CmaCh01G017930 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G017930
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	LOB domain-containing protein
Location	Cma_Chr01: 11993723 .. 11995070 (+)
RNA-Seq Expression	CmaCh01G017930
Synteny	CmaCh01G017930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCACAGTCAACACTCTGACATCAAACTTAACCACAGTTACTTTCCTAACTCCAACGCCATTTCAGATTCTTTTAAACACCCTCTGCTTCTGCTTCCGCTTCCCAACGCTCCACCACCTCGCCTCTTCTCAACCACATTATCGTTGCCTTTGCTTCCTTATAAGAATCGCGTGTGATTTTATTAACAATCGGAGAATGAGTTGCAACGGTTGCAGAGTGCTTCGAAAGGGATGCAGTGAAGCTTGCGTTTTAAGGTCAAGTCTTCATTGGATCGACTCGCCGGAAGCCCAAGGCAACGCCACCTTATTTCTTGCTAAATTCTTCGGCCGCAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCCCATCATCAGAGATCCGGTACACATATTTCTTTCTTTTTTTTTCTTTTTACTTCCGAAATGAACTCTTAGATAACCCTGTTCTTGGTTTTTTGAAGCTCTGTTTCAGTCTCTGTTATTCGAAGCTTGCGGCCGTACGGTCAACCCGGTGAGTGGGGCCGTTGGGCTGTTGTCGAGCGGGAATTGGCATGTCTGTCAGGCGGCGGTTGAGACGGTTCTTAGGGGCGGAGTTCCCCGGGAAAACCTCGGAATCGAATTTTCTGGGAATCCCACGGCGGAGACAGAATCCTCTCTCAGTTTGAATACGGATGTTTGGACCAGCACCACTCAGAACATTCAACTTTACCCTTCTAGTCAGTTCGATTCCCGGCGACTTTCCGATCTCAGTCTTGCCACTGGCAAGGGAAAGACCCATCCATTGGAGAATCGACGCTCTCTCGATTCAGAGGAGTCGGTGATGACTAGCTTTGGAAGCGCGGATCATAGAGACGGCGACCGGCGGAAAGAGAGGAAGCTTTTAAACTTATTCATCTGAAGAGAAAAAACAAAGCGAGGAATTTTGTTTGAGATTAGTGGGGGGACGATGGCGGTGTAGAAGTGAGGACAGTGAATAATCCAATGAGTTTTAATAATCAGTTCGTCGGAATGGACCGTCGTAGTGAATTTTGTTCCGGCGCCGAAAACACCGGTTAGTTTTTGGGACTAATTTATCCCTCTTTTTCTTAATTTAGTGAATAATGGACAAAATGATAATATTTGGAACTGTGAAGGCATTGGGAGTGTAAATACATACCCAATAAAAACAAAAAGATTGGAGTCGGTTCATGTTTGTATACATTCTCGTTTTCAAATTTAAAACGCAACCTATTCTATAAGTTAAAACATACGGAAAAACCTCGTATTGTTCTATACAGGAGTATTAGGATTTGTCCTAATGTGAATCCTAGACCTAGGTTGTTACAAATGATATAGCAGTTAGAATGGAAT

