMAFLRGALKIKGSISAAQK 115
           DF+++ LGK+NPQ AF  G LK +G+I  +QK
Sbjct: 696 DFMEVVLGKLNPQNAFFSGRLKARGNIMLSQK 724

[Close]

BLAST of CmaCh01G018410 vs. ExPASy Swiss-Prot
Match: Q23655 (Non-specific lipid-transfer protein-like 1 OS=Caenorhabditis elegans OX=6239 GN=nlt-1 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-12
Identity = 43/118 (36.44%), Postives = 66/118 (55.93%), Query Frame = 0


Query: 10  KSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTD--EVVYTIDLKKGEVTKGP 69
           KSD + E++K+ + TD  K++VK +G  +++ I+    G D    V+TID K      G 
Sbjct: 4   KSDVIFEEIKERIATD--KEMVKKVGTSFRMTIA----GADGKTKVWTIDAKSDTPYVGD 63

Query: 70  YEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIFPKPAK 126
                 +  ++ KD DFI IA GKM P  AF++G +K+KG+I+ A K    + PK  K
Sbjct: 64  DSSRPVEIEINIKDSDFIAIAAGKMKPDQAFMQGKMKLKGNIAKAMKLRTILDPKMLK 115

[Close]

BLAST of CmaCh01G018410 vs. ExPASy Swiss-Prot
Match: P51659 (Peroxisomal multifunctional enzyme type 2 OS=Homo sapiens OX=9606 GN=HSD17B4 PE=1 SV=3)

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-11
Identity = 44/113 (38.94%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 4   STDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLK--KG 63
           S    L+S  + E++ + L  D G +VVK +  V++ +I+  K G     +TIDLK   G
Sbjct: 617 SEGGKLQSTFVFEEIGRRL-KDIGPEVVKKVNAVFEWHIT--KGGNIGAKWTIDLKSGSG 676

Query: 64  EVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQK 115
           +V +GP +G   D T+   DEDF+++ LGK++PQ AF  G LK +G+I  +QK
Sbjct: 677 KVYQGPAKGA-ADTTIILSDEDFMEVVLGKLDPQKAFFSGRLKARGNIMLSQK 725

[Close]

BLAST of CmaCh01G018410 vs. ExPASy Swiss-Prot
Match: P51660 (Peroxisomal multifunctional enzyme type 2 OS=Mus musculus OX=10090 GN=Hsd17b4 PE=1 SV=3)

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-11
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 27  GKQVVKNIGHVYQINISPKKIGTDEVVYTIDLK--KGEVTKGPYEGGKPDATLSFKDEDF 86
           G++VVK    V++ +I+  K GT    +TIDLK   GEV +GP + G  D T+   DEDF
Sbjct: 638 GREVVKKANAVFEWHIT--KGGTVAAKWTIDLKSGSGEVYQGPAK-GSADVTIIISDEDF 697

Query: 87  IKIALGKMNPQMAFLRGALKIKGSISAAQK 115
           +++  GK++PQ AF  G LK +G+I  +QK
Sbjct: 698 MEVVFGKLDPQKAFFSGRLKARGNIMLSQK 724

[Close]

BLAST of CmaCh01G018410 vs. ExPASy TrEMBL
Match: A0A6J1J4G8 (non-specific lipid-transfer protein-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111481168 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.1e-63
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MANSTDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKK 60
           MANSTDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKK
Sbjct: 1   MANSTDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKK 60

Query: 61  GEVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIF 120
           GEVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIF
Sbjct: 61  GEVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIF 120

Query: 121 PKPAKL 127
           PKPAKL
Sbjct: 121 PKPAKL 126

[Close]

BLAST of CmaCh01G018410 vs. ExPASy TrEMBL
Match: A0A6J1FQ91 (non-specific lipid-transfer protein-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111445980 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.1e-63
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MANSTDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKK 60
           MANSTDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKK
Sbjct: 1   MANSTDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKK 60

