CmaCh01G018040 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G018040
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr01: 12025799 .. 12026888 (+)
RNA-Seq Expression	CmaCh01G018040
Synteny	CmaCh01G018040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTCTAACTTCGACAAGGATTGCTCGAAGAGGGAAAAGGCAGAAGCGAGAGAAGAGAAGAGCCAGGATGGATATGCTGCTACAAATGCTTTATTTACGTAGAGGGTTAAACTGAAAATGACCCTCTGCTTCAGAGGTTGAAGGGACTGAAAGATAGAAAGAAAAGCAGCACGATGGAAGAAAGAATATTAAAAAGGCTTCTGCTGAAAAGGAAAAGTGGCCTCGTCTCGTCTGCTGTGTTGCTGGTCTTGCAGGTTGTCTACTCGATTGCATTTAAGCTTACACTTTTCTTCTTTATCCTTCGATACTGCCCTGCCATGCCATACAAAGCCATATGACTTTTCCTTCATTCAAACACTTTTCTTTCCCTCTGACCTTTCCCTCCAACTAAGCTGAGAAGGCCATTGTTAAGAAGTAAGCAGCCGGGTTTTGTCCTCTGAAACTCCTCTGCTGCCCCCTTCGTTCTCTCTCGCTAACCACTCTATTTCAATATGCCATTTCCAGTGTCCATGGAAGCTCGGCTGCTTCTGTTCATGGCGATTTTCACTCTTCTGGTCTCTGGAGAAAGCAAAGGGACAATGGGGGTCGTCGTCATCCATCAACATCCACTGTCAAAAATGCAGGAGAAGCACCGGAAGCAGCTGCCGTCGCCGCCATGGAGACACTCATTCAGTGCGCTCTTTGCCAGCAAGAGGAAGGTCCCAAACACTTCGGATCCTCTCCATAATCGTTGAAGCGCTCTGGGAATGGAGACTACGTCCGATTGTCGTATGAAATACGGTCGAAATAGTGGTGTTGACTCTATTGGTAGGCGTGACCACGTGGACTTCTGGGTTTGCTTGCCTTCCTTCAGCTTTTTCCTGGGTGCAACCTTTATGGGGAAATGCGTCCTCCTCCTTTGTTTCTTTTTCCAAATAATTTTTGTAAGATTCAATTAAATATATATTATATGCTCTTCAACAGATGTGTTCTCTATTTCTCAAGTTCTCCAAAATCCGCGTTGTGTATGCCCAAAATGATTCTTATTCAGTCTTATGGGTTATTAATGTAGCATTTGTATAGTTGTATATCTATCATTCTTTTCAAG

mRNA sequence

ATGGTCTCTAACTTCGACAAGGATTGCTCGAAGAGGGAAAAGGCAGAAGCGAGAGAAGAGAAGAGCCAGGATGGATATGCTGCTACAAATGCTTTATTTACAAAGAATATTAAAAAGGCTTCTGCTGAAAAGGAAAAGTGGCCTCGTCTCGTCTGCTGTGTTGCTGGTCTTGCAGCTGAGAAGGCCATTGTTAAGAATGTCCATGGAAGCTCGGCTGCTTCTGTTCATGGCGATTTTCACTCTTCTGGTCTCTGGAGAAAGCAAAGGGACAATGGGGGTCGTCGTCATCCATCAACATCCACTGTCAAAAATGCAGGAGAAGCACCGGAAGCAGCTGCCGTCGCCGCCATGGAGACACTCATTCAGTGCGCTCTTTGCCAGCAAGAGGAAGGTCCCAAACACTTCGGATCCTCTCCATAATCGTTGAAGCGCTCTGGGAATGGAGACTACGTCCGATTGTCGTATGAAATACGGTCGAAATAGTGGTGTTGACTCTATTGGTAGGCGTGACCACGTGGACTTCTGGGTTTGCTTGCCTTCCTTCAGCTTTTTCCTGGGTGCAACCTTTATGGGGAAATGCGTCCTCCTCCTTTGTTTCTTTTTCCAAATAATTTTTGTAAGATTCAATTAAATATATATTATATGCTCTTCAACAGATGTGTTCTCTATTTCTCAAGTTCTCCAAAATCCGCGTTGTGTATGCCCAAAATGATTCTTATTCAGTCTTATGGGTTATTAATGTAGCATTTGTATAGTTGTATATCTATCATTCTTTTCAAG

Coding sequence (CDS)

ATGGTCTCTAACTTCGACAAGGATTGCTCGAAGAGGGAAAAGGCAGAAGCGAGAGAAGAGAAGAGCCAGGATGGATATGCTGCTACAAATGCTTTATTTACAAAGAATATTAAAAAGGCTTCTGCTGAAAAGGAAAAGTGGCCTCGTCTCGTCTGCTGTGTTGCTGGTCTTGCAGCTGAGAAGGCCATTGTTAAGAATGTCCATGGAAGCTCGGCTGCTTCTGTTCATGGCGATTTTCACTCTTCTGGTCTCTGGAGAAAGCAAAGGGACAATGGGGGTCGTCGTCATCCATCAACATCCACTGTCAAAAATGCAGGAGAAGCACCGGAAGCAGCTGCCGTCGCCGCCATGGAGACACTCATTCAGTGCGCTCTTTGCCAGCAAGAGGAAGGTCCCAAACACTTCGGATCCTCTCCATAA

Protein sequence

MVSNFDKDCSKREKAEAREEKSQDGYAATNALFTKNIKKASAEKEKWPRLVCCVAGLAAEKAIVKNVHGSSAASVHGDFHSSGLWRKQRDNGGRRHPSTSTVKNAGEAPEAAAVAAMETLIQCALCQQEEGPKHFGSSP

Homology

[Close]

BLAST of CmaCh01G018040 vs. NCBI nr
Match: KAG6608442.1 (Cyclin-A3-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.1 bits (497), Expect = 2.1e-46
Identity = 104/121 (85.95%), Postives = 106/121 (87.60%), Query Frame = 0


Query: 19  EEKSQDGYAATNALFTKNIKKASAEKEKWPRLVCCVAGLAAEKAIVKNVHGSSAASVHGD 78
           +EK  DG         KNIKKASAEKEKWPRLVCCVAGLAAEK IVKNV GSSAASV+GD
Sbjct: 523 KEKQHDG--------RKNIKKASAEKEKWPRLVCCVAGLAAEKTIVKNVRGSSAASVNGD 582

Query: 79  FHSSGLWRKQRDNGGRRHPSTSTVKNAGEAPEAAAVAAMETLIQCALCQQEEGPKHFGSS 138
           F SSGL RKQRDNGGRRHPSTSTVKNAGEAPEAAAVAAMETLIQCALCQQEEGPKHFGSS
Sbjct: 583 FLSSGLRRKQRDNGGRRHPSTSTVKNAGEAPEAAAVAAMETLIQCALCQQEEGPKHFGSS 635

Query: 139 P 140
           P
Sbjct: 643 P 635

[Close]

BLAST of CmaCh01G018040 vs. NCBI nr
Match: KAG7037778.1 (hypothetical protein SDJN02_01409, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-42
Identity = 103/139 (74.10%), Postives = 104/139 (74.82%), Query Frame = 0


Query: 1   MVSNFDKDCSKREKAEAREEKSQDGYAATNALFTKNIKKASAEKEKWPRLVCCVAGLAAE 60
           MVSNFDKDCSKREKAEAREEKSQDGYAATNALFT                          
Sbjct: 1   MVSNFDKDCSKREKAEAREEKSQDGYAATNALFT-------------------------- 60

Query: 61  KAIVKNVHGSSAASVHGDFHSSGLWRKQRDNGGRRHPSTSTVKNAGEAPEAAAVAAMETL 120
                 V GSSAASV+GDF SSGL RKQRDNGGRRHPSTSTVKNAGEAPEAAAVAAMETL
Sbjct: 61  ------VRGSSAASVNGDFLSSGLRRKQRDNGGRRHPSTSTVKNAGEAPEAAAVAAMETL 107

Query: 121 IQCALCQQEEGPKHFGSSP 140
           IQCALCQQEEGPKHFGSSP
Sbjct: 121 IQCALCQQEEGPKHFGSSP 107

[Close]

BLAST of CmaCh01G018040 vs. NCBI nr
Match: KAG6591407.1 (Cyclin-A3-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-16
Identity = 50/80 (62.50%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 64  VKNVHGSSAASVHGDFHSSGLWRKQRDNGGRRHPSTSTVKNAGEAPEAAAV----AAMET 123
           +  +HGSSAASV+G FHSSGLW KQ  NGGRR   TST K AGE+PE AA+    AA+E+
Sbjct: 533 ISTLHGSSAASVNGGFHSSGLWGKQSGNGGRRCRPTSTFKCAGESPEEAAIAIVSAAVES 592

Query: 124 LIQCALCQQEEGPKHFGSSP 140
           ++QCAL +QEEG KH GS+P
Sbjct: 593 VVQCALRKQEEGTKHLGSTP 612

The following BLAST results are available for this feature:

BLAST of CmaCh01G018040 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh01G018040 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh01G018040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608442.1	2.1e-46	85.95	Cyclin-A3-4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7037778.1	1.8e-42	74.10	hypothetical protein SDJN02_01409, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591407.1	2.2e-16	62.50	Cyclin-A3-4, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmaCh01G018040 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G018040.1	CmaCh01G018040.1	mRNA