CmaCh01G015800 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G015800
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionPantothenate synthetase
LocationCma_Chr01: 10913021 .. 10915912 (-)
RNA-Seq ExpressionCmaCh01G015800
SyntenyCmaCh01G015800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAAGGTGGATAAACATCATTTTCTTGTGCTGTAGCAGCAAGTTCTGTTCGTGCAGTATAATTCGTCCCACGGAGGAATCAGTACTCAACAATGCTGAATCCGACCTCAAATTCAATAACACAGTCGATATCGAAGTTCTTCGTCATACTCATACAGCATCTGTTATTGTAATCATTCATAAGCTTTTTTCAGCAGTTTAGTGTTTATTATGCAAATAAGTTCTACAGCCTCCATTGATTTTTTCTTGTGTGTAGTTCTGGCTTTTCGAAGACCTCGTCATGCACCGGACCCGAATCGAGCTGCCGTTGTTGTAGCTTTCTGGTTTTCGGAACATGTAAGACATCAACTTCTCTGTAAATGTACTGTTTATCCAATCTAATTTATATATATATATATATCATATCTTATTTTCTTCTACAATTTACTTGTGCTGCAAAGTAGAAAGGTAGTGTCGGCAGGCAAAGTAGATTAGAAAATGGTTGAATGTTTTGGGTGGCTTAGATTGTTGGTTCAGATACCTTTTCAATCCTTATTAGAAGAAGGGTTTGGGGGGCCAGGATCTGTTGTGGGCATATGCTGATTCCTTGTTTCTTTTTTGGTTGTGTTTGTGGATAGTGGTGGCTACTGCTATTGCCACCGGTTGGTGGCATGATTTAATGATAAATTTGGCCATTCTTTTCTTGACTGGTCATGTATGGCCCTTTTTTATTAAAGCTTTGTCTTTAGCTTTGTCAACCTCTATCGATCATAAAGCTATGATTTGGCAAACTGTGTCATGACCCACGTCTCTTGCACGTTTTCAAGTTGGCCAAGTTGGACATAGTCTGGATTTTCATGGTAACGAAGTTTTGGTTTTTAGTAGGCCAGGTTTTAGCTTCCTCTAAAGATTATCTCTCTTTCTAAGATATGGGTATCAAATGCTACCTAGGGAAATGCTCTTACGTTGAACTCGGTGACGATAGAGGAACCAACTCGCCTGCTGTGGCGGGGCGGCTTTTTTCTTTCACAATAAGAGACCTGGACGATTATCCCTACTCGTGGTTGAACTCCCCTAGGCTCCGCTCTGTGGTGCGAAACTGTCTCGTAGTAACGTTTTAGTATTCTAGAAGCATTCTTGACTAGTTAAAGAACGCTTTTGTGAGATCCCACATTGGATGACGAAGGGAACGAAGCATTCCTTATAAGGTTATGGAAACTTCTCTCTAACAGATGCGTTTTAAAACTGTGAGACTAACGGTGATATATAACGGGCCAAAGTGGTTAATATTTGCTAGTAGTAGATTTGGGTTGTTACGGCTTCTCCACCTCTTTGTTTATGTTCATGACATCTTTCATGAGGTAATGAAATAGTTTAGATTTGACCCGAGTTTAGTGCAGTGCGCACGCTTGGACATGCTTAAAGCCTTGTGTTTTGAACTATTTTCTTCGTATATGAAAAATCTAAAATCTATTTACATTTTTCTATTGTGTGCCTCGTAAAAGAAACTCACCCTTTTTTTAGCACCTTGGGTCCAAACCCCATTGCATTTTAGTGCGCAAGTGTGAGATTTCATATCGGTTAGTGAGGGAACGATGTGAAAACCTCTTCCTAATAGACGCGTTCTAAAATTTTGAGGGGAAGTCGGAAAAGAAAACCCAAAGAAGACAATATTTACTAGCAGTAGACTTAAACTGTTACATCCACCTATTAAGAAGTTGCTATCGAACAAGCATGTTCTTGGTTTCTTTAGCTGATGAAATTACAGTGAAAAGTGTTTGAGAGCGGCAATTGCTTGAGTTCAAACAAAGTAGAAAGAAATGAAAGAATGAAAGGTAATGATAATAATATACAAGTGAGATTCTTATTATAGTACAGCTTTTCAACAAGTCAATCATCTGGTTCTTCAGAAAAGTCTGGCTCGTCAGGCTTTCTCAGCTTCATTAAGTTAACATCCTTCAGCTTTTGTGCTCCTCTACGTGTGTTTGCAGCAAACCTCGACGCCAATATCGTGACGCCGAGGTTTTGTTTTGCGTGAGAATAATTAGATCGTGGATTATGTTCTTCCTCTTCTAGCTCGGCTTCATCAGCCATTGGCTTTTTGGGATTCAACGAAAAAGACTCCTGAATACTGAGTGTCTTTGCTATGATTCTCCTCTTGAACCGACGCCATGCTGCTTGAATGAAGCAAGCAGCCCATGTTCTCCAGTGGTAAGAGTAAAACCGAAACGTGTGTTGAAGCTTCTTGCTATGGAGACGTCGAAACTGGTTAGCTACGAATTTGAGATCCTCAGCTCGAAGAGCAAAGGCTTCTACTTCAGTGATTGCTCTAACTGTTCTAGTAGAAGATGGCAAGCTGATTGATGATTTTGGTAGCAATGCCCAAGCGAGAAGCTCTTCTCCACAAAAATCTCCAGGTCTCAATGTTATTGAATTGAAGAAACCTGATCTTCCTCCATCTGTCGTGGAACTCTCGAGCATTCCTCGGATGATGAAGAACATCTCGGTAACAGGATCTCCTTCACGAACAATGAACGTGCCTTGCGTACATAAAGACGACGCTAATCGCTCGCAGATTGCGTCGAGAAGCTGATCGTCCATTTGTGCAAAGAAAGGAACCTGAAATTTTGGAAAACAAGAGGTTTCAGTCCTTGAATTTTAGTTTGTAACAACTCAAAGAAAACTTACGCGTCGAACAAGGTCGAGGCACAAGTGACGCTGAATATCTCGACGAAGATCGGTTGGAAGGGCTTGTAAGATGGATTCTTCGTCAACTCCTCTCGTTGCAAGCCACTTATATTGAACAAATCTCCGCACACGTTCTTGTAAATCTTCGGGGAGCTGCCGATGATTCATCCACTCCTCCGTGTCTCGCCGCTTCACCCGCCACTCCTCCAGTCTCACAGTGA

mRNA sequence

ATGGATCAAGTTCTGGCTTTTCGAAGACCTCGTCATGCACCGGACCCGAATCGAGCTGCCGTTGTTGTAGCTTTCTGGTTTTCGGAACATTACAGCTTTTCAACAAGTCAATCATCTGGTTCTTCAGAAAAGTCTGGCTCGTCAGGCTTTCTCAGCTTCATTAAGTTAACATCCTTCAGCTTTTGTGCTCCTCTACGTGTGTTTGCAGCAAACCTCGACGCCAATATCGTGACGCCGAGACTCCTGAATACTGAGTGTCTTTGCTATGATTCTCCTCTTGAACCGACGCCATGCTGCTTGAATGAAGCAAGCAGCCCATGTTCTCCAGTGGTAAGAGTAAAACCGAAACGTGTGTTGAAGCTTCTTGCTATGGAGACGTCGAAACTGGTTAGCTACGAATTTGAGATCCTCAGCTCGAAGAGCAAAGGCTTCTACTTCATAGAAGATGGCAAGCTGATTGATGATTTTGGTAGCAATGCCCAAGCGAGAAGCTCTTCTCCACAAAAATCTCCAGGTCTCAATGTTATTGAATTGAAGAAACCTGATCTTCCTCCATCTGTCGTGGAACTCTCGAGCATTCCTCGGATGATGAAGAACATCTCGACGACGCTAATCGCTCGCAGATTGCGTCGAGAAGCTGATCGTCCATTTGTGCAAAGAAAGGAACCTGAAATTTTGGAAAACAAGAGGTTTCAGTCCTTGAATTTTAAAAACTTACGCGTCGAACAAGGTCGAGGCACAAGTGACGCTGAATATCTCGACGAAGATCGGTTGGAAGGGCTTGTAAGATGGATTCTTCGTCAACTCCTCTCGTTGCAAGCCACTTATATTGAACAAATCTCCGCACACGTTCTTGTAAATCTTCGGGGAGCTGCCGATGATTCATCCACTCCTCCGTGTCTCGCCGCTTCACCCGCCACTCCTCCAGTCTCACAGTGA

Coding sequence (CDS)

ATGGATCAAGTTCTGGCTTTTCGAAGACCTCGTCATGCACCGGACCCGAATCGAGCTGCCGTTGTTGTAGCTTTCTGGTTTTCGGAACATTACAGCTTTTCAACAAGTCAATCATCTGGTTCTTCAGAAAAGTCTGGCTCGTCAGGCTTTCTCAGCTTCATTAAGTTAACATCCTTCAGCTTTTGTGCTCCTCTACGTGTGTTTGCAGCAAACCTCGACGCCAATATCGTGACGCCGAGACTCCTGAATACTGAGTGTCTTTGCTATGATTCTCCTCTTGAACCGACGCCATGCTGCTTGAATGAAGCAAGCAGCCCATGTTCTCCAGTGGTAAGAGTAAAACCGAAACGTGTGTTGAAGCTTCTTGCTATGGAGACGTCGAAACTGGTTAGCTACGAATTTGAGATCCTCAGCTCGAAGAGCAAAGGCTTCTACTTCATAGAAGATGGCAAGCTGATTGATGATTTTGGTAGCAATGCCCAAGCGAGAAGCTCTTCTCCACAAAAATCTCCAGGTCTCAATGTTATTGAATTGAAGAAACCTGATCTTCCTCCATCTGTCGTGGAACTCTCGAGCATTCCTCGGATGATGAAGAACATCTCGACGACGCTAATCGCTCGCAGATTGCGTCGAGAAGCTGATCGTCCATTTGTGCAAAGAAAGGAACCTGAAATTTTGGAAAACAAGAGGTTTCAGTCCTTGAATTTTAAAAACTTACGCGTCGAACAAGGTCGAGGCACAAGTGACGCTGAATATCTCGACGAAGATCGGTTGGAAGGGCTTGTAAGATGGATTCTTCGTCAACTCCTCTCGTTGCAAGCCACTTATATTGAACAAATCTCCGCACACGTTCTTGTAAATCTTCGGGGAGCTGCCGATGATTCATCCACTCCTCCGTGTCTCGCCGCTTCACCCGCCACTCCTCCAGTCTCACAGTGA

Protein sequence

MDQVLAFRRPRHAPDPNRAAVVVAFWFSEHYSFSTSQSSGSSEKSGSSGFLSFIKLTSFSFCAPLRVFAANLDANIVTPRLLNTECLCYDSPLEPTPCCLNEASSPCSPVVRVKPKRVLKLLAMETSKLVSYEFEILSSKSKGFYFIEDGKLIDDFGSNAQARSSSPQKSPGLNVIELKKPDLPPSVVELSSIPRMMKNISTTLIARRLRREADRPFVQRKEPEILENKRFQSLNFKNLRVEQGRGTSDAEYLDEDRLEGLVRWILRQLLSLQATYIEQISAHVLVNLRGAADDSSTPPCLAASPATPPVSQ
Homology
[Close]
BLAST of CmaCh01G015800 vs. ExPASy TrEMBL
Match: A0A371FVE1 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_37119 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-12
Identity = 58/148 (39.19%), Postives = 81/148 (54.73%), Query Frame = 0 

Query: 61  FCAPLR-----VFAANLDANIVTPRLLNTECLCYDSPLEPTPCCLNEASSPCSPVVRVKP 120
           F  PLR       AANL+A IV PRL               PCCL E SSPC+P++R++P
Sbjct: 11  FFVPLRRNNLSALAANLEAYIVAPRL-------------AAPCCLYETSSPCAPLLRIEP 70

Query: 121 KRVLKLLAMETSKLVSYEFEILSSKSKGFYFIEDGKLIDDFGSNAQARSSSPQKSPGLNV 180
           + V +     T+      F+  + ++K    +    ++ + G      SSSPQKSP L  
Sbjct: 71  ESVARRNCDATN------FKSSAFRAKASTSVRVWTVLVEMG------SSSPQKSPALRY 130

Query: 181 IELKKPDLPPSVVELSSIPRMMKNISTT 204
            ELKKP LPP VV ++S+PR+MK+IS+T
Sbjct: 131 SELKKPVLPPFVVMVNSLPRIMKSISST 133

[Close]
BLAST of CmaCh01G015800 vs. ExPASy TrEMBL
Match: A0A3Q7H2P7 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.8e-10
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 0 

Query: 147 IEDGKLIDDFGSNAQARSSSPQKSPGLNVIELKKPDLPPSVVELSSIPRMMKNISTT 204
           +EDG+L  DFGS+AQ RSSSPQKS   N + LKKP LPPSVV LS  PRMMK+IS+T
Sbjct: 24  VEDGRLEPDFGSSAQVRSSSPQKSLSFNKLRLKKPLLPPSVVTLSRRPRMMKSISST 80

[Close]
BLAST of CmaCh01G015800 vs. ExPASy TrEMBL
Match: A0A7I8JP70 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_15017973 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-09
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 147 IEDGKLIDDFGSNAQARSSSPQKSPGLNVIELKKPDLPPSVVELSSIPRMMKNISTT 204
           +E+G+L D+ GS AQ RSSSPQKSP L    LKKP LPP VV LSS+PRMM +IS+T
Sbjct: 41  VEEGRLEDELGSRAQVRSSSPQKSPPLRKSALKKPVLPPLVVALSSVPRMMNSISST 97

[Close]
BLAST of CmaCh01G015800 vs. ExPASy TrEMBL
Match: A0A7I8LH77 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_15019346 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-09
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 147 IEDGKLIDDFGSNAQARSSSPQKSPGLNVIELKKPDLPPSVVELSSIPRMMKNISTT 204
           +E+G+L D+ GS AQ RSSSPQKSP L    LKKP LPP VV LSS+PRMM +IS+T
Sbjct: 41  VEEGRLEDELGSRAQVRSSSPQKSPPLRKSALKKPVLPPLVVALSSVPRMMNSISST 97

[Close]
BLAST of CmaCh01G015800 vs. ExPASy TrEMBL
Match: A0A0P0VQQ0 (Os02g0789150 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0789150 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-08
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 0 

Query: 147 IEDGKLIDDFGSNAQARSSSPQKSPGLNVIELKKPDLPPSVVELSSIPRMMKNISTT 204
           ++DGKL    G+ A   SSSPQKSP   V+ELKKP  PP VVELSS PRMMK+IS T
Sbjct: 8   VDDGKLTVGLGTRAHPSSSSPQKSPDFRVVELKKPVRPPFVVELSSFPRMMKSISVT 64

[Close]
BLAST of CmaCh01G015800 vs. NCBI nr
Match: GEV69576.1 (probable cyclic nucleotide-gated ion channel 14 [Tanacetum cinerariifolium])

HSP 1 Score: 83.6 bits (205), Expect = 3.4e-12
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 147  IEDGKLIDDFGSNAQARSSSPQKSPGLNVIELKKPDLPPSVVELSSIPRMMKNISTT 204
            +EDGK   DFGS A A +SSPQKSPGLNVIELKKP  PP VVELSS+PRMMK+IS T
Sbjct: 2340 VEDGKFKVDFGSRAHASNSSPQKSPGLNVIELKKPVRPPLVVELSSLPRMMKSISET 2396

[Close]
BLAST of CmaCh01G015800 vs. NCBI nr
Match: RDX82130.1 (hypothetical protein CR513_37119, partial [Mucuna pruriens])

HSP 1 Score: 83.2 bits (204), Expect = 4.4e-12
Identity = 58/148 (39.19%), Postives = 81/148 (54.73%), Query Frame = 0 

Query: 61  FCAPLR-----VFAANLDANIVTPRLLNTECLCYDSPLEPTPCCLNEASSPCSPVVRVKP 120
           F  PLR       AANL+A IV PRL               PCCL E SSPC+P++R++P
Sbjct: 11  FFVPLRRNNLSALAANLEAYIVAPRL-------------AAPCCLYETSSPCAPLLRIEP 70

Query: 121 KRVLKLLAMETSKLVSYEFEILSSKSKGFYFIEDGKLIDDFGSNAQARSSSPQKSPGLNV 180
           + V +     T+      F+  + ++K    +    ++ + G      SSSPQKSP L  
Sbjct: 71  ESVARRNCDATN------FKSSAFRAKASTSVRVWTVLVEMG------SSSPQKSPALRY 130

Query: 181 IELKKPDLPPSVVELSSIPRMMKNISTT 204
            ELKKP LPP VV ++S+PR+MK+IS+T
Sbjct: 131 SELKKPVLPPFVVMVNSLPRIMKSISST 133

[Close]
BLAST of CmaCh01G015800 vs. NCBI nr
Match: KAF3782622.1 (hypothetical protein EJ110_NYTH33802 [Nymphaea thermarum])

HSP 1 Score: 73.2 bits (178), Expect = 4.6e-09
Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 0 

Query: 147 IEDGKLIDDFGSNAQARSSSPQKSPGLNVIELKKPDLPPSVVELSSIPRMMKNISTT 204
           +EDG+L  D GS A   SSSPQKSPG   +ELKKP LPP VVELSS PR+M +IS T
Sbjct: 44  VEDGRLPVDLGSKAHESSSSPQKSPGFKAVELKKPVLPPLVVELSSCPRIMNSISVT 100

[Close]
BLAST of CmaCh01G015800 vs. NCBI nr
Match: CAA2632351.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 72.8 bits (177), Expect = 5.9e-09
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 147 IEDGKLIDDFGSNAQARSSSPQKSPGLNVIELKKPDLPPSVVELSSIPRMMKNISTT 204
           +E+G+L D+ GS AQ RSSSPQKSP L    LKKP LPP VV LSS+PRMM +IS+T
Sbjct: 41  VEEGRLEDELGSRAQVRSSSPQKSPPLRKSALKKPVLPPLVVALSSVPRMMNSISST 97

[Close]
BLAST of CmaCh01G015800 vs. NCBI nr
Match: CAA7408668.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 72.8 bits (177), Expect = 5.9e-09
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 147 IEDGKLIDDFGSNAQARSSSPQKSPGLNVIELKKPDLPPSVVELSSIPRMMKNISTT 204
           +E+G+L D+ GS AQ RSSSPQKSP L    LKKP LPP VV LSS+PRMM +IS+T
Sbjct: 41  VEEGRLEDELGSRAQVRSSSPQKSPPLRKSALKKPVLPPLVVALSSVPRMMNSISST 97

The following BLAST results are available for this feature:
BLAST of CmaCh01G015800 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh01G015800 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A371FVE12.1e-1239.19Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_37119 P... [more]
A0A3Q7H2P75.8e-1068.42Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1[more]
A0A7I8JP702.9e-0964.91Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_15017973 PE=4 SV... [more]
A0A7I8LH772.9e-0964.91Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_15019346 PE=4 SV... [more]
A0A0P0VQQ01.4e-0863.16Os02g0789150 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0789150 PE... [more]
BLAST of CmaCh01G015800 vs. NCBI nr
Match NameE-valueIdentityDescription
GEV69576.13.4e-1275.44probable cyclic nucleotide-gated ion channel 14 [Tanacetum cinerariifolium][more]
RDX82130.14.4e-1239.19hypothetical protein CR513_37119, partial [Mucuna pruriens][more]
KAF3782622.14.6e-0964.91hypothetical protein EJ110_NYTH33802 [Nymphaea thermarum][more]
CAA2632351.15.9e-0964.91unnamed protein product [Spirodela intermedia][more]
CAA7408668.15.9e-0964.91unnamed protein product [Spirodela intermedia][more]
BLAST of CmaCh01G015800 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 293..312

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G015800.1CmaCh01G015800.1mRNA