CmaCh01G018080 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G018080
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	F-box protein GID2-like
Location	Cma_Chr01: 12036445 .. 12036999 (+)
RNA-Seq Expression	CmaCh01G018080
Synteny	CmaCh01G018080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCGACTAGTTCCCGATGGCGATGGGGAGCGGAAGATGGGGAAAAAACTCAGGGTGGACTCTGTGGATTGTGAAGGGGGAGGAGGAGGAGGAGGAGGAGGCGCCTCCGACAGAACTGGGTTTGTCAATTTGGATGATAATTTGCTGTTTGAGGTTTTTAAGCATGTGGATGCGACGACTCTGGCTATGGCGGCGTGTGTCAGCAAGCAATGGCACAAAACGGCGGAAGATGAGCGGCTTTGGGAGCTGATCTGTACCAGACACTGGGCCAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTAGCCCTCGGTGGCTTCCGTCGCCTCCACTCGCTCTTCATCTGGCCTCTTACCAAGCCCCAAGCCCCCTCCACATCTGCCTCAGCTTCCTCCTCATCGTCGTCGTCGCCTTGGTCTACGTTTCCGGCGATGATTGGGTCGAAGCCACCGACCCGTTGGGGGAAGGATGAGGTCCATCTCTCGCTCTCACTTCTCTCGATTCGGTACTACGAGAAGATGAATTTCAGCAACAGAGACGAATGA

mRNA sequence

ATGAAGCGACTAGTTCCCGATGGCGATGGGGAGCGGAAGATGGGGAAAAAACTCAGGGTGGACTCTGTGGATTGTGAAGGGGGAGGAGGAGGAGGAGGAGGAGGCGCCTCCGACAGAACTGGGTTTGTCAATTTGGATGATAATTTGCTGTTTGAGGTTTTTAAGCATGTGGATGCGACGACTCTGGCTATGGCGGCGTGTGTCAGCAAGCAATGGCACAAAACGGCGGAAGATGAGCGGCTTTGGGAGCTGATCTGTACCAGACACTGGGCCAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTAGCCCTCGGTGGCTTCCGTCGCCTCCACTCGCTCTTCATCTGGCCTCTTACCAAGCCCCAAGCCCCCTCCACATCTGCCTCAGCTTCCTCCTCATCGTCGTCGTCGCCTTGGTCTACGTTTCCGGCGATGATTGGGTCGAAGCCACCGACCCGTTGGGGGAAGGATGAGGTCCATCTCTCGCTCTCACTTCTCTCGATTCGGTACTACGAGAAGATGAATTTCAGCAACAGAGACGAATGA

Coding sequence (CDS)

ATGAAGCGACTAGTTCCCGATGGCGATGGGGAGCGGAAGATGGGGAAAAAACTCAGGGTGGACTCTGTGGATTGTGAAGGGGGAGGAGGAGGAGGAGGAGGAGGCGCCTCCGACAGAACTGGGTTTGTCAATTTGGATGATAATTTGCTGTTTGAGGTTTTTAAGCATGTGGATGCGACGACTCTGGCTATGGCGGCGTGTGTCAGCAAGCAATGGCACAAAACGGCGGAAGATGAGCGGCTTTGGGAGCTGATCTGTACCAGACACTGGGCCAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTAGCCCTCGGTGGCTTCCGTCGCCTCCACTCGCTCTTCATCTGGCCTCTTACCAAGCCCCAAGCCCCCTCCACATCTGCCTCAGCTTCCTCCTCATCGTCGTCGTCGCCTTGGTCTACGTTTCCGGCGATGATTGGGTCGAAGCCACCGACCCGTTGGGGGAAGGATGAGGTCCATCTCTCGCTCTCACTTCTCTCGATTCGGTACTACGAGAAGATGAATTTCAGCAACAGAGACGAATGA

Protein sequence

MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

Homology

[Close]

BLAST of CmaCh01G018080 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.4e-45
Identity = 96/186 (51.61%), Postives = 114/186 (61.29%), Query Frame = 0


Query: 1   MKRLVPD----GDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKH 60
           MKR   D    GD   +  KK++                  +  GF NLD+NL++EV KH
Sbjct: 1   MKRSTTDSDLAGDAHNETNKKMK--------------STEEEEIGFSNLDENLVYEVLKH 60

Query: 61  VDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSL 120
           VDA TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLRSVVLALGGFRRLHSL
Sbjct: 61  VDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSL 120

Query: 121 FIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEK 180
           ++WPL+KP                            P  R+GKDE+ L+LSLLSIRYYEK
Sbjct: 121 YLWPLSKP---------------------------NPRARFGKDELKLTLSLLSIRYYEK 145

Query: 181 MNFSNR 183
           M+F+ R
Sbjct: 181 MSFTKR 145

[Close]

BLAST of CmaCh01G018080 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-26
Identity = 65/153 (42.48%), Postives = 90/153 (58.82%), Query Frame = 0


Query: 35  GASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTG 94
           G  ++    +L ++L+FEV +  +A TLA AACVS+ W + AEDERLWE  C R WAN G
Sbjct: 66  GEGEQPRVPDLGEDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWANLG 125

Query: 95  CGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPW--STFPAMIGSK 154
              +QLR+VVL+LGGFRRLH+++I PL                    W  +  P   G +
Sbjct: 126 FSERQLRAVVLSLGGFRRLHAVYIRPL-------------------QWRGAGVPRQQGRR 185

Query: 155 -PPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE 185
            PP R G+D+V LSLSL SI +++ M    +D+
Sbjct: 186 QPPVRLGRDQVQLSLSLFSIGFFQNMPCPKKDK 199

[Close]

BLAST of CmaCh01G018080 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.1e-11
Identity = 40/135 (29.63%), Postives = 65/135 (48.15%), Query Frame = 0


Query: 43  VNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS 102
           +N   ++L E+ + +D ++L  AACV + W   A ++ +WE +C R  +     +  LRS
Sbjct: 28  INDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRS 87

Query: 103 VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEV 162
           VV ALGG+R L+ L I P                           ++   P   W +D++
Sbjct: 88  VVSALGGYRCLYFLCIRP---------------------------VLARLPKLLWTRDQL 133

Query: 163 HLSLSLLSIRYYEKM 178
            LSLSL  + YYE++
Sbjct: 148 QLSLSLYCVHYYERL 133

[Close]

BLAST of CmaCh01G018080 vs. ExPASy TrEMBL
Match: A0A6J1J293 (F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111481166 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 7.2e-101
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDAT 60
           MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDAT
Sbjct: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDAT 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS 180
           LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS
Sbjct: 121 LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS 180

Query: 181 NRDE 185
           NRDE
Sbjct: 181 NRDE 184

[Close]

BLAST of CmaCh01G018080 vs. ExPASy TrEMBL
Match: A0A6J1FMD6 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111446715 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 1.8e-96
Identity = 179/184 (97.28%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDAT 60
           MKRLVPDGDGERKMGKKLRVDSVDCE    GGGGGASDR GFVNLDDNLLFEVFKHVDAT
Sbjct: 1   MKRLVPDGDGERKMGKKLRVDSVDCE----GGGGGASDRPGFVNLDDNLLFEVFKHVDAT 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS 180
           LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS
Sbjct: 121 LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS 180

Query: 181 NRDE 185
           NRDE
Sbjct: 181 NRDE 180

[Close]

BLAST of CmaCh01G018080 vs. ExPASy TrEMBL
Match: A0A6J1FA22 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 2.0e-79
Identity = 151/182 (82.97%), Postives = 164/182 (90.11%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDAT 60
           MKR+VP+G G+RK  KK R  S DC+      GGG SD+TGF+NLDDNLLFEVFKHVDA 
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCD------GGGVSDKTGFMNLDDNLLFEVFKHVDAR 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS 180
           LTKPQ+ S+S+++SS+SSSSPWS FPAMIGSKPP RWGKDEVHLSLSLLSIRYYEKMNFS
Sbjct: 121 LTKPQS-SSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS 175

Query: 181 NR 183
           +R
Sbjct: 181 SR 175

[Close]

BLAST of CmaCh01G018080 vs. ExPASy TrEMBL
Match: A0A6J1ILD7 (F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.5e-79
Identity = 151/184 (82.07%), Postives = 163/184 (88.59%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDAT 60
           MKR+VP+G G+RK  KK R  S DC+      GGG SD+TGF+NLDDNLLFEVFKHVDA 
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCD------GGGVSDKTGFLNLDDNLLFEVFKHVDAR 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQAPSTSAS--ASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMN 180
           LTKPQ+ S+S+S  +SS+SSSSPWS FPAMIGSKPP RWGKDEVHLSLSLLSIRYYEKMN
Sbjct: 121 LTKPQSSSSSSSSTSSSTSSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN 178

