CmaCh01G014910 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G014910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA-directed RNA polymerase subunit beta
Location	Cma_Chr01: 10474171 .. 10476886 (-)
RNA-Seq Expression	CmaCh01G014910
Synteny	CmaCh01G014910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGACCAAATAAAAAGATTAATATTTTAATTTAATCAAAATAAAAATAAAAAAAACAAATCAAAATCGGCGCCTCACCTCCCAAACGCCAATCTATCATCAGCTATCGATTTCATCAGAGACGAAGGAGAAGAAGGAAAGGAAGGGAAATAATCTTCTCCGGCGAGAGGATGTCATGTTGTTCGTCCTTATCAGCGGCTCCTACATCCATGTCTTTGATTTCAAAGCGCAAATTCACGAGATCCGTTAATAAACATGTGATCGTTTCCATGAATTCTCGCTTCAGAGCTTCTGCAGAAGTTCCTGATTTTCTTCCTGCCGATTGGTACGCACACAAACTTCGAGAATTCCGATTTTCGCTGATTCGTTTTTAGTTTTCGAGTTTTTGCGTAGAATTAATCGAGTATAGATTTGATTCCTAGAGGAATGGGAGAATGATTTTGTTCATTTTGAATTATGAATCGATGTATTTAAGATTTTCAATTCACTTCGTGTTTTTATCCAGAAATATGGCGCGACTGTGTTTCCAATGACCTTGAAATTATTGAGTTCAACAAATTGGATGTTTGGTTTCCATGAGGCTCTCTTTTGGCTATTGTGGAAAATTCCTTATTTCTGTATTGTTCGCTGATGTTGAAGTTTCTAGGAAATGTTTGCTTAGGAATCAAATTCCTTATCCATTAGATTGTGCATGATAAGTCGATGAGTTTGGCGGTGTTGGAATTCATATTCCTGCTTTATTTTATCCTTTCATTCTCACAGCCAAACAGTTCCATGAAACTATGTGCGACTTTGGTAGATTTGTGATAGAATCTATTTGTAACAACTCAAGCCTACCACTAACCACAGATATTGTTCTCTTTGGGTTTTCCTTTTCAGACTTTCTCTCAAAGTTTTTAATTTTTAAAGGCATCGGTTAGAGAGAGATTTCCACACTCTCATAAAAAATGTTTCGTTTTCCTTCCCGACCGATGTGGGATCTCGAAATCCACACCCCTTCGTGGCCTAGTGTTCTTTCTGGCACTCATTCTCATCCCATTCTTTCATGGCCCAGCCCACCCCCCTTAGGGGTTTTGCCTCCTCATTAACACATCACCCGATCTTTGGCTCTGACACCATTTGTAAAGCCGAAGCTCCCCGCTAATAGATATTGTCCTATTTGGGTTTTTTCTTTCGGGCTTCTTCTCAAAGTTTTTAAAATGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAAAATGTTTCATTCTCCTCTCCAATCAAGGTGGGATCTCATAGATTCTATTACTGAAATATTTGTTTGGTGAACAAGTTTTTAATATACTATTTCATGTTACAAACTCGTTTCATTCTCCTCCCCAACCGATATGGGATTCCACCACATACATATTCAAATTGTTTTCAAATTTCTGTTTCTTGATCACCCTAAATATTTTACTCTCTTTGGCAGGCATCAAGCACACAAGAAGAATCCTCTAGGCCCAAGTTTACATGTAACTGTTCACCTATGCAAGTTAGTACTAGATATTGTAATTGTTTCTCTGTCAATATCTTTATCTTGAAACTTCCTATATAGTTCACTGCAGAGGAAGCTATTCAACGCCAGCTAGATGCACTGAGGTACAATGATCGACCCCATCAAGATTATGGAATTGAGGTCATGTACCAGGTAGTGTGCATTGTAAAGGGTCTTCATTTCTTCATATTCATTGCTTGTGTAATGACACAGTGGCCTATAAACTAAACATCTCTCAATAAACGACAGTTTGCTGGGTTCAATCCTCTTCAAAGGTCGACATATTTCGGTCCCTTCTTCGATTTGGGACAGGTATAGTGTGAAACTTCAACAATTTATATGAGCAATACTGTATCTGCTCATTCTTTTCTTGATTTGATGCATTTTTTGACAGTGCAGTTTGAAAGATTCAGACGGGTATTCCACCATTCGACGTATCGTGTATTGCTCGGCCATAAAGAGAGAAAGATCTTGAGCAGTTTGATTGTAGAGGAGGTAAAGCAGCCTCCATATTGAGCTTGATTGACTCCTATATCAAGTAGCTAACTTTTGAGTACTTTCTTTGCCAGTAAATTTATGTACTGTAAAATAATATCTTGTGGATTTACAAACTCGGAAACAGAATCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCGAAGGAAGAAGAAATATTTCAATTCACTATGGTTCAGGTTAGGCTATGTCATTTTGAATTTGTTGTGATCGTTAGTAGTCTGCACAGAATGTTATATCACTATACTTTATGCTAACGGAATTCATATTATCACTAGATTGATAATTTCTAAAACTTATTGGCAGAGGGTTGGCGGCTCGTGGGATGGGTATTGGCTTACAGAAAGTGTGCTTAACGATGGAGATGCATTTAGTGGAGGCTTAGCCTACTAAGGAAAAGGATGCTTTGCTCAAATTGGGTGACTGGTTAGTAAACTTAGCATAATGTTGTTCAATTTGTATATTTGAAATGTATATCATAGGTCTGTATTATAATTTGAACCCTTGTAAGATCATAGAACTTAGAATTTGTATATATTATTTACATGGTTTCGTTCTACCTTTGACAGTCTATGTTCGTGTGCATGTGATTAGGGTGTTCTTGTACTAGTTGGGTTGGTCGAGTTTTTAACACTCCCATAAACAAATACGAAGGAATACAAAACAACCTTTTCAGTTG

mRNA sequence

TGGACCAAATAAAAAGATTAATATTTTAATTTAATCAAAATAAAAATAAAAAAAACAAATCAAAATCGGCGCCTCACCTCCCAAACGCCAATCTATCATCAGCTATCGATTTCATCAGAGACGAAGGAGAAGAAGGAAAGGAAGGGAAATAATCTTCTCCGGCGAGAGGATGTCATGTTGTTCGTCCTTATCAGCGGCTCCTACATCCATGTCTTTGATTTCAAAGCGCAAATTCACGAGATCCGTTAATAAACATGTGATCGTTTCCATGAATTCTCGCTTCAGAGCTTCTGCAGAAGTTCCTGATTTTCTTCCTGCCGATTGGCATCAAGCACACAAGAAGAATCCTCTAGGCCCAAGTTTACATTTCACTGCAGAGGAAGCTATTCAACGCCAGCTAGATGCACTGAGGTACAATGATCGACCCCATCAAGATTATGGAATTGAGGTCATGTACCAGTTTGCTGGGTTCAATCCTCTTCAAAGGTCGACATATTTCGGTCCCTTCTTCGATTTGGGACAGTTTGAAAGATTCAGACGGGTATTCCACCATTCGACGTATCGTGTATTGCTCGGCCATAAAGAGAGAAAGATCTTGAGCAGTTTGATTGTAGAGGAGAATCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCGAAGGAAGAAGAAATATTTCAATTCACTATGGTTCAGAGGGTTGGCGGCTCGTGGGATGGGTATTGGCTTACAGAAAGTGTGCTTAACGATGGAGATGCATTTAGTGGAGGCTTAGCCTACTAAGGAAAAGGATGCTTTGCTCAAATTGGGTGACTGGTTAGTAAACTTAGCATAATGTTGTTCAATTTGTATATTTGAAATGTATATCATAGGTCTGTATTATAATTTGAACCCTTGTAAGATCATAGAACTTAGAATTTGTATATATTATTTACATGGTTTCGTTCTACCTTTGACAGTCTATGTTCGTGTGCATGTGATTAGGGTGTTCTTGTACTAGTTGGGTTGGTCGAGTTTTTAACACTCCCATAAACAAATACGAAGGAATACAAAACAACCTTTTCAGTTG

Coding sequence (CDS)

ATGTCATGTTGTTCGTCCTTATCAGCGGCTCCTACATCCATGTCTTTGATTTCAAAGCGCAAATTCACGAGATCCGTTAATAAACATGTGATCGTTTCCATGAATTCTCGCTTCAGAGCTTCTGCAGAAGTTCCTGATTTTCTTCCTGCCGATTGGCATCAAGCACACAAGAAGAATCCTCTAGGCCCAAGTTTACATTTCACTGCAGAGGAAGCTATTCAACGCCAGCTAGATGCACTGAGGTACAATGATCGACCCCATCAAGATTATGGAATTGAGGTCATGTACCAGTTTGCTGGGTTCAATCCTCTTCAAAGGTCGACATATTTCGGTCCCTTCTTCGATTTGGGACAGTTTGAAAGATTCAGACGGGTATTCCACCATTCGACGTATCGTGTATTGCTCGGCCATAAAGAGAGAAAGATCTTGAGCAGTTTGATTGTAGAGGAGAATCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCGAAGGAAGAAGAAATATTTCAATTCACTATGGTTCAGAGGGTTGGCGGCTCGTGGGATGGGTATTGGCTTACAGAAAGTGTGCTTAACGATGGAGATGCATTTAGTGGAGGCTTAGCCTACTAA

Protein sequence

MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDGDAFSGGLAY

Homology

[Close]

BLAST of CmaCh01G014910 vs. ExPASy TrEMBL
Match: A0A6J1IYU2 (uncharacterized protein LOC111480415 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480415 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 2.2e-114
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP
Sbjct: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
           LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE
Sbjct: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG
Sbjct: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTESVLNDGDAFSGGLAY
Sbjct: 181 SWDGYWLTESVLNDGDAFSGGLAY 204

[Close]

BLAST of CmaCh01G014910 vs. ExPASy TrEMBL
Match: A0A6J1FIV8 (uncharacterized protein LOC111445882 OS=Cucurbita moschata OX=3662 GN=LOC111445882 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.5e-112
Identity = 201/204 (98.53%), Postives = 202/204 (99.02%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MSCCSSLSAAPTSMSLISKRKF RSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP
Sbjct: 1   MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
           LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGF+PLQRSTYFGPFFDLGQFE
Sbjct: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFDPLQRSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRRVFHHS YRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG
Sbjct: 121 RFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTESVLNDGDAFSGGLAY
Sbjct: 181 SWDGYWLTESVLNDGDAFSGGLAY 204

[Close]

BLAST of CmaCh01G014910 vs. ExPASy TrEMBL
Match: A0A0A0LED5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878870 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 2.2e-106
Identity = 189/204 (92.65%), Postives = 197/204 (96.57%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MSCCSSLSAAP+SMSLI+ RKFT SVNK +IVSMNSRFRASAEVPDFLPADWH AHKK+P
Sbjct: 1   MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
           +GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAGF+PL+RSTYFGPFFDLGQFE
Sbjct: 61  IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG
Sbjct: 121 RFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+LNDGDAFSGGLAY
Sbjct: 181 SWDGYWLTESLLNDGDAFSGGLAY 204

[Close]

BLAST of CmaCh01G014910 vs. ExPASy TrEMBL
Match: A0A5D3E6H6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007270 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.1e-105
Identity = 188/204 (92.16%), Postives = 195/204 (95.59%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MSCCSSLSAAP+SMSLI+ RKFT SVNK V VSMNSRFR SAEVPDFLPADWH AHKK+P
Sbjct: 1   MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
           +GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAGF+PL+RSTYFGPFFDLGQFE
Sbjct: 61  IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG
Sbjct: 121 RFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+LNDGDAFSGGLAY
Sbjct: 181 SWDGYWLTESLLNDGDAFSGGLAY 204

[Close]

BLAST of CmaCh01G014910 vs. ExPASy TrEMBL
Match: A0A1S3CR52 (uncharacterized protein LOC103503805 OS=Cucumis melo OX=3656 GN=LOC103503805 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.1e-105
Identity = 188/204 (92.16%), Postives = 195/204 (95.59%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MSCCSSLSAAP+SMSLI+ RKFT SVNK V VSMNSRFR SAEVPDFLPADWH AHKK+P
Sbjct: 1   MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
           +GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAGF+PL+RSTYFGPFFDLGQFE
Sbjct: 61  IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG
Sbjct: 121 RFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+LNDGDAFSGGLAY
Sbjct: 181 SWDGYWLTESLLNDGDAFSGGLAY 204

[Close]

BLAST of CmaCh01G014910 vs. NCBI nr
Match: XP_022981205.1 (uncharacterized protein LOC111480415 isoform X1 [Cucurbita maxima])

HSP 1 Score: 421.4 bits (1082), Expect = 4.5e-114
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP
Sbjct: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
           LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE
Sbjct: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG
Sbjct: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTESVLNDGDAFSGGLAY
Sbjct: 181 SWDGYWLTESVLNDGDAFSGGLAY 204

[Close]

BLAST of CmaCh01G014910 vs. NCBI nr
Match: XP_022940177.1 (uncharacterized protein LOC111445882 [Cucurbita moschata] >XP_023524385.1 uncharacterized protein LOC111788292 [Cucurbita pepo subsp. pepo] >KAG6608143.1 hypothetical protein SDJN03_01485, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 415.2 bits (1066), Expect = 3.2e-112
Identity = 201/204 (98.53%), Postives = 202/204 (99.02%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MSCCSSLSAAPTSMSLISKRKF RSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP
Sbjct: 1   MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
           LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGF+PLQRSTYFGPFFDLGQFE
Sbjct: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFDPLQRSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRRVFHHS YRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG
Sbjct: 121 RFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTESVLNDGDAFSGGLAY
Sbjct: 181 SWDGYWLTESVLNDGDAFSGGLAY 204

[Close]

BLAST of CmaCh01G014910 vs. NCBI nr
Match: KAG7031780.1 (hypothetical protein SDJN02_05821, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 412.1 bits (1058), Expect = 2.7e-111
Identity = 200/204 (98.04%), Postives = 201/204 (98.53%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MSCCSSLSAAPTSMSLISKRKF RSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP
Sbjct: 1   MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
           LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGF+PLQRSTYFGPFFDLGQFE
Sbjct: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFDPLQRSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRRVFHHS YRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG
Sbjct: 121 RFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTESVLND DAFSGGLAY
Sbjct: 181 SWDGYWLTESVLNDEDAFSGGLAY 204

[Close]

BLAST of CmaCh01G014910 vs. NCBI nr
Match: XP_004136341.2 (uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus])

HSP 1 Score: 394.8 bits (1013), Expect = 4.5e-106
Identity = 189/204 (92.65%), Postives = 197/204 (96.57%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MSCCSSLSAAP+SMSLI+ RKFT SVNK +IVSMNSRFRASAEVPDFLPADWH AHKK+P
Sbjct: 1   MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
           +GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAGF+PL+RSTYFGPFFDLGQFE
Sbjct: 61  IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG
Sbjct: 121 RFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+LNDGDAFSGGLAY
Sbjct: 181 SWDGYWLTESLLNDGDAFSGGLAY 204

[Close]

BLAST of CmaCh01G014910 vs. NCBI nr
Match: XP_008466381.1 (PREDICTED: uncharacterized protein LOC103503805 [Cucumis melo] >KAA0038797.1 uncharacterized protein E6C27_scaffold92G003520 [Cucumis melo var. makuwa] >TYK31418.1 uncharacterized protein E5676_scaffold455G007270 [Cucumis melo var. makuwa])

HSP 1 Score: 392.5 bits (1007), Expect = 2.2e-105
Identity = 188/204 (92.16%), Postives = 195/204 (95.59%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MSCCSSLSAAP+SMSLI+ RKFT SVNK V VSMNSRFR SAEVPDFLPADWH AHKK+P
Sbjct: 1   MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
           +GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAGF+PL+RSTYFGPFFDLGQFE
Sbjct: 61  IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG
Sbjct: 121 RFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+LNDGDAFSGGLAY
Sbjct: 181 SWDGYWLTESLLNDGDAFSGGLAY 204

[Close]

BLAST of CmaCh01G014910 vs. TAIR 10
Match: AT2G25605.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 75 Blast hits to 75 proteins in 20 species: Archae - 2; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). )

HSP 1 Score: 280.0 bits (715), Expect = 1.5e-75
Identity = 130/198 (65.66%), Postives = 162/198 (81.82%), Query Frame = 0


Query: 7   LSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLH 66
           L + P+S+S   K       N +  ++ N    +S++VPDFL ADW ++ +K P GP L 
Sbjct: 8   LPSPPSSLSANVKH-----FNGYGRLNRNLVRASSSDVPDFLSADWLESRRKRPFGPRLD 67

Query: 67  FTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFERFRRVF 126
           F+AE+A++ QLDAL+YND P  DYGIEVMY+FAGF+P +RSTYFGPFFDLGQFERFRR+F
Sbjct: 68  FSAEDAVRHQLDALKYNDHPRDDYGIEVMYRFAGFDPFERSTYFGPFFDLGQFERFRRIF 127

Query: 127 HHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYW 186
           HHS+YRVLLGHK+RK+LSSL VEENRFKQR+WI+G RP+EEEIF+FTM QR+GGSWDGYW
Sbjct: 128 HHSSYRVLLGHKDRKLLSSLFVEENRFKQRIWIQGNRPEEEEIFEFTMFQRIGGSWDGYW 187

Query: 187 LTESVLNDGDAFSGGLAY 205
           LTES+L+DGD FSGG+AY
Sbjct: 188 LTESLLHDGDVFSGGMAY 200

The following BLAST results are available for this feature:

BLAST of CmaCh01G014910 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh01G014910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IYU2	2.2e-114	100.00	uncharacterized protein LOC111480415 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FIV8	1.5e-112	98.53	uncharacterized protein LOC111445882 OS=Cucurbita moschata OX=3662 GN=LOC1114458...	[more]
A0A0A0LED5	2.2e-106	92.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878870 PE=4 SV=1	[more]
A0A5D3E6H6	1.1e-105	92.16	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CR52	1.1e-105	92.16	uncharacterized protein LOC103503805 OS=Cucumis melo OX=3656 GN=LOC103503805 PE=...	[more]

BLAST of CmaCh01G014910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022981205.1	4.5e-114	100.00	uncharacterized protein LOC111480415 isoform X1 [Cucurbita maxima]	[more]
XP_022940177.1	3.2e-112	98.53	uncharacterized protein LOC111445882 [Cucurbita moschata] >XP_023524385.1 unchar...	[more]
KAG7031780.1	2.7e-111	98.04	hypothetical protein SDJN02_05821, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004136341.2	4.5e-106	92.65	uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus]	[more]
XP_008466381.1	2.2e-105	92.16	PREDICTED: uncharacterized protein LOC103503805 [Cucumis melo] >KAA0038797.1 unc...	[more]

BLAST of CmaCh01G014910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25605.1	1.5e-75	65.66	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35716	OS05G0574700 PROTEIN-RELATED	coord: 1..204
None	No IPR available	PANTHER	PTHR35716:SF1	OS05G0574700 PROTEIN	coord: 1..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G014910.1	CmaCh01G014910.1	mRNA