Query: 61  GEVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIF 120
           GEVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIF
Sbjct: 61  GEVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIF 120

Query: 121 PKPAKL 127
           PKPAKL
Sbjct: 121 PKPAKL 126

[Close]

BLAST of CmaCh01G018410 vs. ExPASy TrEMBL
Match: A0A6J1CLN7 (peroxisomal multifunctional enzyme type 2 OS=Momordica charantia OX=3673 GN=LOC111012596 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.0e-57
Identity = 110/121 (90.91%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 6   DSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKKGEVTK 65
           +SPLKSDALLEQLKQYLTTDAGKQ+++ +GHVYQINI+PKKIGTDEV+YTIDLKKGEVTK
Sbjct: 3   NSPLKSDALLEQLKQYLTTDAGKQIIEKVGHVYQINIAPKKIGTDEVIYTIDLKKGEVTK 62

Query: 66  GPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIFPKPAK 125
           GPYEGGKPDATLSFKDEDFIKIALGKMNPQ+AFLRGALK+KGSI AAQKFTPDIFPKPAK
Sbjct: 63  GPYEGGKPDATLSFKDEDFIKIALGKMNPQIAFLRGALKVKGSIGAAQKFTPDIFPKPAK 122

Query: 126 L 127
           L
Sbjct: 123 L 123

[Close]

BLAST of CmaCh01G018410 vs. ExPASy TrEMBL
Match: A0A0A0L4V5 (SCP2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G639790 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.8e-55
Identity = 109/126 (86.51%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MANSTDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKK 60
           MANS++S LKSDALL+Q+KQ+L+TDAGK++ K +G+VYQ+NISPKKIGTD VVYTIDLKK
Sbjct: 1   MANSSNSSLKSDALLDQMKQHLSTDAGKEIAKKVGYVYQLNISPKKIGTDVVVYTIDLKK 60

Query: 61  GEVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIF 120
           GEV KGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGAL+IKGSISAAQKFTPDIF
Sbjct: 61  GEVIKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALQIKGSISAAQKFTPDIF 120

Query: 121 PKPAKL 127
           PKPAKL
Sbjct: 121 PKPAKL 126

[Close]

BLAST of CmaCh01G018410 vs. ExPASy TrEMBL
Match: A0A5A7V7Q4 (Peroxisomal multifunctional enzyme type 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003420 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.2e-54
Identity = 107/126 (84.92%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 1   MANSTDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKK 60
           MANS++S LKSDALLEQ+KQ+L+TDAGK++ K +G+VYQ+NISPKKIGTDEVVYTIDLKK
Sbjct: 1   MANSSNSSLKSDALLEQMKQHLSTDAGKEIAKKVGYVYQLNISPKKIGTDEVVYTIDLKK 60

Query: 61  GEVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIF 120
           GEV KGPYEGGKPDATLSFKDEDF+KIALGKMNPQ+AFLRGAL+IKGSI AAQKFTP IF
Sbjct: 61  GEVIKGPYEGGKPDATLSFKDEDFVKIALGKMNPQIAFLRGALQIKGSIGAAQKFTPAIF 120

Query: 121 PKPAKL 127
           PKPAKL
Sbjct: 121 PKPAKL 126

[Close]

BLAST of CmaCh01G018410 vs. NCBI nr
Match: XP_022940330.1 (non-specific lipid-transfer protein-like 1 [Cucurbita moschata] >XP_022982293.1 non-specific lipid-transfer protein-like 1 [Cucurbita maxima])

HSP 1 Score: 252.3 bits (643), Expect = 2.2e-63
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MANSTDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKK 60
           MANSTDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKK
Sbjct: 1   MANSTDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKK 60

Query: 61  GEVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIF 120
           GEVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIF
Sbjct: 61  GEVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIF 120

Query: 121 PKPAKL 127
           PKPAKL
Sbjct: 121 PKPAKL 126

[Close]

BLAST of CmaCh01G018410 vs. NCBI nr
Match: XP_023525937.1 (non-specific lipid-transfer protein-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.1 bits (640), Expect = 4.9e-63
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MANSTDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKK 60
           MANSTDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKK
Sbjct: 1   MANSTDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKK 60

Query: 61  GEVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIF 120
           GEVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSI+AAQKFTPDIF
Sbjct: 61  GEVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSITAAQKFTPDIF 120

Query: 121 PKPAKL 127
           PKPAKL
Sbjct: 121 PKPAKL 126

[Close]

BLAST of CmaCh01G018410 vs. NCBI nr
Match: KAG6608476.1 (Sterol carrier protein 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037804.1 Peroxisomal multifunctional enzyme type 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 250.8 bits (639), Expect = 6.4e-63
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MANSTDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKK 60
           MANSTDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKK
Sbjct: 1   MANSTDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKK 60

Query: 61  GEVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIF 120
           GEVTKGPYEGGKPDATLSF+DEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIF
Sbjct: 61  GEVTKGPYEGGKPDATLSFQDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIF 120

Query: 121 PKPAKL 127
           PKPAKL
Sbjct: 121 PKPAKL 126

[Close]

BLAST of CmaCh01G018410 vs. NCBI nr
Match: XP_038896128.1 (peroxisomal multifunctional enzyme type 2 [Benincasa hispida])

HSP 1 Score: 236.1 bits (601), Expect = 1.6e-58
Identity = 115/126 (91.27%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MANSTDSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKK 60
           MAN  DSPLKSDALLEQ+KQ+L TDAGK++VK +GHVYQINISPKKIGTDEVVYTIDLKK
Sbjct: 1   MANFADSPLKSDALLEQMKQHLATDAGKEIVKKVGHVYQINISPKKIGTDEVVYTIDLKK 60

Query: 61  GEVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIF 120
           GEVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQ+AFLRGALKIKGSI AAQKFTPDIF
Sbjct: 61  GEVTKGPYEGGKPDATLSFKDEDFIKIALGKMNPQIAFLRGALKIKGSIGAAQKFTPDIF 120

Query: 121 PKPAKL 127
           PKPAKL
Sbjct: 121 PKPAKL 126

[Close]

BLAST of CmaCh01G018410 vs. NCBI nr
Match: XP_022142489.1 (peroxisomal multifunctional enzyme type 2 [Momordica charantia])

HSP 1 Score: 231.5 bits (589), Expect = 4.0e-57
Identity = 110/121 (90.91%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 6   DSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKKGEVTK 65
           +SPLKSDALLEQLKQYLTTDAGKQ+++ +GHVYQINI+PKKIGTDEV+YTIDLKKGEVTK
Sbjct: 3   NSPLKSDALLEQLKQYLTTDAGKQIIEKVGHVYQINIAPKKIGTDEVIYTIDLKKGEVTK 62

Query: 66  GPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIFPKPAK 125
           GPYEGGKPDATLSFKDEDFIKIALGKMNPQ+AFLRGALK+KGSI AAQKFTPDIFPKPAK
Sbjct: 63  GPYEGGKPDATLSFKDEDFIKIALGKMNPQIAFLRGALKVKGSIGAAQKFTPDIFPKPAK 122

Query: 126 L 127
           L
Sbjct: 123 L 123

[Close]

BLAST of CmaCh01G018410 vs. TAIR 10
Match: AT5G42890.1 (sterol carrier protein 2 )

HSP 1 Score: 190.7 bits (483), Expect = 7.4e-49
Identity = 87/121 (71.90%), Postives = 109/121 (90.08%), Query Frame = 0


Query: 6   DSPLKSDALLEQLKQYLTTDAGKQVVKNIGHVYQINISPKKIGTDEVVYTIDLKKGEVTK 65
           ++ LKSDA+++ +K++L+TDAGK+V + IG VYQINI+PKK+G +EV Y +DLKKGEVTK
Sbjct: 3   NTQLKSDAIMDMMKEHLSTDAGKEVTEKIGLVYQINIAPKKLGFEEVTYIVDLKKGEVTK 62

Query: 66  GPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALKIKGSISAAQKFTPDIFPKPAK 125
           G YEGGK DAT SFKD+DF+K+A GKMNPQMAF+RGA+KIKGS+SAAQKFTPDIFPKP+K
Sbjct: 63  GKYEGGKVDATFSFKDDDFVKVATGKMNPQMAFIRGAMKIKGSLSAAQKFTPDIFPKPSK 122

Query: 126 L 127
           L
Sbjct: 123 L 123

The following BLAST results are available for this feature:

BLAST of CmaCh01G018410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMN0	1.0e-47	71.90	Sterol carrier protein 2 OS=Arabidopsis thaliana OX=3702 GN=SCP2 PE=2 SV=1	[more]
P97852	2.8e-13	44.57	Peroxisomal multifunctional enzyme type 2 OS=Rattus norvegicus OX=10116 GN=Hsd17...	[more]
Q23655	1.8e-12	36.44	Non-specific lipid-transfer protein-like 1 OS=Caenorhabditis elegans OX=6239 GN=...	[more]
P51659	1.2e-11	38.94	Peroxisomal multifunctional enzyme type 2 OS=Homo sapiens OX=9606 GN=HSD17B4 PE=...	[more]
P51660	3.5e-11	43.33	Peroxisomal multifunctional enzyme type 2 OS=Mus musculus OX=10090 GN=Hsd17b4 PE...	[more]

BLAST of CmaCh01G018410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J4G8	1.1e-63	100.00	non-specific lipid-transfer protein-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1FQ91	1.1e-63	100.00	non-specific lipid-transfer protein-like 1 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1CLN7	2.0e-57	90.91	peroxisomal multifunctional enzyme type 2 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A0A0L4V5	1.8e-55	86.51	SCP2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G639790 PE=4 S...	[more]
A0A5A7V7Q4	1.2e-54	84.92	Peroxisomal multifunctional enzyme type 2 isoform X1 OS=Cucumis melo var. makuwa...	[more]

BLAST of CmaCh01G018410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940330.1	2.2e-63	100.00	non-specific lipid-transfer protein-like 1 [Cucurbita moschata] >XP_022982293.1 ...	[more]
XP_023525937.1	4.9e-63	99.21	non-specific lipid-transfer protein-like 1 [Cucurbita pepo subsp. pepo]	[more]
KAG6608476.1	6.4e-63	99.21	Sterol carrier protein 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG70...	[more]
XP_038896128.1	1.6e-58	91.27	peroxisomal multifunctional enzyme type 2 [Benincasa hispida]	[more]
XP_022142489.1	4.0e-57	90.91	peroxisomal multifunctional enzyme type 2 [Momordica charantia]	[more]

BLAST of CmaCh01G018410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42890.1	7.4e-49	71.90	sterol carrier protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003033	SCP2 sterol-binding domain	PFAM	PF02036	SCP2	coord: 16..116 e-value: 4.6E-21 score: 75.2
IPR036527	SCP2 sterol-binding domain superfamily	GENE3D	3.30.1050.10		coord: 2..121 e-value: 3.1E-33 score: 116.4
IPR036527	SCP2 sterol-binding domain superfamily	SUPERFAMILY	55718	SCP-like	coord: 8..123
IPR039543	Lipid-binding protein POX18/UbiT/NSL-TP1	PANTHER	PTHR10094	STEROL CARRIER PROTEIN 2 SCP-2 FAMILY PROTEIN	coord: 6..126
None	No IPR available	PANTHER	PTHR10094:SF29	SCP2 STEROL-BINDING DOMAIN-CONTAINING PROTEIN-RELATED	coord: 6..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G018410.1	CmaCh01G018410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0032365	intracellular lipid transport
biological_process	GO:0009646	response to absence of light
biological_process	GO:0009744	response to sucrose
biological_process	GO:0009845	seed germination
biological_process	GO:0048317	seed morphogenesis
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005777	peroxisome