Query: 181 FSNR 183
           F +R
Sbjct: 181 FGSR 178

[Close]

BLAST of CmaCh01G018080 vs. ExPASy TrEMBL
Match: A0A0A0L2H5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 7.7e-79
Identity = 154/190 (81.05%), Postives = 165/190 (86.84%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDAT 60
           MKR+VPDG G+RKMGKK + ++ D     GGGG   SD+TGF+NLDDNLLFEVFKHVDA 
Sbjct: 1   MKRVVPDGVGDRKMGKKPKAETQDFT--RGGGGEDCSDKTGFMNLDDNLLFEVFKHVDAR 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQAPSTSASASSSSSSS--------PWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIR 180
           LTKPQ+ S+S+S+SSSSSSS         WS FPAMIGSKPP RWGKDEVHLSLSLLSIR
Sbjct: 121 LTKPQSSSSSSSSSSSSSSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFSNR 183
           YYEKMNFSNR
Sbjct: 181 YYEKMNFSNR 188

[Close]

BLAST of CmaCh01G018080 vs. NCBI nr
Match: XP_022982290.1 (F-box protein GID2-like [Cucurbita maxima])

HSP 1 Score: 376.3 bits (965), Expect = 1.5e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDAT 60
           MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDAT
Sbjct: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDAT 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS 180
           LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS
Sbjct: 121 LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS 180

Query: 181 NRDE 185
           NRDE
Sbjct: 181 NRDE 184

[Close]

BLAST of CmaCh01G018080 vs. NCBI nr
Match: KAG7037780.1 (F-box protein GID2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 368.2 bits (944), Expect = 4.0e-98
Identity = 182/184 (98.91%), Postives = 182/184 (98.91%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDAT 60
           MKRLVPDGDGERKMGKKLRVDSVDCE  GGGGGGGASDRTGFVNLDDNLLFEVFKHVDAT
Sbjct: 1   MKRLVPDGDGERKMGKKLRVDSVDCE--GGGGGGGASDRTGFVNLDDNLLFEVFKHVDAT 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS 180
           LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS
Sbjct: 121 LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS 180

Query: 181 NRDE 185
           NRDE
Sbjct: 181 NRDE 182

[Close]

BLAST of CmaCh01G018080 vs. NCBI nr
Match: KAG6608444.1 (F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 366.3 bits (939), Expect = 1.5e-97
Identity = 181/184 (98.37%), Postives = 181/184 (98.37%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDAT 60
           MKRLVPDGDGERKMGKKLRVDSVDCE   GGGGGGASDRTGFVNLDDNLLFEVFKHVDAT
Sbjct: 1   MKRLVPDGDGERKMGKKLRVDSVDCE---GGGGGGASDRTGFVNLDDNLLFEVFKHVDAT 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS 180
           LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS
Sbjct: 121 LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS 180

Query: 181 NRDE 185
           NRDE
Sbjct: 181 NRDE 181

[Close]

BLAST of CmaCh01G018080 vs. NCBI nr
Match: XP_023521607.1 (F-box protein GID2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 364.0 bits (933), Expect = 7.6e-97
Identity = 183/188 (97.34%), Postives = 183/188 (97.34%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVDCE---GGGGGGGGGASDRTGFVNLDDNLLFEVFKHV 60
           MKRLVPDGDGERKMGKKLRVDSVDCE   GGGGGGGGGASDRTGFVNLDDNLLFEV KHV
Sbjct: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGGGGASDRTGFVNLDDNLLFEVLKHV 60

Query: 61  DATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLF 120
           DATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLF
Sbjct: 61  DATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLF 120

Query: 121 IWPLTKPQAPSTSASA-SSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEK 180
           IWPLTKPQAPSTSASA SSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEK
Sbjct: 121 IWPLTKPQAPSTSASASSSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEK 180

Query: 181 MNFSNRDE 185
           MNFSNRDE
Sbjct: 181 MNFSNRDE 188

[Close]

BLAST of CmaCh01G018080 vs. NCBI nr
Match: XP_022941417.1 (F-box protein GID2-like [Cucurbita moschata])

HSP 1 Score: 361.7 bits (927), Expect = 3.8e-96
Identity = 179/184 (97.28%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDAT 60
           MKRLVPDGDGERKMGKKLRVDSVDCE    GGGGGASDR GFVNLDDNLLFEVFKHVDAT
Sbjct: 1   MKRLVPDGDGERKMGKKLRVDSVDCE----GGGGGASDRPGFVNLDDNLLFEVFKHVDAT 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS 180
           LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS
Sbjct: 121 LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS 180

Query: 181 NRDE 185
           NRDE
Sbjct: 181 NRDE 180

[Close]

BLAST of CmaCh01G018080 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 182.2 bits (461), Expect = 3.8e-46
Identity = 96/186 (51.61%), Postives = 114/186 (61.29%), Query Frame = 0


Query: 1   MKRLVPD----GDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKH 60
           MKR   D    GD   +  KK++                  +  GF NLD+NL++EV KH
Sbjct: 1   MKRSTTDSDLAGDAHNETNKKMK--------------STEEEEIGFSNLDENLVYEVLKH 60

Query: 61  VDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSL 120
           VDA TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLRSVVLALGGFRRLHSL
Sbjct: 61  VDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSL 120

Query: 121 FIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEK 180
           ++WPL+KP                            P  R+GKDE+ L+LSLLSIRYYEK
Sbjct: 121 YLWPLSKP---------------------------NPRARFGKDELKLTLSLLSIRYYEK 145

Query: 181 MNFSNR 183
           M+F+ R
Sbjct: 181 MSFTKR 145

[Close]

BLAST of CmaCh01G018080 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-12
Identity = 40/135 (29.63%), Postives = 65/135 (48.15%), Query Frame = 0


Query: 43  VNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS 102
           +N   ++L E+ + +D ++L  AACV + W   A ++ +WE +C R  +     +  LRS
Sbjct: 28  INDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRS 87

Query: 103 VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEV 162
           VV ALGG+R L+ L I P                           ++   P   W +D++
Sbjct: 88  VVSALGGYRCLYFLCIRP---------------------------VLARLPKLLWTRDQL 133

Query: 163 HLSLSLLSIRYYEKM 178
            LSLSL  + YYE++
Sbjct: 148 QLSLSLYCVHYYERL 133

[Close]

BLAST of CmaCh01G018080 vs. TAIR 10
Match: AT1G21760.1 (F-box protein 7 )

HSP 1 Score: 43.5 bits (101), Expect = 2.1e-04
Identity = 18/50 (36.00%), Postives = 24/50 (48.00%), Query Frame = 0


Query: 45  LDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTG 95
           L D LLFEVF  +    L  A+CV ++W  T  +   W   C + W   G
Sbjct: 62  LPDELLFEVFARMMPYDLGRASCVCRKWRYTVRNPMFWRNACLKAWQTAG 111

The following BLAST results are available for this feature:

BLAST of CmaCh01G018080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STX3	5.4e-45	51.61	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	1.5e-26	42.48	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9LUB6	5.1e-11	29.63	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]

BLAST of CmaCh01G018080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J293	7.2e-101	100.00	F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111481166 PE=4 SV=1	[more]
A0A6J1FMD6	1.8e-96	97.28	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111446715 PE=4 SV=1	[more]
A0A6J1FA22	2.0e-79	82.97	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1	[more]
A0A6J1ILD7	4.5e-79	82.07	F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1	[more]
A0A0A0L2H5	7.7e-79	81.05	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 ...	[more]

BLAST of CmaCh01G018080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022982290.1	1.5e-100	100.00	F-box protein GID2-like [Cucurbita maxima]	[more]
KAG7037780.1	4.0e-98	98.91	F-box protein GID2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6608444.1	1.5e-97	98.37	F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023521607.1	7.6e-97	97.34	F-box protein GID2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022941417.1	3.8e-96	97.28	F-box protein GID2-like [Cucurbita moschata]	[more]

BLAST of CmaCh01G018080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24210.1	3.8e-46	51.61	F-box family protein	[more]
AT5G48170.1	3.6e-12	29.63	F-box family protein	[more]
AT1G21760.1	2.1e-04	36.00	F-box protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 45..85 e-value: 0.0073 score: 25.5
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 44..86 e-value: 1.5E-7 score: 31.1
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 39..85 score: 9.232525
None	No IPR available	GENE3D	1.20.1280.50		coord: 36..145 e-value: 7.3E-12 score: 47.1
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 36..178
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 36..178
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 36..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G018080.1	CmaCh01G018080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0009845	seed germination
cellular_component	GO:0005634	nucleus
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding