CmaCh01G014830 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G014830
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr01: 10434952 .. 10439950 (+)
RNA-Seq Expression	CmaCh01G014830
Synteny	CmaCh01G014830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCTCACCTTCTACTTTTTCCTCGTTCGATTCCAGTTTTCAATGGCGTTGAACTAATTCAATTCGTCTCTTACATTGTCTTCGTCGCGTTGCCGTTGACGGTCATTTCCAGATCCCGCCATGGAAGCCCGATGTGAGCATCGAAACGAGCTCCATGATCAGAGCGGCGGTGCGGCCGATCGGTTCGTTTCCGATGAATCTACTGCGGGACTACTGGTCGATGCTTCTGCGGTACCAATGGATTCCACTTTCCGCCATAAGTTTGTTCTATGCTCTGCGGTACCAATGGATGCTTCTGCGGTACTGGTACTTTCTTCTCAGTAGTATTTCTTTGTTCCCCACCCTCCAATATACAACATTGTTTTGGGAATGCAGAGAATTCTAGTTACGTAGTAATTTCATAGGATGAATTTCTTGGGTGATTTCCGGTTCTATCATATATTTCAAATAGCTATTTTCTGTGAGCAAAGTAAAGTTTCATGCTCGTCAAGCTCACCGTTAGTAGATATTATTTCTTACATTTGTTAGGAAAAGATTTCTACACCTGTGTAAAGAAAGTTTTGTCCACCCCAATTGATGCCTTTCTCTTTTCCAATCAATGTGGGATTTCACAATCTACTCCTTTGAAGTCCAGCGTTCTCGTTGAACGTCTAGCTCTAATTACCATTTGTAACAACTCAAGCACACAATTAGCATATATTGTCTCTCCTCCCCAATTGATGTCGTTCCCCTCTCCAATCGATGTGTGATCTCACAATCTACCCTCTTTTGGGGCCAGCGTCCTCATTGGTATATCGCTCATGTTAGGCTCTAATACCATGTGTAACAACCCAAGTCCACCACTGACAATATATTGTCTTCTTTGGACTTTCTTTCAAAAATCTTAAAAAGCTTATGCTAGCTATGTTTTCAGGCTAGATGTTTTCATACTTTTATAAGGAATGTTTTGTTTCCCTCTTCAACTGATATGGGATCTGACAATCCACCCTTTGGAGACCAGTGTCCTCACTGACACATATGTTTTGATTCCTTCTATAACTGATGAGGGATCTGACAATCCACTCCCTTGGAGACCAGCGTCCTCACGTCCTCATTGACACACAGCCTGATGTCTAGCTTTTGTACTAATTTATAACAGAGCAAGCACCACTATAAAATATTGTCCTTTTTTGACCTTTTTCAAGGACTTCCTCTTAAGATACCCTTATAAAGAACGTTTTATTTCTCTCTCCAATTGAGGTGGGATCTCACAAAGAAGTTACCATCGGTCCTTCGCTGTGCCGATCCTGTCATACCTTTCATAAGGCGATCATCCATTTTAATATTTATAGTAACCATTTTATAAAATCTGCTCTTCCTTTGAAGCCTGGTGGTGAAGTGATCATACCTGTGACCTTAAAGGCCTGGCAGCTTGGGTTGGCTGATTCTGATATTAAGGCACTCCAAGGATGGTAGCGAGCCCTAGTTTCTGGATACATTATGCAGGTATTTATTTCTGACATTCTGCTCTTGTATTTCCTTTACTTAGTTCATTATCAAATTCATTTGTATGCATTCTATGATGCTCAAGCTCATAAATATTGTAACCCTATTCATTAATCCATGTTTTGGAATAGTGTCAATTTGATTTAAGTTATTTGTATTCTATTTATAATTCTTATTTTACCTCGCATTAACGTTCTTCTTTCATATGTATCTATCGGTTAACTCATTATAGCGCATCGGTTTATCGAGGGGATTCATCTCTCAAAGTAGAGGAGCAGTCTTTCATTTGGTAAAGACATGAGTAGTTTACATTCTTCTGTTAGTAACCTTGAGTTATTGTGTGAGATTTTACCTTGGTTAGAAAGGAGCATTCTTTATAAGGATGTGAAAACCTCTTCCTACCAGATGCGTTTTAAACCTTAAACCCTTGAGGAAAAGCCCGAAAGAGAAAAAGAACTTAAGAGGACATTATATGCTGGTCGTGAGTTTGGGCTTGGGGTTACAAATATCATAAGAGCTAGAAACTAGGTGGTGTGCTAGCGAAGATGTTGGGCCTCCAAGGAGGTGGATTATGAGATCCCCACGTTGGTTAGAGAGGAGAACGAAACATTGTTTATAAGAGCGTAGAAACTTCTCCCCAACATACGCGTTTTTTAAAATCCCGAGGGGAAGCACGAAAGGAATAAAGAGAATAATATCTACTAGCGGTGGGATTGGACTGTTACAAAAAGCCAGACTCCAGGCGGTGTGATAGTGAGGACTCTGGGCCTCTAATGAGGTGGATTGTGAGATTACACATTGATTGAAGAGTGGAACGAAGCATTACTTTCATGCTTGAGCCATGGGCACGTGACTTTCACTTCAATCTATCTTACCTTCCATCCGTATTTGTTTGTATAGCCAGTTCATAACCAAATGTTAAATCGGGTTCTGGCACAAACAACTTTTTTTTGTTCCGAATTAGGAAAAGAAAACTCCAATGATCAAGTACTTTAGCTCCCAGAAGTAGAGACCGAACAACCTCCTAGTTGTTGAGGACACATCTGAAGAGTCTTAGTAGTATTTAGGATTTAATATCTAAGTTGGAGAGTTCGTTTCTTAACCATAGTTCTAAAAATTTAGAAATATGTCAAAAATTATAACCAAGGACCAAGTGGATCAAAGATTTGACATAAAGTTCATTGAAGAGAAGAGGATTTATTCGACCATCACTTCCTTTCGAATACGACTAAAAAATATTTTAAATTATCATTAATTATTTATAATATTATCCTAAATAACAGTTGATTAAAGAACCGCAATATTCTTTTCATTTTTATTTAATTTTCAAAATATTTTCTAAATTAATAAAAATGATCTAGACTTTATTTATATATTATATATATCTAAAATTTTAATAATACTCTTAAAATTTTAAAATTCTTAAAAAAATACTCTTACCATTTTTATAAAACCATTAATATTTTATCACAACAATACTTTTGAACTTTTTAAAGATTTCAAAAACACTATTAAAAGGTTTTTAAAAAATATGTTTTAAAAAGCTCTAATTATAATTTTTAAAAATACTCTTTGAACTTTTTAAGGTTTACATCGTGTTAATGCTACTTTTAAAAGTTTATGAGTATTTTTTGAGTGCTAAAAACTTTTAAAGTAGAATATTTTTACTGACTGGTCATACAAAAACTAACGATAAAGATATTTTTAGACGTTTTTTTTTTAAATTTAAGAGTATTTTTAAACCAAATACAAAATTTAGGGATATTTTTATTAATTTAACAACATTTTAAGATAAAGTGAGTTATTATGATTTCTTAAAAACTATACGAAGAATTTAGGTTAGTTGATTCAGTAGATCAATTAAAACTTTTCGATCTTTTTAACTAAATGTCGTTAAAAGATGAAAAACGAAAGATTTTTGTTCATATAATAAATGTTCAAGATCTTTATCTTCAAAATCATTCTTATTTGAATGCGATTCTAGTTTATTCATGTACCTCTCATCTATTTAAGTGTCACAAAAATATTACTCTTATTAGTCCCGCAATTAAGAGGGTGAAAAATGGAAGCACCTACCTTTAAGACGGTAACGAGTGCCCAAAGTCTTCAAATTTGGAATATTCCCCTATTTGAGCATAGTTACTTTAAGGAGTAACAATATAAAAGGTGAAAAAAATTTAATTTACAAAGGGAAATGACAATGACGGATGATGGGCTTAGTCTTTTAGGGCCAAGCACAAAAGGACGGAGCCTTTTTTTCTCTCTACCAAACAGATCTCATTTCCCTCGAAAAATTACCGTTCACCAGATTTCATCGATATTTTGCTCTCTTGTGGCTCTAGAAATCTGCTCTGCCAGGTACGCCAGATGCTCCAAATACTCTTTTCATTCTTTTACTATTCCGAAGTGCGCGAATTGAGTGATGAACAATGCAAGCATTTCCTCGTAATTATCCAAATGCTGTAAAACCCTAACTGCTTTATCCATTAATTGTTGACCTATTGATGTTGCCACATTTTATCGATATTGATCTTCACTGTTTATCGATCGATTGTTTGTACTTTGATTGTCGTGTTGGTCGATTGATTTTTTTGTTCTTTCTTTTGAGTTTTGGGGCACTTTTTAGGGAAAGCAATCAACAGAGATAATAAGGCATTTCAAAATTAGGCACTTAAAATTTGCGACATTTGCTTTGCTATTCCGACCTATGATTTAACTTGGTTGACTGTTCATTAATTCATTCCTTGGGTGAAGAAATTTTGATTCTAAAGGAAAATACCCCTTTAATGTAGACAGCATGAGAAGATAGTACCAATGTAACCGCTCAAGCTCACTGTTAGTAAATATTGTTTGCTTTAGTCCGTTACGTATCGCTGTCAGCCTCACGATTATAAAACACGTCTGTTAATAGATTTTCATACCCTTATAAGAAATGTCTTGTTACTCACTCCTATCGAGGTGGAATCTCAAAATTCACTCTCTTTGAGGGCCCAGCTTCCGCGCTGACATACTACTTGATATATCTAGCTCTAATATCATTTGTAACCGCTCAAGTCTGCTTCTAGCAGATATTGTTCGTTTTAGCTCGTTACATATCGTTGTCAGTCTCACGATTTTAAAACGCGTCTGTCAGAGAGAGGTTTCTACACCTTTATAAAAAAATGTTTCTTTCTTTTTAGTCGTGTTTTTTTTTTTCTTTTTTTCCTTTTTTTGTTTGTTATTATTCTTTTCCACCTAATACTGTGTTTGGCTAGAAGTCAAGTGGCTGTTTCTTGGAAACAAAGAAGAGGGTAGGAGCTGTAATGGCTTGTGTTGGAGTAATGGCAGTAGTAGGTAGCCTGAAAGCATTGGGACATAGTCGCCCTCTGATTACAGAGTCGAAGAAATGGAAACAATTTACTGTATTGAAAATGAAATTGGAATGGAATTGGGAGCAAATGTAAGGACTCCAAAGGCTATGTGACAATAATTGTAGACACCCACTTTATTACATCTTCAAATACTTTGTTTTAA

mRNA sequence

AATTCTCACCTTCTACTTTTTCCTCGTTCGATTCCAGTTTTCAATGGCGTTGAACTAATTCAATTCGTCTCTTACATTGTCTTCGTCGCGTTGCCGTTGACGGTCATTTCCAGATCCCGCCATGGAAGCCCGATGTGAGCATCGAAACGAGCTCCATGATCAGAGCGGCGGTGCGGCCGATCGGTTCGTTTCCGATGAATCTACTGCGGGACTACTGGTCGATGCTTCTGCGGTACCAATGGATTCCACTTTCCGCCATAAGTTTGTTCTATGCTCTGCGGTACCAATGGATGCTTCTGCGGTACTGCCTGGTGGTGAAGTGATCATACCTGTGACCTTAAAGGCCTGGCAGCTTGGGTTGGCTGATTCTGATATTAAGGCACTCCAAGGATGGGCCAAGCACAAAAGGACGGAGCCTTTTTTTCTCTCTACCAAACAGATCTCATTTCCCTCGAAAAATTACCGTTCACCAGATTTCATCGATATTTTGCTCTCTTGTGGCTCTAGAAATCTGCTCTGCCAGTCAAGTGGCTGTTTCTTGGAAACAAAGAAGAGGGTAGGAGCTGTAATGGCTTGTGTTGGAGTAATGGCAGTAGTAGGTAGCCTGAAAGCATTGGGACATAGTCGCCCTCTGATTACAGAGTCGAAGAAATGGAAACAATTTACTGTATTGAAAATGAAATTGGAATGGAATTGGGAGCAAATGTAAGGACTCCAAAGGCTATGTGACAATAATTGTAGACACCCACTTTATTACATCTTCAAATACTTTGTTTTAA

Coding sequence (CDS)

ATGGAAGCCCGATGTGAGCATCGAAACGAGCTCCATGATCAGAGCGGCGGTGCGGCCGATCGGTTCGTTTCCGATGAATCTACTGCGGGACTACTGGTCGATGCTTCTGCGGTACCAATGGATTCCACTTTCCGCCATAAGTTTGTTCTATGCTCTGCGGTACCAATGGATGCTTCTGCGGTACTGCCTGGTGGTGAAGTGATCATACCTGTGACCTTAAAGGCCTGGCAGCTTGGGTTGGCTGATTCTGATATTAAGGCACTCCAAGGATGGGCCAAGCACAAAAGGACGGAGCCTTTTTTTCTCTCTACCAAACAGATCTCATTTCCCTCGAAAAATTACCGTTCACCAGATTTCATCGATATTTTGCTCTCTTGTGGCTCTAGAAATCTGCTCTGCCAGTCAAGTGGCTGTTTCTTGGAAACAAAGAAGAGGGTAGGAGCTGTAATGGCTTGTGTTGGAGTAATGGCAGTAGTAGGTAGCCTGAAAGCATTGGGACATAGTCGCCCTCTGATTACAGAGTCGAAGAAATGGAAACAATTTACTGTATTGAAAATGAAATTGGAATGGAATTGGGAGCAAATGTAA

Protein sequence

MEARCEHRNELHDQSGGAADRFVSDESTAGLLVDASAVPMDSTFRHKFVLCSAVPMDASAVLPGGEVIIPVTLKAWQLGLADSDIKALQGWAKHKRTEPFFLSTKQISFPSKNYRSPDFIDILLSCGSRNLLCQSSGCFLETKKRVGAVMACVGVMAVVGSLKALGHSRPLITESKKWKQFTVLKMKLEWNWEQM

Homology

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BLAST of CmaCh01G014830 vs. NCBI nr
Match: KAG6608137.1 (hypothetical protein SDJN03_01479, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 4.0e-11
Identity = 51/94 (54.26%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 1  MEARCEHRNELHDQSGGAADRFVSDESTA---GLLVDASAVPMDSTFRHKFVLCSAVPMD 60
          MEARCEHRNELHDQSGGAADRFVSDESTA    +L+    +P+        V  SAVPMD
Sbjct: 1  MEARCEHRNELHDQSGGAADRFVSDESTADYWSMLLRYQGIPL---LAISLVYASAVPMD 60

Query: 61 ASAVLPGGEVIIPVTLKAWQLGLADSDIKALQGW 92
          ASA+L  G           Q   A S +KALQ W
Sbjct: 61 ASALLRRG---------YHQSFAARSCLKALQRW 82

The following BLAST results are available for this feature:

BLAST of CmaCh01G014830 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh01G014830 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh01G014830 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608137.1	4.0e-11	54.26	hypothetical protein SDJN03_01479, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh01G014830 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G014830.1	CmaCh01G014830.1	mRNA