mRNA sequence

GTCCACAGTCAACACTCTGACATCAAACTTAACCACAGTTACTTTCCTAACTCCAACGCCATTTCAGATTCTTTTAAACACCCTCTGCTTCTGCTTCCGCTTCCCAACGCTCCACCACCTCGCCTCTTCTCAACCACATTATCGTTGCCTTTGCTTCCTTATAAGAATCGCGTGTGATTTTATTAACAATCGGAGAATGAGTTGCAACGGTTGCAGAGTGCTTCGAAAGGGATGCAGTGAAGCTTGCGTTTTAAGGTCAAGTCTTCATTGGATCGACTCGCCGGAAGCCCAAGGCAACGCCACCTTATTTCTTGCTAAATTCTTCGGCCGCAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCCCATCATCAGAGATCCGCTCTGTTTCAGTCTCTGTTATTCGAAGCTTGCGGCCGTACGGTCAACCCGGTGAGTGGGGCCGTTGGGCTGTTGTCGAGCGGGAATTGGCATGTCTGTCAGGCGGCGGTTGAGACGGTTCTTAGGGGCGGAGTTCCCCGGGAAAACCTCGGAATCGAATTTTCTGGGAATCCCACGGCGGAGACAGAATCCTCTCTCAGTTTGAATACGGATGTTTGGACCAGCACCACTCAGAACATTCAACTTTACCCTTCTAGTCAGTTCGATTCCCGGCGACTTTCCGATCTCAGTCTTGCCACTGGCAAGGGAAAGACCCATCCATTGGAGAATCGACGCTCTCTCGATTCAGAGGAGTCGGTGATGACTAGCTTTGGAAGCGCGGATCATAGAGACGGCGACCGGCGGAAAGAGAGGAAGCTTTTAAACTTATTCATCTGAAGAGAAAAAACAAAGCGAGGAATTTTGTTTGAGATTAGTGGGGGGACGATGGCGGTGTAGAAGTGAGGACAGTGAATAATCCAATGAGTTTTAATAATCAGTTCGTCGGAATGGACCGTCGTAGTGAATTTTGTTCCGGCGCCGAAAACACCGGTTAGTTTTTGGGACTAATTTATCCCTCTTTTTCTTAATTTAGTGAATAATGGACAAAATGATAATATTTGGAACTGTGAAGGCATTGGGAGTGTAAATACATACCCAATAAAAACAAAAAGATTGGAGTCGGTTCATGTTTGTATACATTCTCGTTTTCAAATTTAAAACGCAACCTATTCTATAAGTTAAAACATACGGAAAAACCTCGTATTGTTCTATACAGGAGTATTAGGATTTGTCCTAATGTGAATCCTAGACCTAGGTTGTTACAAATGATATAGCAGTTAGAATGGAAT

Coding sequence (CDS)

ATGAGTTGCAACGGTTGCAGAGTGCTTCGAAAGGGATGCAGTGAAGCTTGCGTTTTAAGGTCAAGTCTTCATTGGATCGACTCGCCGGAAGCCCAAGGCAACGCCACCTTATTTCTTGCTAAATTCTTCGGCCGCAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCCCATCATCAGAGATCCGCTCTGTTTCAGTCTCTGTTATTCGAAGCTTGCGGCCGTACGGTCAACCCGGTGAGTGGGGCCGTTGGGCTGTTGTCGAGCGGGAATTGGCATGTCTGTCAGGCGGCGGTTGAGACGGTTCTTAGGGGCGGAGTTCCCCGGGAAAACCTCGGAATCGAATTTTCTGGGAATCCCACGGCGGAGACAGAATCCTCTCTCAGTTTGAATACGGATGTTTGGACCAGCACCACTCAGAACATTCAACTTTACCCTTCTAGTCAGTTCGATTCCCGGCGACTTTCCGATCTCAGTCTTGCCACTGGCAAGGGAAAGACCCATCCATTGGAGAATCGACGCTCTCTCGATTCAGAGGAGTCGGTGATGACTAGCTTTGGAAGCGCGGATCATAGAGACGGCGACCGGCGGAAAGAGAGGAAGCTTTTAAACTTATTCATCTGA

Protein sequence

MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQRSALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRENLGIEFSGNPTAETESSLSLNTDVWTSTTQNIQLYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEESVMTSFGSADHRDGDRRKERKLLNLFI

Homology

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BLAST of CmaCh01G017930 vs. ExPASy Swiss-Prot
Match: Q9SZE8 (LOB domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=LBD39 PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.5e-45
Identity = 115/240 (47.92%), Postives = 145/240 (60.42%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C+LR  L WI+S E+QG+AT+F+AKFFGR+ L+SFIS+VP  QR
Sbjct: 1   MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPR------ENLGIE 120
            ALFQSLLFEACGRTVNPV+GAVG+L + NWHVCQAAVETVLRGG  R      E+  + 
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDLLESPSLM 120

Query: 121 FSGNPTAE---TESSLSLNTDVWTSTTQNIQLYPSSQFDSRRL---SDLSLATGKGKTHP 180
            S + ++E    + S +       ST+++      S  + +RL   SDL L    G T  
Sbjct: 121 ISCDESSEIWHQDVSRNQTHHCRFSTSRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTLT 180

Query: 181 LE------------------NRRSLDSEESVMTSFGSADHRDGDRRK----ERKLLNLFI 207
                               +R    SEESV TS      R  +++K    E+KLLNLF+
Sbjct: 181 APAVPVPFLPPSSFCKVVKGDRPGSPSEESVTTSCWENGMRGDNKQKRNKGEKKLLNLFV 240

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BLAST of CmaCh01G017930 vs. ExPASy Swiss-Prot
Match: Q9SN23 (LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.3e-44
Identity = 116/246 (47.15%), Postives = 146/246 (59.35%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C+LR  + WI+SPEAQG+AT+F+AKFFGR+ L+SFISAVP  Q 
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGG----VPRENLGIEFS 120
            ALFQSLL+EACGRTVNPV+GAVGLL +GNW+VCQAAVETVLRGG    +P    G  F+
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFA 120

Query: 121 GNPTAETESSLSLNTDVW----TSTTQNIQLYPSSQFDSRRLSDLSLATGKG-------- 180
           G P+  ++ +  + T++        + +  +Y   +F S R    S A+           
Sbjct: 121 GFPSPTSDEASEICTEMLNLRKADDSGDRNIYHHCRFSSSRSRSRSTASPPKRKRLSSEQ 180

Query: 181 ----------------KTHPL-ENRRSLDSEESVMT-SFGSADHRD-------GDRRKER 206
                           KT P  E+  S+ SEESV T SF + +  D       G      
Sbjct: 181 QPSSELDLSLIPIYPIKTLPFKEDTPSMYSEESVTTVSFQNNNAGDRYVRCGGGGGGATT 240

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BLAST of CmaCh01G017930 vs. ExPASy Swiss-Prot
Match: Q9FN11 (LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.9e-44
Identity = 104/197 (52.79%), Postives = 135/197 (68.53%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C+LR  + WI++ +AQG+AT+F+AKFFGR+ L+SFISAVP  QR
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRE-----NLGIEF 120
            ALFQSLL+EACGRTVNPV+GA+G+L +GNW++CQAAVETVLRGG  R        G  F
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGF 120

Query: 121 SG--NPTAETESSL---SLNTDVWTSTTQNIQLYPSSQFDSRRLSDL--SLATGKGKTHP 180
           +G  +PT+E  S +    LN     ST +NI  Y  S+F S R      S +  K K   
Sbjct: 121 AGFPSPTSEEASEICTEMLNLQQNDSTDRNI--YHHSRFSSSRSRSTMDSSSPTKRKRLS 180

Query: 181 LENRRSLDSEESVMTSF 186
            E++ S + + S++ +F
Sbjct: 181 SEDQPSSELDLSLIPNF 195

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BLAST of CmaCh01G017930 vs. ExPASy Swiss-Prot
Match: Q9ZW96 (LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.0e-36
Identity = 69/104 (66.35%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C +R  L WI S E+Q NAT+FLAKF+GR+ L++ ++  P H R
Sbjct: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLR 62

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRG 105
            A+F+SLL+EACGR VNP+ G+VGLL SGNWH+CQAAVE V+RG
Sbjct: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRG 106

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BLAST of CmaCh01G017930 vs. ExPASy Swiss-Prot
Match: Q9M886 (LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.7e-36
Identity = 70/109 (64.22%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C +R  L WI SPEAQ NAT+FLAKF+GR+ L++ I+A P+H R
Sbjct: 3   MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLR 62

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRE 110
             +F+SLL EACGR VNP+ G+VGLL SGNW +CQ AVE V++G   +E
Sbjct: 63  PGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKE 111

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BLAST of CmaCh01G017930 vs. ExPASy TrEMBL
Match: A0A6J1IY30 (LOB domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC111480976 PE=3 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 2.7e-112
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR
Sbjct: 80  MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 139

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRENLGIEFSGNPT 120
           SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRENLGIEFSGNPT
Sbjct: 140 SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRENLGIEFSGNPT 199

Query: 121 AETESSLSLNTDVWTSTTQNIQLYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEES 180
           AETESSLSLNTDVWTSTTQNIQLYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEES
Sbjct: 200 AETESSLSLNTDVWTSTTQNIQLYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEES 259

Query: 181 VMTSFGSADHRDGDRRKERKLLNLFI 207
           VMTSFGSADHRDGDRRKERKLLNLFI
Sbjct: 260 VMTSFGSADHRDGDRRKERKLLNLFI 285

[Close]

BLAST of CmaCh01G017930 vs. ExPASy TrEMBL
Match: A0A6J1FIT3 (LOB domain-containing protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111445767 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 5.7e-107
Identity = 198/206 (96.12%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPE+QGNATLFLAKFFGRSDLLSFISAVPHHQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPHHQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRENLGIEFSGNPT 120
           SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAA ETVLRGGVPR NLGIEFSGNPT
Sbjct: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSGNPT 120

Query: 121 AETESSLSLNTDVWTSTTQNIQLYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEES 180
           AETESSLSLNTDVWTSTTQNIQ YPSS FDSRRLSDLSLATGKGKTH LENRRSLDSEES
Sbjct: 121 AETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHLLENRRSLDSEES 180

Query: 181 VMTSFGSADHRDGDRRKERKLLNLFI 207
           VMTSFGSAD+ DGDRRKERKLLNLFI
Sbjct: 181 VMTSFGSADNSDGDRRKERKLLNLFI 206

[Close]

BLAST of CmaCh01G017930 vs. ExPASy TrEMBL
Match: A0A5A7VDI5 (LOB domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G001480 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 6.4e-82
Identity = 162/207 (78.26%), Postives = 174/207 (84.06%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVP+HQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRENLGIEFSGNPT 120
            ALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAA +T+L GGV R   GIE SGNPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTILNGGVLRPIPGIEISGNPT 120

Query: 121 AE-TESSLSLNTDVWTSTTQNIQLYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEE 180
               +SS + N DVWT+TT N+Q YPS+  D R L DL L   + K HPLENRRSLDSEE
Sbjct: 121 PNLDDSSFTFNNDVWTTTTHNLQFYPSTPSDFRCLPDLGL--NRTKKHPLENRRSLDSEE 180

Query: 181 SVMTSFGSADHRDGDRRKERKLLNLFI 207
           SVMTSFGS D   G++RKE KLLNLF+
Sbjct: 181 SVMTSFGSGDL--GEQRKETKLLNLFV 203

[Close]

BLAST of CmaCh01G017930 vs. ExPASy TrEMBL
Match: A0A1S3BVG9 (LOB domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103493596 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 6.4e-82
Identity = 162/207 (78.26%), Postives = 174/207 (84.06%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVP+HQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRENLGIEFSGNPT 120
            ALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAA +T+L GGV R   GIE SGNPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTILNGGVLRPIPGIEISGNPT 120

Query: 121 AE-TESSLSLNTDVWTSTTQNIQLYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEE 180
               +SS + N DVWT+TT N+Q YPS+  D R L DL L   + K HPLENRRSLDSEE
Sbjct: 121 PNLDDSSFTFNNDVWTTTTHNLQFYPSTPSDFRCLPDLGL--NRTKKHPLENRRSLDSEE 180

Query: 181 SVMTSFGSADHRDGDRRKERKLLNLFI 207
           SVMTSFGS D   G++RKE KLLNLF+
Sbjct: 181 SVMTSFGSGDL--GEQRKETKLLNLFV 203

[Close]

BLAST of CmaCh01G017930 vs. ExPASy TrEMBL
Match: A0A0A0L3S5 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G642430 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.4e-81
Identity = 164/208 (78.85%), Postives = 175/208 (84.13%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVP+HQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRENLGIEFSGNPT 120
            ALFQSLLFEACGRTVNPVSGAVGLLS+GNWHVCQAA +T+L GGV R   GIE S NPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT 120

Query: 121 AE-TESSLSLNTDVWTSTT-QNIQLYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSE 180
               +SSL+ NTDVWT+TT  N+Q YPS+  D R L DLSL   K   HPLENRRSLDSE
Sbjct: 121 PNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLGRAKNH-HPLENRRSLDSE 180

Query: 181 ESVMTSFGSADHRDGDRRKERKLLNLFI 207
           ESVMTSFGS D   GD+RKE KLLNLF+
Sbjct: 181 ESVMTSFGSGDL--GDQRKETKLLNLFV 205

[Close]

BLAST of CmaCh01G017930 vs. NCBI nr
Match: XP_022981991.1 (LOB domain-containing protein 39-like [Cucurbita maxima])

HSP 1 Score: 414.5 bits (1064), Expect = 5.5e-112
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR
Sbjct: 80  MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 139

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRENLGIEFSGNPT 120
           SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRENLGIEFSGNPT
Sbjct: 140 SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRENLGIEFSGNPT 199

Query: 121 AETESSLSLNTDVWTSTTQNIQLYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEES 180
           AETESSLSLNTDVWTSTTQNIQLYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEES
Sbjct: 200 AETESSLSLNTDVWTSTTQNIQLYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEES 259

Query: 181 VMTSFGSADHRDGDRRKERKLLNLFI 207
           VMTSFGSADHRDGDRRKERKLLNLFI
Sbjct: 260 VMTSFGSADHRDGDRRKERKLLNLFI 285

[Close]

BLAST of CmaCh01G017930 vs. NCBI nr
Match: XP_023525090.1 (LOB domain-containing protein 39-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 406.8 bits (1044), Expect = 1.1e-109
Identity = 202/206 (98.06%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRENLGIEFSGNPT 120
           SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAA ETVLRGGVPR NLGIEFSGNPT
Sbjct: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSGNPT 120

Query: 121 AETESSLSLNTDVWTSTTQNIQLYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEES 180
           AETESSLSLNTDVWTSTTQNIQ YPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEES
Sbjct: 121 AETESSLSLNTDVWTSTTQNIQFYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEES 180

Query: 181 VMTSFGSADHRDGDRRKERKLLNLFI 207
           VMTSFGSADH DGDRRKERKLLNLFI
Sbjct: 181 VMTSFGSADHSDGDRRKERKLLNLFI 206

[Close]

BLAST of CmaCh01G017930 vs. NCBI nr
Match: KAG6608433.1 (LOB domain-containing protein 38, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 400.2 bits (1027), Expect = 1.1e-107
Identity = 199/206 (96.60%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRENLGIEFSGNPT 120
           SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAA ETVLRGGVPR NLGIEFSGNPT
Sbjct: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSGNPT 120

Query: 121 AETESSLSLNTDVWTSTTQNIQLYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEES 180
           AETESSLSLNTDVWTSTTQNIQ YPSS FDSRRLSDLSLATGKGKTHPLENRRSLDSEES
Sbjct: 121 AETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHPLENRRSLDSEES 180

Query: 181 VMTSFGSADHRDGDRRKERKLLNLFI 207
           VMTSFGS D+ DGDRRKERKLLNLFI
Sbjct: 181 VMTSFGSTDNSDGDRRKERKLLNLFI 206

[Close]

BLAST of CmaCh01G017930 vs. NCBI nr
Match: KAG7037768.1 (LOB domain-containing protein 38 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 397.5 bits (1020), Expect = 7.0e-107
Identity = 198/206 (96.12%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRENLGIEFSGNPT 120
           SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAA ETVLRGGVPR NLGIEFS NPT
Sbjct: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSRNPT 120

Query: 121 AETESSLSLNTDVWTSTTQNIQLYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEES 180
           AETESSLSLNTDVWTSTTQNIQ YPSS FDSRRLSDLSLATGKGKTHPLENRRSLDS+ES
Sbjct: 121 AETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHPLENRRSLDSDES 180

Query: 181 VMTSFGSADHRDGDRRKERKLLNLFI 207
           VMTSFGSAD+ DGDRRKERKLLNLFI
Sbjct: 181 VMTSFGSADNSDGDRRKERKLLNLFI 206

[Close]

BLAST of CmaCh01G017930 vs. NCBI nr
Match: XP_022940004.1 (LOB domain-containing protein 39-like [Cucurbita moschata])

HSP 1 Score: 396.7 bits (1018), Expect = 1.2e-106
Identity = 198/206 (96.12%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPE+QGNATLFLAKFFGRSDLLSFISAVPHHQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPHHQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRENLGIEFSGNPT 120
           SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAA ETVLRGGVPR NLGIEFSGNPT
Sbjct: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSGNPT 120

Query: 121 AETESSLSLNTDVWTSTTQNIQLYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEES 180
           AETESSLSLNTDVWTSTTQNIQ YPSS FDSRRLSDLSLATGKGKTH LENRRSLDSEES
Sbjct: 121 AETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHLLENRRSLDSEES 180

Query: 181 VMTSFGSADHRDGDRRKERKLLNLFI 207
           VMTSFGSAD+ DGDRRKERKLLNLFI
Sbjct: 181 VMTSFGSADNSDGDRRKERKLLNLFI 206

[Close]

BLAST of CmaCh01G017930 vs. TAIR 10
Match: AT4G37540.1 (LOB domain-containing protein 39 )

HSP 1 Score: 183.0 bits (463), Expect = 2.5e-46
Identity = 115/240 (47.92%), Postives = 145/240 (60.42%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C+LR  L WI+S E+QG+AT+F+AKFFGR+ L+SFIS+VP  QR
Sbjct: 1   MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPR------ENLGIE 120
            ALFQSLLFEACGRTVNPV+GAVG+L + NWHVCQAAVETVLRGG  R      E+  + 
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDLLESPSLM 120

Query: 121 FSGNPTAE---TESSLSLNTDVWTSTTQNIQLYPSSQFDSRRL---SDLSLATGKGKTHP 180
            S + ++E    + S +       ST+++      S  + +RL   SDL L    G T  
Sbjct: 121 ISCDESSEIWHQDVSRNQTHHCRFSTSRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTLT 180

Query: 181 LE------------------NRRSLDSEESVMTSFGSADHRDGDRRK----ERKLLNLFI 207
                               +R    SEESV TS      R  +++K    E+KLLNLF+
Sbjct: 181 APAVPVPFLPPSSFCKVVKGDRPGSPSEESVTTSCWENGMRGDNKQKRNKGEKKLLNLFV 240

[Close]

BLAST of CmaCh01G017930 vs. TAIR 10
Match: AT3G49940.1 (LOB domain-containing protein 38 )

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-45
Identity = 116/246 (47.15%), Postives = 146/246 (59.35%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C+LR  + WI+SPEAQG+AT+F+AKFFGR+ L+SFISAVP  Q 
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGG----VPRENLGIEFS 120
            ALFQSLL+EACGRTVNPV+GAVGLL +GNW+VCQAAVETVLRGG    +P    G  F+
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFA 120

Query: 121 GNPTAETESSLSLNTDVW----TSTTQNIQLYPSSQFDSRRLSDLSLATGKG-------- 180
           G P+  ++ +  + T++        + +  +Y   +F S R    S A+           
Sbjct: 121 GFPSPTSDEASEICTEMLNLRKADDSGDRNIYHHCRFSSSRSRSRSTASPPKRKRLSSEQ 180

Query: 181 ----------------KTHPL-ENRRSLDSEESVMT-SFGSADHRD-------GDRRKER 206
                           KT P  E+  S+ SEESV T SF + +  D       G      
Sbjct: 181 QPSSELDLSLIPIYPIKTLPFKEDTPSMYSEESVTTVSFQNNNAGDRYVRCGGGGGGATT 240

[Close]

BLAST of CmaCh01G017930 vs. TAIR 10
Match: AT5G67420.1 (LOB domain-containing protein 37 )

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-45
Identity = 104/197 (52.79%), Postives = 135/197 (68.53%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C+LR  + WI++ +AQG+AT+F+AKFFGR+ L+SFISAVP  QR
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRE-----NLGIEF 120
            ALFQSLL+EACGRTVNPV+GA+G+L +GNW++CQAAVETVLRGG  R        G  F
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGF 120

Query: 121 SG--NPTAETESSL---SLNTDVWTSTTQNIQLYPSSQFDSRRLSDL--SLATGKGKTHP 180
           +G  +PT+E  S +    LN     ST +NI  Y  S+F S R      S +  K K   
Sbjct: 121 AGFPSPTSEEASEICTEMLNLQQNDSTDRNI--YHHSRFSSSRSRSTMDSSSPTKRKRLS 180

Query: 181 LENRRSLDSEESVMTSF 186
            E++ S + + S++ +F
Sbjct: 181 SEDQPSSELDLSLIPNF 195

[Close]

BLAST of CmaCh01G017930 vs. TAIR 10
Match: AT1G67100.1 (LOB domain-containing protein 40 )

HSP 1 Score: 154.8 bits (390), Expect = 7.3e-38
Identity = 69/104 (66.35%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C +R  L WI S E+Q NAT+FLAKF+GR+ L++ ++  P H R
Sbjct: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLR 62

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRG 105
            A+F+SLL+EACGR VNP+ G+VGLL SGNWH+CQAAVE V+RG
Sbjct: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRG 106

[Close]

BLAST of CmaCh01G017930 vs. TAIR 10
Match: AT3G02550.1 (LOB domain-containing protein 41 )

HSP 1 Score: 152.1 bits (383), Expect = 4.7e-37
Identity = 70/109 (64.22%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C +R  L WI SPEAQ NAT+FLAKF+GR+ L++ I+A P+H R
Sbjct: 3   MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLR 62

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRE 110
             +F+SLL EACGR VNP+ G+VGLL SGNW +CQ AVE V++G   +E
Sbjct: 63  PGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKE 111

The following BLAST results are available for this feature:

BLAST of CmaCh01G017930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZE8	3.5e-45	47.92	LOB domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=LBD39 PE=2 S...	[more]
Q9SN23	2.3e-44	47.15	LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 S...	[more]
Q9FN11	3.9e-44	52.79	LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 S...	[more]
Q9ZW96	1.0e-36	66.35	LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 S...	[more]
Q9M886	6.7e-36	64.22	LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 S...	[more]

BLAST of CmaCh01G017930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IY30	2.7e-112	100.00	LOB domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC11148097...	[more]
A0A6J1FIT3	5.7e-107	96.12	LOB domain-containing protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111445...	[more]
A0A5A7VDI5	6.4e-82	78.26	LOB domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BVG9	6.4e-82	78.26	LOB domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103493596 PE...	[more]
A0A0A0L3S5	1.4e-81	78.85	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G642430 PE=3 SV...	[more]

BLAST of CmaCh01G017930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022981991.1	5.5e-112	100.00	LOB domain-containing protein 39-like [Cucurbita maxima]	[more]
XP_023525090.1	1.1e-109	98.06	LOB domain-containing protein 39-like [Cucurbita pepo subsp. pepo]	[more]
KAG6608433.1	1.1e-107	96.60	LOB domain-containing protein 38, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAG7037768.1	7.0e-107	96.12	LOB domain-containing protein 38 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022940004.1	1.2e-106	96.12	LOB domain-containing protein 39-like [Cucurbita moschata]	[more]

BLAST of CmaCh01G017930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37540.1	2.5e-46	47.92	LOB domain-containing protein 39	[more]
AT3G49940.1	1.6e-45	47.15	LOB domain-containing protein 38	[more]
AT5G67420.1	2.8e-45	52.79	LOB domain-containing protein 37	[more]
AT1G67100.1	7.3e-38	66.35	LOB domain-containing protein 40	[more]
AT3G02550.1	4.7e-37	64.22	LOB domain-containing protein 41	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 2..101 e-value: 5.0E-24 score: 84.8
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 1..107 score: 16.954914
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..193
None	No IPR available	PANTHER	PTHR31304:SF38	LOB DOMAIN-CONTAINING PROTEIN 39-LIKE	coord: 1..206
None	No IPR available	PANTHER	PTHR31304	LOB DOMAIN-CONTAINING PROTEIN 38	coord: 1..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G017930.1	CmaCh01G017930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression