CmaCh01G015780 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G015780
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionserine/arginine-rich splicing factor RSZ22A
LocationCma_Chr01: 10902600 .. 10908483 (+)
RNA-Seq ExpressionCmaCh01G015780
SyntenyCmaCh01G015780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCCGAGATGGAGGCGATGGCGCTTGGATTGGAGGATTCTGGGTGCCCATTTGTGCTAGTCATTAGGTCGAACACTTGGTGTGCACCAAAAGGAATTGGGTCAAAAGGGTTGATTGTGAGGGGGATGGTAGACCAAATCGGGATTCTATTCCACAAAGCGATCGGGGGGTTTCTGAGCCACTGCGGGTGGAACTCGATAATGGAGAGGTTGGCGGCGGCAGTGCCGATTCTGGCGTGGCCAATGATGTCGGAGCAGAAGCTGAATGAGAAATACATATCGGAAGGACTAGGCATTGGGATTGCGATTGAAAGAGGGGAAAATGGGGGCCGATATGCTTCTCGAGAAAAAATCAGTGCGAGTGTGAGAGAATTGATGATCGGAGAGAAGGGGAAGAGGGCGAGAGAAAGGGCCGGAGAATTGGCAAGGGTTGCCCAGCGGGCGGTGCAGGACGGCGGTTCGTCGGATGCGGCTCTGATGAAAAACTTGGTAAAAAAATAAAAAACCATATATTTATTTATTTTTATTTAAATGTTTAATTGTGATAAATTAATAATATTTGCAGGAATTAAATTACGGAGTTCCCCCGCCAGAAGAATATGAATAAATAATAAAGCTGCCGTCTTTTACCACTTTCCCTTACTATTCATTTACTATTATACCCTTATCTCTTTGTCCAAATTACTACTTCCAAGTAATTTAAATTTTATTATAAGTCAAAATAATAATAATAATAATAATGGAAAATTTAAATTTTTATGTCAAATGGAGCCTAACCATGAATTCTTCTTTAAATCAATAAATAAAAATAAAATAGAAGCGTTCGTCGTTGGGACAACACAAGCGTTCGTCGTTGGGACAACACAATTTAAATCTAAATACGTACTCAATTGTAGCAGATCTAAGAAACTATTTAAATTTATACCCATATTTTAACTCTTTGACTCCGTGCATCATATCAATTTTGGGTCAAACTCGAGTTCTAAAACTGACCAATTATATTAAATATTAAATTAATTTCTTAGATTTATTTAAAACCAATTTTTATTAAAAAAAAGTTGGATTTTTATATTGTATTTGATTTAATTTAAAAATTTCAATGAATTTTGTTAGTCTTATTCAATCAAATTATTAACATTAACCCTTTTTTTTACCCTTTTAATTTTTTTTATCAAATATAAAATATATTTGGAAAAAAAATTAATATTTTACTTTATTTAAAAATAATAAATTGATAAAAAAATGACGCAAATGAATTGACACAAGCTATGATTTTGGGCTGAACTTAAATTGAAGCTGGTATGGGCTGGGCTTGGACTGATATTTGGGCCACAAGCCCAATGGTGCTGGCCCATGGCTTCCTCGAGTTGAAAATAAGAATTCGCCAAAATGTTGGGTTAATTTACTAATTTCGAAACTTTGGAGGAGTCCGATCTAAATTCGTCGGACATTTAACACACAACTCCGTAGTTTCCGAAAACCCAAGTGTATCTGAAACTTGAAGAGAGAAACCCGTCGGGCTGCTAGGGTTTTTCCTGCACGTTCATCGTCGTCTCCGATCTGTTCGTATGTCTTCTTGATTTTTTTTTTTTCATATGGATTTTCATGATTGCTTCAAGTAGATTCTCATCTCGAAAGATTTATTGTTATCAAATATCCGGTAATTTTCCGGCGAATTGTTAACCCCATGCTCAGGCTCGATTTTCTGTAGTTGAATTCGAGGAGCAGCCCTTATTTGAACGGCTTCTTTGTTTATTGTATTTTTAGGAGAATAATATGCGAGTAAGTGTATTGTATTGTCTGATTCTTCGTGTAATTGGCAGGTTACTTGGCAAAAAATGTCTCGTGTTTACGTTGGGAATTTGGACCCGAGGGTCTCTGAGCGCGAGCTGGAAGACGAATTTCGTGTATTTGGAGTTATTCGAAGGTATGGTATATTTAACTTTGTGGCCTACTGTTTTATTATTCTTCGTAGTTTGTACAATCTACTACTGTTGGATTCTGAAGCAGATTTCTAACTCCTTCAACTGTTAAATGCCTTTTGTTAGACAAGATACTACGTGTAATTTGGTTAAGTTCACTCTTGATATAAATTCTTACCAGCCACTCTACTTGGCATGCGCACCATGAATTTTATGTTTTCTAGAATTCCGAACATCAAGTTGTTAAGTTTTCTTATTTATCTTCTTATTACCAACTTTTCGGCCGTGGCCGTTCATCCGGAAGTAAATGTCAAATAGTTTTGATTTTATTTCGGGCATCTGTGGACTTCATGGTTTACAGCTGGGAATTGAAGAAGTTTCTGTGTAAGGGAGCTGGAACTTATCTCCATGGAAAAGGGGCAAGAGCCTTTATGTGTTGATAGATGTTTACACCATAGTCCTATAATGCAATGTACTTATTATTCATTAATTGGGTAGTTAGCTAGATTTAAGACCTGGACTTTTAGTGTTTTTTTTTTTCAAGGTTCCATTAGGACAAGATTGTTTCATCATATCTGCATTTTGGTGGTAGCACTTAAGAATGGGAATTGATAACAGTAGAGTATTTATATTTTGACCGAGTGTTTGTTGACACTCCCTGATTCATAATCTGATGACCGTTGAGGATTAAGCTGTTCATAGGGGAAAAGTTCTCCACCTTCTTGGATGTTAGGCCGAGTTATACATATTTTATTTTTTTTAATCAGTTGGTTACCTAATTGCAAATGTTGTGTTTCAGTGTATGGGTTGCACGAAGACCCCCTGGTTATGCCTTTATAGATTTTGATGATCCCAGAGATGCACGGGATGCAATTCATGAATTAGATGGTATGTATGGGTTTTTCTGTTGTTTTGTATTGGTTTTTTTCTTGGTACATGCCGTTGTATTTTGATGCAGTTTTTGTTGTTTGTCATTGGTGCTTTGTTTCATACACATATCTTAACAATGATATTACATAATAGTTTATGCATAACTCAGTAACTGATTCGTTATGTGCTTCTTAAATCTAAGTGTACGAAGTTTAAGCTCATAATGCCTTTTTGCCTTCAGACGAGCTATCGTATCCACTATTATTTTGTTGATCTTTATTCTTCAGTCTATTGTATATAAGCCAGTTTCTATTTTGTGATAGGTTGATGGTTTGTCAGCTTTTCCTTTTTCATAATTTGTGTTTGAGCTTGTTTAGTGATGCCGTGCTTATATTCCCTTGTTTAATGACCGTTAGTATCAGTAAAACTATTTTTGTTCAATGTGATTTTCATGGAAGGATGGATGATATTATTGAAGTTTTTGTTCGTGCATTTCCACTGAGCTGCTGTCACATTTTTGCATTTATGGTTTTTTGTTTGTGATTTATGATTACCGTTGTCAATTCTGATTCAGGAAAGAATGGTTGGAGAGTTGAGCTTTCTCATAATTCTAGAGGTGGTGGTGGAGGTGGCCGAGGAGGGGGTCGTGGTCGTTCTGGGGGTTCTGATCTCAAATGCTATGAATGTGGTGAGCCAGGACATTTTGCTCGTGAATGTCGTTCACGTGGTGGTGGCGGCGGCGGCGGTGGTGCTGGAAGAAGACGTAGCCGCAGTCCACGGTACCGTCGGAGTCCAAGTTATGGTCGCAGGTTTGATCCTTGAATCTTGCAACTTATAGCTTTTATTGTATATTATTTTGAAATTTCTCACATTAGTTTTTTTTCCAAGTTATCTATATTTGGATTTTGTGAATAGTTCCCTTTGGTTTTGTTTATGTTCTTGGATGTTTGACGTCATTAGTGTATTTTCAGGAGTTACAGTCCCCGTGGAAGATCTCCAAGACGCCGCAGCTTGTCACCTCGTGGGCGTAGCTATAGCAGATCACCTCCGTATCGTGGTAGAGAGGAGGTTCCTTATGCCAATGGGTGAGGCTGTCTGATATGTTTTGCTTTGTTACATTTAATTCCTTCTCCATGGATGTGCCTGCCTGGTCTGCGTGCTATAGCTGCAGCAGAAGCTGTTCTCTAAATTTAGTTTTTTTTTTCTTTTTTTATTTTCAATCATCAAAGAAATTGTCTCTTATTTCTTGGATGCATGAAATTTGGTTTGGGTTGTTACTAAACTCAGGATTCTTTTTTCTATACTGTATTTTGGGTGTTTCCCCCTTGGTTGCCCTTATGAATGTTAGAGGTTTTAAGTTTGTTTTTCTTTGACTAGATAATCATGTTTAAGATCTCATTGTGCACCAATTTTGCAATGGGCGGTCTGCATGCTTGCTCAGGGATTCTTTTACTCAAAGCATTAACATGTTTTTAATTATATTCACTGTTTCAATCTTGTGTAGAAATGGTGTAAAGGACCGCCGTCGGAGCAGGAGCTGAGGACTGCAGACTTCTCAACCTGCCTTAGTTAAACACAGGATGTTTAGAGGATTACTCCGATTCTATGTGTTTTTAGTGCTTGGACTTCGTAACGGACCTTTTTAAAATCGGGCGACGCCCTCAGCCTCTACTTTTGAGTTTGGATAAGTCCTTTCTATCTTTAATTTGAATTGTTTTTTCCTTTATCCCTTCAGTATAGTCGTAGGAATCTATATACTAAAATATTTTCAGTTCATATTTATTTTGATAATTTTATTGAGCGAATGTCTTGAAGGGCACTGCTAAAGATGTATGTTTTTTTCCTTGTTGAGGTGTTGTCTCGTCTCGTCTCGTTCTGCTTCACTGCTTTTCTGCTTCTGCCCTATCCTGGGATTTCGTTCTACACCCCCCACCTCTGGGATCTTCAATTTGAAAGGTTGTAGGTCCCAGCCGGCTACTACAAGTGTAGATGCTACTATTTGATTGAATCTCTGCGGTTGTGTTGCACGCTCTCATAATGTTTATGAGATTCCTTTTTTATAAACTTTGAGGCATGAGGAACGGCATCAAATGCTTCTGGCAGGTAAATGAAACTGTTCTACAGAAGTTTGGGTTGGGATTCTTGTACAGAAAATCAGGTTTTTAGGCATTCTTCAAAATACATTCTCTGCATTACATTCTCTTCATGGCATTCATATCATATTAGGAGGAGGATTGGTTTCCCATATCATTTTTTTTTTTTGGTGCACATAATCATTTGAGTTTTGAGAATTATGGTTTTCTGTCAAGTGAGGATGATTAAGACTGGGAGTAAGTTTTATTTCATTTTTTATACATGTTGATTTTCTTTTCCCCTGATTGCAATTACTTGTATGGTGGGTTGGTTGCTGAGCGATGCTCTCTTGGCTATTTCTCTTAAGTCAATTGTCTCAATATGAGCAACTTCTTATCGACCGAGTGCTAGTGGGAGTTCTCTTCCGTGCCCCAAAGTGGTATTTTCCTGCCCTGGTGAATACCATATCGACTACCAATTTCCATGATTCTTTTGATATTGCAATCGTGTTCGAGTTCTGCATCCCTTGTTGAGATGATTTTGGATTATTTCCCATCTGCTTGAAAGTACTTCCATCTCTCACGGAGAAAACATTAGTTCCTGTGGGTTGGCATCAGAACGCTCGTCAAATTCCCTTCCATCTATGCTAGGACGCTACTGCTACGTCTGCTACATAAGCAGGCACAGTCTACGTAGCTAAGATCTGTAATTTGCTTTTCTTTATTCTTTTCCAAAGAATTTTTTTGCCAAGGCTGGACCATTTGAGTTTATAGGTTTGTTACCATATTTGAATAGCCCATAGCTGGAAATGGTATTCACTCTGATGGCTACTGAGTCTTCCTTTCGATTGAGGATTCGTTTAACCGTATTTATAATTTGGACCCTATGGATTCGAAGGGGTTCGGGGAGGGGTAGTGTATTTGAAGGTGCATGTTTTACACACGAAATGGGAATTGTATTTTATGAAATATTGATATTGATGTATTGCAATTTAAAACATGTTGGTATATCGGAAT

mRNA sequence

ATGGACGCCGAGATGGAGGCGATGGCGCTTGGATTGGAGGATTCTGGGTGCCCATTTGTGCTAGTCATTAGGTCGAACACTTGGTGTGCACCAAAAGGAATTGGGTCAAAAGGGTTGATTGTGAGGGGGATGGTAGACCAAATCGGGATTCTATTCCACAAAGCGATCGGGGGGTTTCTGAGCCACTGCGGGTGGAACTCGATAATGGAGAGGTTGGCGGCGGCAGTGCCGATTCTGGCGTGGCCAATGATGTCGGAGCAGAAGCTGAATGAGAAATACATATCGGAAGGACTAGGCATTGGGATTGCGATTGAAAGAGGGGAAAATGGGGGCCGATATGCTTCTCGAGAAAAAATCAGTGCGAGTGTGAGAGAATTGATGATCGGAGAGAAGGGGAAGAGGGCGAGAGAAAGGGCCGGAGAATTGGCAAGGGTTGCCCAGCGGGCGGTGCAGGACGGCGGTTCGTCGGATGCGGCTCTGATGAAAAACTTGGAATTAAATTACGGAGGTTTTTCCTGCACGTTCATCGTCGTCTCCGATCTGTTCGTTACTTGGCAAAAAATGTCTCGTGTTTACGTTGGGAATTTGGACCCGAGGGTCTCTGAGCGCGAGCTGGAAGACGAATTTCGTGTATTTGGAGTTATTCGAAGTGTATGGGTTGCACGAAGACCCCCTGGTTATGCCTTTATAGATTTTGATGATCCCAGAGATGCACGGGATGCAATTCATGAATTAGATGGAAAGAATGGTTGGAGAGTTGAGCTTTCTCATAATTCTAGAGGTGGTGGTGGAGGTGGCCGAGGAGGGGGTCGTGGTCGTTCTGGGGGTTCTGATCTCAAATGCTATGAATGTGGTGAGCCAGGACATTTTGCTCGTGAATGTCGTTCACGTGGTGGTGGCGGCGGCGGCGGTGGTGCTGGAAGAAGACGTAGCCGCAGTCCACGGTACCGTCGGAGTCCAAGTTATGGTCGCAGGAGTTACAGTCCCCGTGGAAGATCTCCAAGACGCCGCAGCTTGTCACCTCGTGGGCGTAGCTATAGCAGATCACCTCCGTATCGTGGTAGAGAGGAGGTTCCTTATGCCAATGGAAATGGTGTAAAGGACCGCCGTCGGAGCAGGAGCTGAGGACTGCAGACTTCTCAACCTGCCTTAGTTAAACACAGGATGTTTAGAGGATTACTCCGATTCTATGTGTTTTTAGTGCTTGGACTTCGTAACGGACCTTTTTAAAATCGGGCGACGCCCTCAGCCTCTACTTTTGAGTTTGGATAAGTCCTTTCTATCTTTAATTTGAATTGTTTTTTCCTTTATCCCTTCAGTATAGTCGTAGGAATCTATATACTAAAATATTTTCAGTTCATATTTATTTTGATAATTTTATTGAGCGAATGTCTTGAAGGGCACTGCTAAAGATGTATGTTTTTTTCCTTGTTGAGGTGTTGTCTCGTCTCGTCTCGTTCTGCTTCACTGCTTTTCTGCTTCTGCCCTATCCTGGGATTTCGTTCTACACCCCCCACCTCTGGGATCTTCAATTTGAAAGGTTGTAGGTCCCAGCCGGCTACTACAAGTGTAGATGCTACTATTTGATTGAATCTCTGCGGTTGTGTTGCACGCTCTCATAATGTTTATGAGATTCCTTTTTTATAAACTTTGAGGCATGAGGAACGGCATCAAATGCTTCTGGCAGTCAATTGTCTCAATATGAGCAACTTCTTATCGACCGAGTGCTAGTGGGAGTTCTCTTCCGTGCCCCAAAGTGGTATTTTCCTGCCCTGGTGAATACCATATCGACTACCAATTTCCATGATTCTTTTGATATTGCAATCGTGTTCGAGTTCTGCATCCCTTGTTGAGATGATTTTGGATTATTTCCCATCTGCTTGAAAGTACTTCCATCTCTCACGGAGAAAACATTAGTTCCTGTGGGTTGGCATCAGAACGCTCGTCAAATTCCCTTCCATCTATGCTAGGACGCTACTGCTACGTCTGCTACATAAGCAGGCACAGTCTACGTAGCTAAGATCTGTAATTTGCTTTTCTTTATTCTTTTCCAAAGAATTTTTTTGCCAAGGCTGGACCATTTGAGTTTATAGGTTTGTTACCATATTTGAATAGCCCATAGCTGGAAATGGTATTCACTCTGATGGCTACTGAGTCTTCCTTTCGATTGAGGATTCGTTTAACCGTATTTATAATTTGGACCCTATGGATTCGAAGGGGTTCGGGGAGGGGTAGTGTATTTGAAGGTGCATGTTTTACACACGAAATGGGAATTGTATTTTATGAAATATTGATATTGATGTATTGCAATTTAAAACATGTTGGTATATCGGAAT

Coding sequence (CDS)

ATGGACGCCGAGATGGAGGCGATGGCGCTTGGATTGGAGGATTCTGGGTGCCCATTTGTGCTAGTCATTAGGTCGAACACTTGGTGTGCACCAAAAGGAATTGGGTCAAAAGGGTTGATTGTGAGGGGGATGGTAGACCAAATCGGGATTCTATTCCACAAAGCGATCGGGGGGTTTCTGAGCCACTGCGGGTGGAACTCGATAATGGAGAGGTTGGCGGCGGCAGTGCCGATTCTGGCGTGGCCAATGATGTCGGAGCAGAAGCTGAATGAGAAATACATATCGGAAGGACTAGGCATTGGGATTGCGATTGAAAGAGGGGAAAATGGGGGCCGATATGCTTCTCGAGAAAAAATCAGTGCGAGTGTGAGAGAATTGATGATCGGAGAGAAGGGGAAGAGGGCGAGAGAAAGGGCCGGAGAATTGGCAAGGGTTGCCCAGCGGGCGGTGCAGGACGGCGGTTCGTCGGATGCGGCTCTGATGAAAAACTTGGAATTAAATTACGGAGGTTTTTCCTGCACGTTCATCGTCGTCTCCGATCTGTTCGTTACTTGGCAAAAAATGTCTCGTGTTTACGTTGGGAATTTGGACCCGAGGGTCTCTGAGCGCGAGCTGGAAGACGAATTTCGTGTATTTGGAGTTATTCGAAGTGTATGGGTTGCACGAAGACCCCCTGGTTATGCCTTTATAGATTTTGATGATCCCAGAGATGCACGGGATGCAATTCATGAATTAGATGGAAAGAATGGTTGGAGAGTTGAGCTTTCTCATAATTCTAGAGGTGGTGGTGGAGGTGGCCGAGGAGGGGGTCGTGGTCGTTCTGGGGGTTCTGATCTCAAATGCTATGAATGTGGTGAGCCAGGACATTTTGCTCGTGAATGTCGTTCACGTGGTGGTGGCGGCGGCGGCGGTGGTGCTGGAAGAAGACGTAGCCGCAGTCCACGGTACCGTCGGAGTCCAAGTTATGGTCGCAGGAGTTACAGTCCCCGTGGAAGATCTCCAAGACGCCGCAGCTTGTCACCTCGTGGGCGTAGCTATAGCAGATCACCTCCGTATCGTGGTAGAGAGGAGGTTCCTTATGCCAATGGAAATGGTGTAAAGGACCGCCGTCGGAGCAGGAGCTGA

Protein sequence

MDAEMEAMALGLEDSGCPFVLVIRSNTWCAPKGIGSKGLIVRGMVDQIGILFHKAIGGFLSHCGWNSIMERLAAAVPILAWPMMSEQKLNEKYISEGLGIGIAIERGENGGRYASREKISASVRELMIGEKGKRARERAGELARVAQRAVQDGGSSDAALMKNLELNYGGFSCTFIVVSDLFVTWQKMSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDGKNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGGGGGGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGVKDRRRSRS
Homology
[Close]
BLAST of CmaCh01G015780 vs. ExPASy Swiss-Prot
Match: O81126 (Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana OX=3702 GN=RSZ22 PE=1 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 8.6e-74
Identity = 160/206 (77.67%), Postives = 168/206 (81.55%), Query Frame = 0 

Query: 188 MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 247
           MSRVYVGNLDPRV+ERELEDEFR FGV+RSVWVARRPPGYAF+DF+DPRDARDAI  LDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 248 KNGWRVELSHN--SRGGGG-----GGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGG 307
           KNGWRVE SHN   RGGGG     GG GGGRG  GGSDLKCYECGE GHFARECR+R   
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNR--- 120

Query: 308 GGGGGAGRRRSRS-----PRYRRSPSYGRRSYSPRGRS---PRRRSLSP---RGRSYSRS 367
              GG GRRRS+S     PRYRRSPSYGRRSYSPR RS   PRRRS SP   RGRSYSRS
Sbjct: 121 ---GGTGRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRS 180

Query: 368 -PPYRGREEVPYANGNGVKDRRRSRS 375
            PPYR REEVPYANGNG+K+RRRSRS
Sbjct: 181 PPPYRAREEVPYANGNGLKERRRSRS 200

[Close]
BLAST of CmaCh01G015780 vs. ExPASy Swiss-Prot
Match: Q9SJA6 (Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana OX=3702 GN=RSZ22A PE=1 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.8e-72
Identity = 160/202 (79.21%), Postives = 169/202 (83.66%), Query Frame = 0 

Query: 188 MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 247
           MSRVYVGNLDPRV+ERELEDEFR FGVIRSVWVARRPPGYAF+DF+D RDARDAI E+DG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60

Query: 248 KNGWRVELSHNSRGGG--GGGRG---GGRGRSGGSDLKCYECGEPGHFARECRSRGGGGG 307
           KNGWRVE SHN  GGG  GGGRG   GGRGR GGSDLKCYECGE GHFARECRSRGG G 
Sbjct: 61  KNGWRVEQSHNRGGGGGRGGGRGGGDGGRGR-GGSDLKCYECGESGHFARECRSRGGSG- 120

Query: 308 GGGAGRRRSRS-----PRYRRSPSY-GRRSYSPRGRS---PRRRSLSPRGRSYSRS-PPY 367
               GRRRSRS     PRYR+SP+Y GRRSYSPR RS   PRRRS SPRGR+YSRS PPY
Sbjct: 121 ----GRRRSRSRSRSPPRYRKSPTYGGRRSYSPRARSPPPPRRRSPSPRGRNYSRSPPPY 180

Query: 368 RGREEVPYANGNGVKDRRRSRS 375
           R R+EVPYANGNG+KD RRSRS
Sbjct: 181 RARDEVPYANGNGLKDVRRSRS 196

[Close]
BLAST of CmaCh01G015780 vs. ExPASy Swiss-Prot
Match: Q69KL9 (Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica OX=39947 GN=RSZ21A PE=2 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 6.4e-61
Identity = 140/195 (71.79%), Postives = 152/195 (77.95%), Query Frame = 0 

Query: 188 MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 247
           M+RVYVGNLDPRV+ RELEDEFRVFGV+RSVWVAR+PPG+AFIDFDD RDA+DAI ++DG
Sbjct: 1   MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDG 60

Query: 248 KNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGGGGGGGAG 307
           KNGWRVELS N+  G      GGR R G S+ KCYECGE GHFARECR R G GG G   
Sbjct: 61  KNGWRVELSRNASSG-----RGGRDRYGSSESKCYECGETGHFARECRLRIGSGGLGSGR 120

Query: 308 RR-----RSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSP-RGRSYSRSPPY-RGREEVP- 367
           RR     RSRSPRYRRSPSYGRRSYSP GRSPRRRS+SP R RSYSRSP Y RGR+E P 
Sbjct: 121 RRSRSRSRSRSPRYRRSPSYGRRSYSPAGRSPRRRSVSPARARSYSRSPQYNRGRDESPA 180

Query: 368 YANGNGVKDRRRSRS 375
           Y NG      RRSRS
Sbjct: 181 YDNG-----YRRSRS 185

[Close]
BLAST of CmaCh01G015780 vs. ExPASy Swiss-Prot
Match: Q6K4N0 (Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp. japonica OX=39947 GN=RSZP21 PE=2 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.4e-60
Identity = 135/193 (69.95%), Postives = 150/193 (77.72%), Query Frame = 0 

Query: 188 MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 247
           M+R+YVGNLDPRV+  ELEDEFRVFGV+RSVWVAR+PPG+AFIDFDD RDA DA+ +LDG
Sbjct: 1   MARLYVGNLDPRVTSGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 60

Query: 248 KNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGGGGGGGAG 307
           KNGWRVELS NS         GGR R GGS++KCYECGE GHFARECR R G GG G   
Sbjct: 61  KNGWRVELSRNS------SSRGGRDRHGGSEMKCYECGETGHFARECRLRIGPGGLGSGK 120

Query: 308 RR-----RSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSP-RGRSYSRSPPYRGREEVPYA 367
           RR     RSRSP+YR+SP+YGRRSYSPR RSPRRRS+SP RGRSYSRSP  RGR   PYA
Sbjct: 121 RRSRSRSRSRSPQYRKSPTYGRRSYSPRDRSPRRRSVSPVRGRSYSRSP--RGRGGSPYA 180

Query: 368 NGNGVKDRRRSRS 375
           +G      RRSRS
Sbjct: 181 DGRDGGRYRRSRS 185

[Close]
BLAST of CmaCh01G015780 vs. ExPASy Swiss-Prot
Match: Q6K9C3 (Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp. japonica OX=39947 GN=RSZ23 PE=2 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.1e-55
Identity = 132/207 (63.77%), Postives = 142/207 (68.60%), Query Frame = 0 

Query: 188 MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 247
           M+RVYVGNLDPRV+ RE+EDEFRVFGV+RSVWVAR+PPG+AFIDFDD RDA DAI +LDG
Sbjct: 1   MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLDG 60

Query: 248 KNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGGGGGGGA- 307
           KNGWRVELS  +      G G GR RSGGSD+KCYECGEPGHFARECR R G GG G   
Sbjct: 61  KNGWRVELSTKA------GSGRGRDRSGGSDMKCYECGEPGHFARECRLRIGSGGLGSGR 120

Query: 308 -------------GRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLS-----PRGRSYSR 363
                        GR RSRSPRYRRSPSYGR   SPR RSP+RRS S      R RSYSR
Sbjct: 121 RRSRSRSRSPRYRGRSRSRSPRYRRSPSYGR---SPRDRSPKRRSYSRSPPPARARSYSR 180

[Close]
BLAST of CmaCh01G015780 vs. ExPASy TrEMBL
Match: A0A6A6LN22 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_008593 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 5.9e-110
Identity = 225/364 (61.81%), Postives = 258/364 (70.88%), Query Frame = 0 

Query: 2   DAEMEAMALGLEDSGCPFVLVIRSNTWCAPKGIGSKGLIVRGMVDQIGILFHKAIGGFLS 61
           D +++ +A GL++SG PFV ++RS TW  P G+  K   ++G                  
Sbjct: 38  DTQLDEVAFGLKESGFPFVWLVRSKTWTLPGGMEEK---IKG------------------ 97

Query: 62  HCGWNSIMERLAAAVPILAWPMMSEQKLNEKYISEGLGIGIAIERGEN--GGRYASREKI 121
                 ++E ++  +P+LAWPM++EQ LN K I +G+G G++++R +N   G   SRE I
Sbjct: 98  -----KVLESVSVGMPLLAWPMIAEQSLNTKLIVDGIGAGLSLKREQNCGSGVVVSREAI 157

Query: 122 SASVRELMIGEKGKRARERAGELARVAQRAVQDGGSSDAALMKNLELNYGGFSCTFIVVS 181
              VRELM GEKG+ A+ERA  L RVA RAVQ+G                          
Sbjct: 158 CEGVRELMEGEKGRNAKERAQALGRVAGRAVQEG-------------------------- 217

Query: 182 DLFVTWQKMSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDAR 241
                   MSRVYVGNLDPRV+ER+LEDEFR FGVIRSVWVARRPPGYAFIDFDD RDA 
Sbjct: 218 ----IIDTMSRVYVGNLDPRVTERDLEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDAE 277

Query: 242 DAIHELDGKNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGG 301
           DAIHELDGKNGWRVELSHNSR GGGGGRGGGRGRSGGSDLKCYECGEPGHFARECR R G
Sbjct: 278 DAIHELDGKNGWRVELSHNSR-GGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRLRVG 337

Query: 302 GGGGGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVP 361
           GGGGGG GRRRSRSPRYRRSPSYGRRSYSPRGRSP+RRSLSP GR YSRSPPYRGREE+P
Sbjct: 338 GGGGGGGGRRRSRSPRYRRSPSYGRRSYSPRGRSPKRRSLSPHGRGYSRSPPYRGREELP 344

Query: 362 YANG 364
           YANG
Sbjct: 398 YANG 344

[Close]
BLAST of CmaCh01G015780 vs. ExPASy TrEMBL
Match: A0A6A6LP46 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_008545 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 7.7e-102
Identity = 223/368 (60.60%), Postives = 245/368 (66.58%), Query Frame = 0 

Query: 2   DAEMEAMALGLEDSGCPFVLVIRSNTWCAPKG----IGSKGLIVRGMVDQIGILFHKAIG 61
           D +++ +A GL++SG PFV ++RS TW  P G    I  KGLI+R  VDQ  I       
Sbjct: 137 DTQLDEVAFGLKESGFPFVWLVRSKTWTLPGGMEEKIKGKGLIIREWVDQRRI------- 196

Query: 62  GFLSHCGWNSIMERLAAAVPILAWPMMSEQKLNEKYISEGLGIGIAIERGEN--GGRYAS 121
             LSH  W                                +G G++++R +N   G   S
Sbjct: 197 --LSHSRW--------------------------------IGAGLSLKREQNCGSGVVVS 256

Query: 122 REKISASVRELMIGEKGKRARERAGELARVAQRAVQDGGSSDAALMKNLELNYGGFSCTF 181
           RE I   VRELM GEKG+ A+ERA  L RVA RAVQ+G                      
Sbjct: 257 REAICEGVRELMEGEKGRNAKERAQALGRVAGRAVQEG---------------------- 316

Query: 182 IVVSDLFVTWQKMSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDP 241
                       MSRVYVGNLDPRV+ER+LEDEFR FGVIRSVWVARRPPGYAFIDFDD 
Sbjct: 317 --------IIDTMSRVYVGNLDPRVTERDLEDEFRRFGVIRSVWVARRPPGYAFIDFDDK 376

Query: 242 RDARDAIHELDGKNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECR 301
           RDA DAIHELDGKNGWRVELSHNSR GGGGGRGGGRGRSGGSDLKCYECGEPGHFARECR
Sbjct: 377 RDAEDAIHELDGKNGWRVELSHNSR-GGGGGRGGGRGRSGGSDLKCYECGEPGHFARECR 432

Query: 302 SRGGGGGGGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGR 361
            R GGGGGGG GRRRSRSPRYRRSPSYGRRSYSPRGRSP+RRSLSP GR YSRSPPYRGR
Sbjct: 437 LRVGGGGGGGGGRRRSRSPRYRRSPSYGRRSYSPRGRSPKRRSLSPHGRGYSRSPPYRGR 432

Query: 362 EEVPYANG 364
           EE+PYANG
Sbjct: 497 EELPYANG 432

[Close]
BLAST of CmaCh01G015780 vs. ExPASy TrEMBL
Match: A0A6J1J0W6 (serine/arginine-rich splicing factor RSZ22-like OS=Cucurbita maxima OX=3661 GN=LOC111480893 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 8.9e-98
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 188 MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 247
           MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 248 KNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGGGGGGGAG 307
           KNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGGGGGGGAG
Sbjct: 61  KNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGGGGGGGAG 120

Query: 308 RRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGVK 367
           RRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGVK
Sbjct: 121 RRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGVK 180

Query: 368 DRRRSRS 375
           DRRRSRS
Sbjct: 181 DRRRSRS 187

[Close]
BLAST of CmaCh01G015780 vs. ExPASy TrEMBL
Match: A0A6J1FS77 (serine/arginine-rich splicing factor RSZ22-like OS=Cucurbita moschata OX=3662 GN=LOC111446389 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 2.8e-96
Identity = 187/189 (98.94%), Postives = 187/189 (98.94%), Query Frame = 0 

Query: 188 MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 247
           MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 248 KNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSR--GGGGGGGG 307
           KNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSR  GGGGGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGGGGGGGGG 120

Query: 308 AGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNG 367
           AGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNG
Sbjct: 121 AGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNG 180

Query: 368 VKDRRRSRS 375
           VKDRRRSRS
Sbjct: 181 VKDRRRSRS 189

[Close]
BLAST of CmaCh01G015780 vs. ExPASy TrEMBL
Match: A0A6J1BUF4 (serine/arginine-rich splicing factor RSZ22-like OS=Momordica charantia OX=3673 GN=LOC111005801 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 1.3e-93
Identity = 183/188 (97.34%), Postives = 184/188 (97.87%), Query Frame = 0 

Query: 188 MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 247
           MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 248 KNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSR-GGGGGGGGA 307
           KNGWRVELSHNSRGGGGG  GGGRGRSGGSDLKCYECGEPGHFARECR R GGGGGGGGA
Sbjct: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGA 120

Query: 308 GRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGV 367
           GRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREE+PYANGNGV
Sbjct: 121 GRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREELPYANGNGV 180

Query: 368 KDRRRSRS 375
           KDRRRSRS
Sbjct: 181 KDRRRSRS 188

[Close]
BLAST of CmaCh01G015780 vs. NCBI nr
Match: KAF2302832.1 (hypothetical protein GH714_008593 [Hevea brasiliensis])

HSP 1 Score: 407.5 bits (1046), Expect = 1.2e-109
Identity = 225/364 (61.81%), Postives = 258/364 (70.88%), Query Frame = 0 

Query: 2   DAEMEAMALGLEDSGCPFVLVIRSNTWCAPKGIGSKGLIVRGMVDQIGILFHKAIGGFLS 61
           D +++ +A GL++SG PFV ++RS TW  P G+  K   ++G                  
Sbjct: 38  DTQLDEVAFGLKESGFPFVWLVRSKTWTLPGGMEEK---IKG------------------ 97

Query: 62  HCGWNSIMERLAAAVPILAWPMMSEQKLNEKYISEGLGIGIAIERGEN--GGRYASREKI 121
                 ++E ++  +P+LAWPM++EQ LN K I +G+G G++++R +N   G   SRE I
Sbjct: 98  -----KVLESVSVGMPLLAWPMIAEQSLNTKLIVDGIGAGLSLKREQNCGSGVVVSREAI 157

Query: 122 SASVRELMIGEKGKRARERAGELARVAQRAVQDGGSSDAALMKNLELNYGGFSCTFIVVS 181
              VRELM GEKG+ A+ERA  L RVA RAVQ+G                          
Sbjct: 158 CEGVRELMEGEKGRNAKERAQALGRVAGRAVQEG-------------------------- 217

Query: 182 DLFVTWQKMSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDAR 241
                   MSRVYVGNLDPRV+ER+LEDEFR FGVIRSVWVARRPPGYAFIDFDD RDA 
Sbjct: 218 ----IIDTMSRVYVGNLDPRVTERDLEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDAE 277

Query: 242 DAIHELDGKNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGG 301
           DAIHELDGKNGWRVELSHNSR GGGGGRGGGRGRSGGSDLKCYECGEPGHFARECR R G
Sbjct: 278 DAIHELDGKNGWRVELSHNSR-GGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRLRVG 337

Query: 302 GGGGGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVP 361
           GGGGGG GRRRSRSPRYRRSPSYGRRSYSPRGRSP+RRSLSP GR YSRSPPYRGREE+P
Sbjct: 338 GGGGGGGGRRRSRSPRYRRSPSYGRRSYSPRGRSPKRRSLSPHGRGYSRSPPYRGREELP 344

Query: 362 YANG 364
           YANG
Sbjct: 398 YANG 344

[Close]
BLAST of CmaCh01G015780 vs. NCBI nr
Match: KAG6608210.1 (Serine/arginine-rich splicing factor RSZ22, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 391.3 bits (1004), Expect = 9.1e-105
Identity = 206/224 (91.96%), Postives = 209/224 (93.30%), Query Frame = 0 

Query: 151 QDGGSSDAALMKNLELNYGGFSCTFIVVSDLFVTWQKMSRVYVGNLDPRVSERELEDEFR 210
           +DGG  D A +    +   GFSCTFIVVSDLFVTWQKMSRVYVGNLDPRVSERELEDEFR
Sbjct: 218 RDGG--DGAWIGGFRVT--GFSCTFIVVSDLFVTWQKMSRVYVGNLDPRVSERELEDEFR 277

Query: 211 VFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDGKNGWRVELSHNSRGGGGGGRGGG 270
           VFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDGKNGWRVELSHNSRGGGGGGRGGG
Sbjct: 278 VFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDGKNGWRVELSHNSRGGGGGGRGGG 337

Query: 271 RGRSGGSDLKCYECGEPGHFARECRSRGGGGGGGGAGRRRSRSPRYRRSPSYGRRSYSPR 330
           RGRSGGSDLKCYECGEPGHFARECRSR   GGGGGAGRRRSRSPRYRRSPSYG RSYSPR
Sbjct: 338 RGRSGGSDLKCYECGEPGHFARECRSR---GGGGGAGRRRSRSPRYRRSPSYGCRSYSPR 397

Query: 331 GRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGVKDRRRSRS 375
           GRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGVKDRRRSRS
Sbjct: 398 GRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGVKDRRRSRS 434

[Close]
BLAST of CmaCh01G015780 vs. NCBI nr
Match: KAF2302814.1 (hypothetical protein GH714_008545 [Hevea brasiliensis])

HSP 1 Score: 380.6 bits (976), Expect = 1.6e-101
Identity = 223/368 (60.60%), Postives = 245/368 (66.58%), Query Frame = 0 

Query: 2   DAEMEAMALGLEDSGCPFVLVIRSNTWCAPKG----IGSKGLIVRGMVDQIGILFHKAIG 61
           D +++ +A GL++SG PFV ++RS TW  P G    I  KGLI+R  VDQ  I       
Sbjct: 137 DTQLDEVAFGLKESGFPFVWLVRSKTWTLPGGMEEKIKGKGLIIREWVDQRRI------- 196

Query: 62  GFLSHCGWNSIMERLAAAVPILAWPMMSEQKLNEKYISEGLGIGIAIERGEN--GGRYAS 121
             LSH  W                                +G G++++R +N   G   S
Sbjct: 197 --LSHSRW--------------------------------IGAGLSLKREQNCGSGVVVS 256

Query: 122 REKISASVRELMIGEKGKRARERAGELARVAQRAVQDGGSSDAALMKNLELNYGGFSCTF 181
           RE I   VRELM GEKG+ A+ERA  L RVA RAVQ+G                      
Sbjct: 257 REAICEGVRELMEGEKGRNAKERAQALGRVAGRAVQEG---------------------- 316

Query: 182 IVVSDLFVTWQKMSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDP 241
                       MSRVYVGNLDPRV+ER+LEDEFR FGVIRSVWVARRPPGYAFIDFDD 
Sbjct: 317 --------IIDTMSRVYVGNLDPRVTERDLEDEFRRFGVIRSVWVARRPPGYAFIDFDDK 376

Query: 242 RDARDAIHELDGKNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECR 301
           RDA DAIHELDGKNGWRVELSHNSR GGGGGRGGGRGRSGGSDLKCYECGEPGHFARECR
Sbjct: 377 RDAEDAIHELDGKNGWRVELSHNSR-GGGGGRGGGRGRSGGSDLKCYECGEPGHFARECR 432

Query: 302 SRGGGGGGGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGR 361
            R GGGGGGG GRRRSRSPRYRRSPSYGRRSYSPRGRSP+RRSLSP GR YSRSPPYRGR
Sbjct: 437 LRVGGGGGGGGGRRRSRSPRYRRSPSYGRRSYSPRGRSPKRRSLSPHGRGYSRSPPYRGR 432

Query: 362 EEVPYANG 364
           EE+PYANG
Sbjct: 497 EELPYANG 432

[Close]
BLAST of CmaCh01G015780 vs. NCBI nr
Match: XP_022981880.1 (serine/arginine-rich splicing factor RSZ22-like [Cucurbita maxima])

HSP 1 Score: 367.1 bits (941), Expect = 1.8e-97
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 188 MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 247
           MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 248 KNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGGGGGGGAG 307
           KNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGGGGGGGAG
Sbjct: 61  KNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGGGGGGGAG 120

Query: 308 RRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGVK 367
           RRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGVK
Sbjct: 121 RRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGVK 180

Query: 368 DRRRSRS 375
           DRRRSRS
Sbjct: 181 DRRRSRS 187

[Close]
BLAST of CmaCh01G015780 vs. NCBI nr
Match: XP_022940964.1 (serine/arginine-rich splicing factor RSZ22-like [Cucurbita moschata] >XP_022940965.1 serine/arginine-rich splicing factor RSZ22-like [Cucurbita moschata])

HSP 1 Score: 362.1 bits (928), Expect = 5.9e-96
Identity = 187/189 (98.94%), Postives = 187/189 (98.94%), Query Frame = 0 

Query: 188 MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 247
           MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 248 KNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSR--GGGGGGGG 307
           KNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSR  GGGGGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGGGGGGGGG 120

Query: 308 AGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNG 367
           AGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNG
Sbjct: 121 AGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNG 180

Query: 368 VKDRRRSRS 375
           VKDRRRSRS
Sbjct: 181 VKDRRRSRS 189

[Close]
BLAST of CmaCh01G015780 vs. TAIR 10
Match: AT4G31580.1 (serine/arginine-rich 22 )

HSP 1 Score: 278.9 bits (712), Expect = 6.1e-75
Identity = 160/206 (77.67%), Postives = 168/206 (81.55%), Query Frame = 0 

Query: 188 MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 247
           MSRVYVGNLDPRV+ERELEDEFR FGV+RSVWVARRPPGYAF+DF+DPRDARDAI  LDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 248 KNGWRVELSHN--SRGGGG-----GGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGG 307
           KNGWRVE SHN   RGGGG     GG GGGRG  GGSDLKCYECGE GHFARECR+R   
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNR--- 120

Query: 308 GGGGGAGRRRSRS-----PRYRRSPSYGRRSYSPRGRS---PRRRSLSP---RGRSYSRS 367
              GG GRRRS+S     PRYRRSPSYGRRSYSPR RS   PRRRS SP   RGRSYSRS
Sbjct: 121 ---GGTGRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRS 180

Query: 368 -PPYRGREEVPYANGNGVKDRRRSRS 375
            PPYR REEVPYANGNG+K+RRRSRS
Sbjct: 181 PPPYRAREEVPYANGNGLKERRRSRS 200

[Close]
BLAST of CmaCh01G015780 vs. TAIR 10
Match: AT4G31580.2 (serine/arginine-rich 22 )

HSP 1 Score: 278.9 bits (712), Expect = 6.1e-75
Identity = 160/206 (77.67%), Postives = 168/206 (81.55%), Query Frame = 0 

Query: 188 MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 247
           MSRVYVGNLDPRV+ERELEDEFR FGV+RSVWVARRPPGYAF+DF+DPRDARDAI  LDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 248 KNGWRVELSHN--SRGGGG-----GGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGG 307
           KNGWRVE SHN   RGGGG     GG GGGRG  GGSDLKCYECGE GHFARECR+R   
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNR--- 120

Query: 308 GGGGGAGRRRSRS-----PRYRRSPSYGRRSYSPRGRS---PRRRSLSP---RGRSYSRS 367
              GG GRRRS+S     PRYRRSPSYGRRSYSPR RS   PRRRS SP   RGRSYSRS
Sbjct: 121 ---GGTGRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRS 180

Query: 368 -PPYRGREEVPYANGNGVKDRRRSRS 375
            PPYR REEVPYANGNG+K+RRRSRS
Sbjct: 181 PPPYRAREEVPYANGNGLKERRRSRS 200

[Close]
BLAST of CmaCh01G015780 vs. TAIR 10
Match: AT2G24590.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein )

HSP 1 Score: 273.9 bits (699), Expect = 2.0e-73
Identity = 160/202 (79.21%), Postives = 169/202 (83.66%), Query Frame = 0 

Query: 188 MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 247
           MSRVYVGNLDPRV+ERELEDEFR FGVIRSVWVARRPPGYAF+DF+D RDARDAI E+DG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60

Query: 248 KNGWRVELSHNSRGGG--GGGRG---GGRGRSGGSDLKCYECGEPGHFARECRSRGGGGG 307
           KNGWRVE SHN  GGG  GGGRG   GGRGR GGSDLKCYECGE GHFARECRSRGG G 
Sbjct: 61  KNGWRVEQSHNRGGGGGRGGGRGGGDGGRGR-GGSDLKCYECGESGHFARECRSRGGSG- 120

