CmaCh01G016580 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G016580
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr01: 11344858 .. 11346835 (-)
RNA-Seq ExpressionCmaCh01G016580
SyntenyCmaCh01G016580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGTGAGTTCTCCCTAAAATAGTTTTAGATGTTTCAGTTAAAATTTGACATTAGCAAAGTTAACGTTTCTTTTCTCATTTTCAGCAAAAGTGGAACTGCCAGTAGACTTAGATCCTTGAAAACTCTACCGACCAAGTCGACTCCAGTTTACAGTTTGCGGTTACAGACAGACCGAACTAGTTTTTTTTTTGCCCCATAACTGTTATCTAAACTTAATGATTTCATTTTCTTTCTGATTAGGAATCTCTTATTTGCAACTGGGGCTCTTTCCAAAAGTGCATTAACTGCTTGACACTCTTCCACAAACTTTGTAATCCTGTTCAATTAAATTTTCCTGATAAGATCTCTTTGAAATGTTCATTTATTGGCTATTTAAGAGTACATCATTTCCAGCCAAGCTTTTTGTGCAGAAGTAAGTCTTGACATTATCTTATCGTTAGAAATTCTGGAGTGATATGACACAATACTTGCAGGCCATCACCTCACCTCAAATGATTGTATTGTAAAAGAGAATAAAGACGAGAAATTTTGCAGCAAAAAGGCAGATTGAGATAAGCAAAAAGTGAAAGGATATGAACTGTTTGTTCAATTGGGTATGTGGAAGTAAGAAAAAAAAAAAAGTGCATCAAAAAAAGGACAAGAACAAGAGTACCGATAAAAAGTGACAAACTTTCACTGTTTCTGAGGGCAGCGGACAGGCTGATAAAGTGGTGCAATTACACCTGAAGTAAAGGTATCTTTTTTCACTTCTGCCATTTCAATTTGAAATTGTACTGTTTTTTTCAGTCTTATTCTTCATTTACAATTTTATGAAAAGAAAGAAAAATGTACATGGAAGCTCATCAAGAACAGTAGATTCTGACTTGGTTCAGGCAATCTTAGAAATGATTCTCATGTTAGCTGTTTATGAGCGCATTTAGTGCTAAAGCTCTGAAGTAAAATTTATACAGCTGCTGTACTTTTCCCTCCACTTCTAAGCATTCAACAACAATCTAACCCTTGTTTTGCTTTCCCAAATCATTATATCATATGTTTAGAGCTTCAAACTTTGCTCCCGTTGGTTGTTTATACTAAAATTTCATTCTCGCTTAGTTTAATGCGAATCGATAAGGTTCGTGTTTTTCTTTCCTGTTTTTGGTGCTAGGTTCTCTCCTTGGTTGGCTCCAGCGTATCGTACTAACCGGTTAGTGATTCAACCACTAGTCACTCAGGTACACATTCTTGAACTGATGCACTGTTTAGAAGTGGGTCTACTTTGGGATGCTGCAAGTATTTTGACATTATCTTAAGTCAGATACCAATAGATTTTCATTTTTTATGATTATTACAGTATGAACACCATGAAACCGGCTAAGGAAATTTAAATTTGTGTACTTCTTCTACAGCAATGTATTATTCAAATTGTATTACCAAACCTACTAACTACTATCCATCTGGGCGCGGAAGTCCAAAAACTAACACGATCGAACTTTAGAGAATATGTTCAATCTAAACTCATTGGCAGCATCAGCCAAACAATCATTTCCTACTTGAAACCAAGCTTTATAAATGAATGCCCAACAAAACATCATGAATCAGAAGTCTAGATTTTGTTTCACGTCTAACCCTTTCTAACCCTTTCGGAGTTTTTATTTGTAGAATGTGTCGTTGTATGATTCTTTTGACCTCGATGACATGGGGACAGCTTCGAGTCAAGCTCCGTCCAAGAATCGGCCATGGTAACTTTATTGTTCTCATTTATCTAGCATATATATAGTCAGAATCATAACTATATCGTTATTTGTAAATTTGTGTGAGATTTTGACAAACTTTGTTGTGGTAAGCAACTCGACCTTGCTACAAGGAGTCGAATAATTGAAGTAATTCACTAGATTTTATGATTCATTTCCATGTGAAGATCTTCATGTACTGATATGATATGAAATTATACCCCAAGAACACAAGAAACTTGTATTTCTTCATTCAGAACACAA

mRNA sequence

ATGAAAACAAAAGTGGAACTGCCAGAATCTCTTATTTGCAACTGGGGCTCTTTCCAAAAGTGCATTAACTGCTTGACACTCTTCCACAAACTTTGTAATCCTGTTCAATTAAATTTTCCTGATAAGATCTCTTTGAAATGTTCATTTATTGGCTATTTAAGAGTACATCATTTCCAGCCAAGCTTTTTGTGCAGAATAAGAAAAAAAAAAAAGTGCATCAAAAAAAGGACAAGAACAAGAGTACCGATAAAAAGTGACAAACTTTCACTGTTTCTGAGGGCAGCGGACAGGCTGATAAAGTGGTTCTCTCCTTGGTTGGCTCCAGCGTATCGTACTAACCGGTTAGTGATTCAACCACTAGTCACTCAGAATGTGTCGTTGTATGATTCTTTTGACCTCGATGACATGGGGACAGCTTCGAGTCAAGCTCCGTCCAAGAATCGGCCATGGTAACTTTATTGTTCTCATTTATCTAGCATATATATAGTCAGAATCATAACTATATCGTTATTTGTAAATTTGTGTGAGATTTTGACAAACTTTGTTGTGGTAAGCAACTCGACCTTGCTACAAGGAGTCGAATAATTGAAGTAATTCACTAGATTTTATGATTCATTTCCATGTGAAGATCTTCATGTACTGATATGATATGAAATTATACCCCAAGAACACAAGAAACTTGTATTTCTTCATTCAGAACACAA

Coding sequence (CDS)

ATGAAAACAAAAGTGGAACTGCCAGAATCTCTTATTTGCAACTGGGGCTCTTTCCAAAAGTGCATTAACTGCTTGACACTCTTCCACAAACTTTGTAATCCTGTTCAATTAAATTTTCCTGATAAGATCTCTTTGAAATGTTCATTTATTGGCTATTTAAGAGTACATCATTTCCAGCCAAGCTTTTTGTGCAGAATAAGAAAAAAAAAAAAGTGCATCAAAAAAAGGACAAGAACAAGAGTACCGATAAAAAGTGACAAACTTTCACTGTTTCTGAGGGCAGCGGACAGGCTGATAAAGTGGTTCTCTCCTTGGTTGGCTCCAGCGTATCGTACTAACCGGTTAGTGATTCAACCACTAGTCACTCAGAATGTGTCGTTGTATGATTCTTTTGACCTCGATGACATGGGGACAGCTTCGAGTCAAGCTCCGTCCAAGAATCGGCCATGGTAA

Protein sequence

MKTKVELPESLICNWGSFQKCINCLTLFHKLCNPVQLNFPDKISLKCSFIGYLRVHHFQPSFLCRIRKKKKCIKKRTRTRVPIKSDKLSLFLRAADRLIKWFSPWLAPAYRTNRLVIQPLVTQNVSLYDSFDLDDMGTASSQAPSKNRPW
Homology
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BLAST of CmaCh01G016580 vs. NCBI nr
Match: KAG7037644.1 (hypothetical protein SDJN02_01273, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.9 bits (167), Expect = 4.1e-08
Identity = 42/88 (47.73%), Postives = 44/88 (50.00%), Query Frame = 0 

Query: 102 FSPWLAPAYRTNRLVIQPLVTQ-------------------------------------- 151
           FSPWLAPA RTN LVIQP+V+Q                                      
Sbjct: 4   FSPWLAPACRTNWLVIQPIVSQLHILELMHCLEVGLLWDAASILTLSKSDANRFSSLMIV 63

The following BLAST results are available for this feature:
BLAST of CmaCh01G016580 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh01G016580 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh01G016580 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037644.14.1e-0847.73hypothetical protein SDJN02_01273, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh01G016580 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G016580.1CmaCh01G016580.1mRNA