Query: 308 GGGAGRRRSRS-----PRYRRSPSY-GRRSYSPRGRS---PRRRSLSPRGRSYSRS-PPY 367
               GRRRSRS     PRYR+SP+Y GRRSYSPR RS   PRRRS SPRGR+YSRS PPY
Sbjct: 121 ----GRRRSRSRSRSPPRYRKSPTYGGRRSYSPRARSPPPPRRRSPSPRGRNYSRSPPPY 180

Query: 368 RGREEVPYANGNGVKDRRRSRS 375
           R R+EVPYANGNG+KD RRSRS
Sbjct: 181 RARDEVPYANGNGLKDVRRSRS 196

[Close]
BLAST of CmaCh01G015780 vs. TAIR 10
Match: AT1G23860.1 (RS-containing zinc finger protein 21 )

HSP 1 Score: 216.1 bits (549), Expect = 4.9e-56
Identity = 130/196 (66.33%), Postives = 141/196 (71.94%), Query Frame = 0 

Query: 188 MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 247
           M+RVYVGNLDPRV+ERELEDEF+ FGV+R+VWVARRPPGYAF++FDD RDA DAI  LD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 248 KNGWRVELSHNSRGGGGGGRGGGRGRSGG-SDLKCYECGEPGHFARECRSRGGGGGGGGA 307
           KNGWRVELSH  +    GGRGGG GR GG  D KCYECGE GHFARECR       G G+
Sbjct: 61  KNGWRVELSHKDK----GGRGGGGGRRGGIEDSKCYECGELGHFARECRR------GRGS 120

Query: 308 GRRRSRSPRYRRSPSYG--RRSYSPRGR--SPRRRSLSP--RGRSYSRSPPYRGR----- 364
            RRRS SPR RRSP YG  RRS SPRGR   PRRRS++P  RGRSYSRSPPYRG      
Sbjct: 121 VRRRSPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRRDSP 180

[Close]
BLAST of CmaCh01G015780 vs. TAIR 10
Match: AT1G23860.2 (RS-containing zinc finger protein 21 )

HSP 1 Score: 216.1 bits (549), Expect = 4.9e-56
Identity = 130/196 (66.33%), Postives = 141/196 (71.94%), Query Frame = 0 

Query: 188 MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 247
           M+RVYVGNLDPRV+ERELEDEF+ FGV+R+VWVARRPPGYAF++FDD RDA DAI  LD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 248 KNGWRVELSHNSRGGGGGGRGGGRGRSGG-SDLKCYECGEPGHFARECRSRGGGGGGGGA 307
           KNGWRVELSH  +    GGRGGG GR GG  D KCYECGE GHFARECR       G G+
Sbjct: 61  KNGWRVELSHKDK----GGRGGGGGRRGGIEDSKCYECGELGHFARECRR------GRGS 120

Query: 308 GRRRSRSPRYRRSPSYG--RRSYSPRGR--SPRRRSLSP--RGRSYSRSPPYRGR----- 364
            RRRS SPR RRSP YG  RRS SPRGR   PRRRS++P  RGRSYSRSPPYRG      
Sbjct: 121 VRRRSPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRRDSP 180

The following BLAST results are available for this feature:
BLAST of CmaCh01G015780 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O811268.6e-7477.67Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana OX=3702 GN=RS... [more]
Q9SJA62.8e-7279.21Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana OX=3702 GN=R... [more]
Q69KL96.4e-6171.79Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica OX=3... [more]
Q6K4N02.4e-6069.95Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp. japonica OX=39... [more]
Q6K9C31.1e-5563.77Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp. japonica OX=39... [more]
BLAST of CmaCh01G015780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A6LN225.9e-11061.81Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_008593 PE=4 SV=1[more]
A0A6A6LP467.7e-10260.60Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_008545 PE=4 SV=1[more]
A0A6J1J0W68.9e-98100.00serine/arginine-rich splicing factor RSZ22-like OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1FS772.8e-9698.94serine/arginine-rich splicing factor RSZ22-like OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1BUF41.3e-9397.34serine/arginine-rich splicing factor RSZ22-like OS=Momordica charantia OX=3673 G... [more]
BLAST of CmaCh01G015780 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF2302832.11.2e-10961.81hypothetical protein GH714_008593 [Hevea brasiliensis][more]
KAG6608210.19.1e-10591.96Serine/arginine-rich splicing factor RSZ22, partial [Cucurbita argyrosperma subs... [more]
KAF2302814.11.6e-10160.60hypothetical protein GH714_008545 [Hevea brasiliensis][more]
XP_022981880.11.8e-97100.00serine/arginine-rich splicing factor RSZ22-like [Cucurbita maxima][more]
XP_022940964.15.9e-9698.94serine/arginine-rich splicing factor RSZ22-like [Cucurbita moschata] >XP_0229409... [more]
BLAST of CmaCh01G015780 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G31580.16.1e-7577.67serine/arginine-rich 22 [more]
AT4G31580.26.1e-7577.67serine/arginine-rich 22 [more]
AT2G24590.12.0e-7379.21RNA recognition motif and CCHC-type zinc finger domains containing protein [more]
AT1G23860.14.9e-5666.33RS-containing zinc finger protein 21 [more]
AT1G23860.24.9e-5666.33RS-containing zinc finger protein 21 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 190..256
e-value: 9.2E-18
score: 75.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 191..248
e-value: 2.2E-15
score: 56.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 189..260
score: 16.107859
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 280..296
e-value: 1.9E-5
score: 34.1
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 280..295
e-value: 1.9E-7
score: 30.8
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 280..296
score: 11.037273
IPR002213UDP-glucuronosyl/UDP-glucosyltransferasePFAMPF00201UDPGTcoord: 5..96
e-value: 8.5E-8
score: 31.4
IPR002213UDP-glucuronosyl/UDP-glucosyltransferaseCDDcd03784GT1_Gtf-likecoord: 2..149
e-value: 3.0063E-31
score: 120.734
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 183..260
e-value: 1.2E-19
score: 72.3
NoneNo IPR availableGENE3D4.10.60.10coord: 275..338
e-value: 2.0E-6
score: 30.0
NoneNo IPR availableGENE3D3.40.50.2000Glycogen Phosphorylase B;coord: 3..151
e-value: 1.7E-51
score: 177.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 253..275
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..374
NoneNo IPR availablePANTHERPTHR23147:SF184SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1coord: 189..366
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 189..366
NoneNo IPR availableCDDcd12373RRM_SRSF3_likecoord: 190..258
e-value: 1.2103E-35
score: 123.114
NoneNo IPR availableSUPERFAMILY53756UDP-Glycosyltransferase/glycogen phosphorylasecoord: 4..165
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 188..275
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 262..301

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G015780.1CmaCh01G015780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006810 transport
cellular_component GO:0016607 nuclear speck
molecular_function GO:0003723 RNA binding
molecular_function GO:0008194 UDP-glycosyltransferase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding