Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTCGATGAATTTTACCGGCAACCGGCTGCCGTTCCTTTCAAATGGGAGATCAAACCTGGCGTCCCCAGGAACCACCACTGCCTCCACCCTTTCCCCACTCACTCTCCGCAACAACACAAGAAGCTAAAGCCTCCTCCGGCTGTAACTGCAACCCAATTCCACCGTTCTTCCAACTCCCTCCGAACCCGGTCCGACCGATGGTCTTCCTCCCAGTCCAAACTTGCCGAACCCGAGCAGGTCTCGGTCGGTTGCTTCTCCTCGCCTTTGCCGAACCGGAAAGCGACCAAGATTTTGAACAGGAAACCCGAACCGGATTGTGCCTCTGAATTGGAGACTTTGCCGCGGTGGTCTCTTTCCAGTAAGAAGTCGATTTCGCCGTTCAGAAATTCGGTTTCGTCGTCGCCGTCGCCGTCGTCGCTTTCGTCGTACCAGTCATCACCCCGTCCGACTAGTGATTCTGAGTGGGCCGGATTTGGGCTCTTTTGA
mRNA sequence
ATGGATGTCGATGAATTTTACCGGCAACCGGCTGCCGTTCCTTTCAAATGGGAGATCAAACCTGGCGTCCCCAGGAACCACCACTGCCTCCACCCTTTCCCCACTCACTCTCCGCAACAACACAAGAAGCTAAAGCCTCCTCCGGCTGTAACTGCAACCCAATTCCACCGTTCTTCCAACTCCCTCCGAACCCGGTCCGACCGATGGTCTTCCTCCCAGTCCAAACTTGCCGAACCCGAGCAGGTCTCGGTCGGTTGCTTCTCCTCGCCTTTGCCGAACCGGAAAGCGACCAAGATTTTGAACAGGAAACCCGAACCGGATTGTGCCTCTGAATTGGAGACTTTGCCGCGGTGGTCTCTTTCCAGTAAGAAGTCGATTTCGCCGTTCAGAAATTCGGTTTCGTCGTCGCCGTCGCCGTCGTCGCTTTCGTCGTACCAGTCATCACCCCGTCCGACTAGTGATTCTGAGTGGGCCGGATTTGGGCTCTTTTGA
Coding sequence (CDS)
ATGGATGTCGATGAATTTTACCGGCAACCGGCTGCCGTTCCTTTCAAATGGGAGATCAAACCTGGCGTCCCCAGGAACCACCACTGCCTCCACCCTTTCCCCACTCACTCTCCGCAACAACACAAGAAGCTAAAGCCTCCTCCGGCTGTAACTGCAACCCAATTCCACCGTTCTTCCAACTCCCTCCGAACCCGGTCCGACCGATGGTCTTCCTCCCAGTCCAAACTTGCCGAACCCGAGCAGGTCTCGGTCGGTTGCTTCTCCTCGCCTTTGCCGAACCGGAAAGCGACCAAGATTTTGAACAGGAAACCCGAACCGGATTGTGCCTCTGAATTGGAGACTTTGCCGCGGTGGTCTCTTTCCAGTAAGAAGTCGATTTCGCCGTTCAGAAATTCGGTTTCGTCGTCGCCGTCGCCGTCGTCGCTTTCGTCGTACCAGTCATCACCCCGTCCGACTAGTGATTCTGAGTGGGCCGGATTTGGGCTCTTTTGA
Protein sequence
MDVDEFYRQPAAVPFKWEIKPGVPRNHHCLHPFPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRWSSSQSKLAEPEQVSVGCFSSPLPNRKATKILNRKPEPDCASELETLPRWSLSSKKSISPFRNSVSSSPSPSSLSSYQSSPRPTSDSEWAGFGLF
Homology
BLAST of CmaCh01G013750 vs. ExPASy TrEMBL
Match:
A0A6J1ISY3 (uncharacterized protein LOC111480325 OS=Cucurbita maxima OX=3661 GN=LOC111480325 PE=4 SV=1)
HSP 1 Score: 330.1 bits (845), Expect = 5.2e-87
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
Query: 1 MDVDEFYRQPAAVPFKWEIKPGVPRNHHCLHPFPTHSPQQHKKLKPPPAVTATQFHRSSN 60
MDVDEFYRQPAAVPFKWEIKPGVPRNHHCLHPFPTHSPQQHKKLKPPPAVTATQFHRSSN
Sbjct: 1 MDVDEFYRQPAAVPFKWEIKPGVPRNHHCLHPFPTHSPQQHKKLKPPPAVTATQFHRSSN 60
Query: 61 SLRTRSDRWSSSQSKLAEPEQVSVGCFSSPLPNRKATKILNRKPEPDCASELETLPRWSL 120
SLRTRSDRWSSSQSKLAEPEQVSVGCFSSPLPNRKATKILNRKPEPDCASELETLPRWSL
Sbjct: 61 SLRTRSDRWSSSQSKLAEPEQVSVGCFSSPLPNRKATKILNRKPEPDCASELETLPRWSL 120
Query: 121 SSKKSISPFRNSVSSSPSPSSLSSYQSSPRPTSDSEWAGFGLF 164
SSKKSISPFRNSVSSSPSPSSLSSYQSSPRPTSDSEWAGFGLF
Sbjct: 121 SSKKSISPFRNSVSSSPSPSSLSSYQSSPRPTSDSEWAGFGLF 163
BLAST of CmaCh01G013750 vs. ExPASy TrEMBL
Match:
A0A6J1FHC7 (uncharacterized protein LOC111445775 OS=Cucurbita moschata OX=3662 GN=LOC111445775 PE=4 SV=1)
HSP 1 Score: 300.8 bits (769), Expect = 3.4e-78
Identity = 152/163 (93.25%), Postives = 156/163 (95.71%), Query Frame = 0
Query: 1 MDVDEFYRQPAAVPFKWEIKPGVPRNHHCLHPFPTHSPQQHKKLKPPPAVTATQFHRSSN 60
MDVDEFYRQPAAVPFKWEIKPGVPRNHH LH FPTHSPQQHKKLKPPPAVTATQFHRSSN
Sbjct: 1 MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKPPPAVTATQFHRSSN 60
Query: 61 SLRTRSDRWSSSQSKLAEPEQVSVGCFSSPLPNRKATKILNRKPEPDCASELETLPRWSL 120
SLRTRSDRWSS+QSKLAEPEQVSVGCFSSPLPNRKA+KI+NRKPEPD ASELETLPRWS+
Sbjct: 61 SLRTRSDRWSSTQSKLAEPEQVSVGCFSSPLPNRKASKIVNRKPEPDYASELETLPRWSV 120
Query: 121 SSKKSISPFRNSVSSSPSPSSLSSYQSSPRPTSDSEWAGFGLF 164
SSKKSISPFRNSVSS SSLSSYQSSPRPTSDSEWAGFGLF
Sbjct: 121 SSKKSISPFRNSVSS----SSLSSYQSSPRPTSDSEWAGFGLF 159
BLAST of CmaCh01G013750 vs. ExPASy TrEMBL
Match:
A0A1S3BAM4 (uncharacterized protein LOC103487607 OS=Cucumis melo OX=3656 GN=LOC103487607 PE=4 SV=1)
HSP 1 Score: 207.6 bits (527), Expect = 3.9e-50
Identity = 120/171 (70.18%), Postives = 132/171 (77.19%), Query Frame = 0
Query: 1 MDVDEFYRQPAAVPFKWEIKPGVPRNHHCLHPFPTHSPQQH--KKLKPPPAVTATQFHRS 60
MD DEFYR+PAAVPFKWEIKPGVPRNHH PTHSP QH +KLKPPPAV + F
Sbjct: 1 MDTDEFYRKPAAVPFKWEIKPGVPRNHHRPRQSPTHSPPQHHRQKLKPPPAV--SHFPHP 60
Query: 61 SNSL----RTRSDRWSSSQSKLAEPEQV-SVGCFSSPLPNRKATKILNRK-PEPDCASEL 120
SNSL RTRSDRW + EQV S GCF SPLPNRK+ K L+RK PEPD +S+L
Sbjct: 61 SNSLHSSPRTRSDRW-----RFVRSEQVSSSGCFPSPLPNRKSPKALSRKFPEPDYSSDL 120
Query: 121 ETLPRWSLSSKKSISPFRNSVSSSPSPSSLSSYQSSPRPTSDSEWAGFGLF 164
+TL RWS+SS+KSISPFR SVSSS SPSS SSYQSSPRPTSD+EWAGFGLF
Sbjct: 121 DTLSRWSVSSRKSISPFRYSVSSS-SPSSFSSYQSSPRPTSDTEWAGFGLF 163
BLAST of CmaCh01G013750 vs. ExPASy TrEMBL
Match:
A0A6J1BQH3 (uncharacterized protein DKFZp434B061-like OS=Momordica charantia OX=3673 GN=LOC111004696 PE=4 SV=1)
HSP 1 Score: 206.8 bits (525), Expect = 6.7e-50
Identity = 117/173 (67.63%), Postives = 131/173 (75.72%), Query Frame = 0
Query: 1 MDVDEFYRQPAAVPFKWEIKPGVPRNHHCLHPFPTHSPQQHKKLKPPPAVTATQFHRSS- 60
MD DEFYR+PAAVPFKWEIKPGVPR HH L P P+ PQ KLKPPP V + F R S
Sbjct: 1 MDADEFYRRPAAVPFKWEIKPGVPRAHHRLCPSPSPPPQ---KLKPPPVV--SHFRRPSE 60
Query: 61 -------NSLRTRSDRWSSSQSKLAEPEQVS--VGCFSSPLPNRKATKILNRKPEPDCAS 120
+S RTRSDRW ++S LAEP QVS GCF SP PNRK+ K +NRKPEP+ +
Sbjct: 61 SSSCSLHSSSRTRSDRWRFARSSLAEPPQVSPATGCFPSPSPNRKSGKSMNRKPEPNYTT 120
Query: 121 ELETLPRWSLSSKKSISPFRNSVSSSPSPSSLSSYQSSPRPTSDSEWAGFGLF 164
ELETL RWS+SS+KSISPFR+SVSS SPSS SSYQSSPRPTSD+EWAGFGLF
Sbjct: 121 ELETLSRWSVSSRKSISPFRDSVSS--SPSSFSSYQSSPRPTSDTEWAGFGLF 166
BLAST of CmaCh01G013750 vs. ExPASy TrEMBL
Match:
A0A7J7DRX3 (B-like cyclin OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G01012 PE=3 SV=1)
HSP 1 Score: 141.0 bits (354), Expect = 4.5e-30
Identity = 92/188 (48.94%), Postives = 109/188 (57.98%), Query Frame = 0
Query: 2 DVDEFYRQPAAVPFKWEIKPGVPR---NHHCLHPFPT------------HS-PQQHKKLK 61
D D ++P AVPFKWEI+PGVP+ +HH P P HS P +KLK
Sbjct: 355 DEDYSCKKPGAVPFKWEIRPGVPKIQHDHHKPQPPPLSPPASPFLDENHHSLPTTPRKLK 414
Query: 62 PPPAVTA------TQFHRSSNSLRTRSDRWSSSQSKLAEPEQVSVGCFSSPLPNRKATKI 121
PPPAV + + ++ RTRS+ W Q P+ VS GCF SPL RK K
Sbjct: 415 PPPAVFSFLPQPELRTRSFLSTPRTRSNHWRFEQPVPLRPDAVSPGCFPSPLLRRKENKR 474
Query: 122 LNRKP----EPDCASELETLPRWSLSSKKSISPFRNSVSSSPSPSSLSSYQSSPRPTSDS 164
RKP EPDC SELETL RWS+SS+K+ SPFR+S SS S YQSSPRP SD+
Sbjct: 475 RVRKPDPAYEPDCNSELETLSRWSVSSRKTFSPFRDST------SSYSPYQSSPRPVSDT 534
BLAST of CmaCh01G013750 vs. NCBI nr
Match:
XP_022981067.1 (uncharacterized protein LOC111480325 [Cucurbita maxima])
HSP 1 Score: 330.1 bits (845), Expect = 1.1e-86
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
Query: 1 MDVDEFYRQPAAVPFKWEIKPGVPRNHHCLHPFPTHSPQQHKKLKPPPAVTATQFHRSSN 60
MDVDEFYRQPAAVPFKWEIKPGVPRNHHCLHPFPTHSPQQHKKLKPPPAVTATQFHRSSN
Sbjct: 1 MDVDEFYRQPAAVPFKWEIKPGVPRNHHCLHPFPTHSPQQHKKLKPPPAVTATQFHRSSN 60
Query: 61 SLRTRSDRWSSSQSKLAEPEQVSVGCFSSPLPNRKATKILNRKPEPDCASELETLPRWSL 120
SLRTRSDRWSSSQSKLAEPEQVSVGCFSSPLPNRKATKILNRKPEPDCASELETLPRWSL
Sbjct: 61 SLRTRSDRWSSSQSKLAEPEQVSVGCFSSPLPNRKATKILNRKPEPDCASELETLPRWSL 120
Query: 121 SSKKSISPFRNSVSSSPSPSSLSSYQSSPRPTSDSEWAGFGLF 164
SSKKSISPFRNSVSSSPSPSSLSSYQSSPRPTSDSEWAGFGLF
Sbjct: 121 SSKKSISPFRNSVSSSPSPSSLSSYQSSPRPTSDSEWAGFGLF 163
BLAST of CmaCh01G013750 vs. NCBI nr
Match:
KAG6608039.1 (hypothetical protein SDJN03_01381, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031666.1 hypothetical protein SDJN02_05707, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 312.4 bits (799), Expect = 2.3e-81
Identity = 157/163 (96.32%), Postives = 160/163 (98.16%), Query Frame = 0
Query: 1 MDVDEFYRQPAAVPFKWEIKPGVPRNHHCLHPFPTHSPQQHKKLKPPPAVTATQFHRSSN 60
MDVDEFYRQPAAVPFKWEIKPGVPRNHH LHPFPTHSPQQHKKLKPPPAVTATQFHRSSN
Sbjct: 1 MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHPFPTHSPQQHKKLKPPPAVTATQFHRSSN 60
Query: 61 SLRTRSDRWSSSQSKLAEPEQVSVGCFSSPLPNRKATKILNRKPEPDCASELETLPRWSL 120
SLRTRSDRW SSQSKLAEPEQVSVGCFSSPLPNRKA+KI+NRKPEPDCASELETLPRWS+
Sbjct: 61 SLRTRSDRWVSSQSKLAEPEQVSVGCFSSPLPNRKASKIVNRKPEPDCASELETLPRWSV 120
Query: 121 SSKKSISPFRNSVSSSPSPSSLSSYQSSPRPTSDSEWAGFGLF 164
SSKKSISPFRNSVSSSPS SSLSSYQSSPRPTSDSEWAGFGLF
Sbjct: 121 SSKKSISPFRNSVSSSPS-SSLSSYQSSPRPTSDSEWAGFGLF 162
BLAST of CmaCh01G013750 vs. NCBI nr
Match:
XP_023525665.1 (uncharacterized protein LOC111789202 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 305.1 bits (780), Expect = 3.7e-79
Identity = 154/163 (94.48%), Postives = 158/163 (96.93%), Query Frame = 0
Query: 1 MDVDEFYRQPAAVPFKWEIKPGVPRNHHCLHPFPTHSPQQHKKLKPPPAVTATQFHRSSN 60
MDVDEFYRQPAAVPFKWEIKPGVPRNHH LHPFPTHSPQQHKKLKPPPAVTATQFHRSSN
Sbjct: 1 MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHPFPTHSPQQHKKLKPPPAVTATQFHRSSN 60
Query: 61 SLRTRSDRWSSSQSKLAEPEQVSVGCFSSPLPNRKATKILNRKPEPDCASELETLPRWSL 120
SLRTRSDRWSS+QSKLA+PEQV VGCFSSPLPNRKATKI+NRKPEPD ASELETLPRWS+
Sbjct: 61 SLRTRSDRWSSTQSKLAQPEQVLVGCFSSPLPNRKATKIVNRKPEPDYASELETLPRWSV 120
Query: 121 SSKKSISPFRNSVSSSPSPSSLSSYQSSPRPTSDSEWAGFGLF 164
SSKKSISPFRNSVSSSPS SS SSYQSSPRPTSDSEWAGFGLF
Sbjct: 121 SSKKSISPFRNSVSSSPS-SSRSSYQSSPRPTSDSEWAGFGLF 162
BLAST of CmaCh01G013750 vs. NCBI nr
Match:
XP_022940016.1 (uncharacterized protein LOC111445775 [Cucurbita moschata])
HSP 1 Score: 300.8 bits (769), Expect = 7.0e-78
Identity = 152/163 (93.25%), Postives = 156/163 (95.71%), Query Frame = 0
Query: 1 MDVDEFYRQPAAVPFKWEIKPGVPRNHHCLHPFPTHSPQQHKKLKPPPAVTATQFHRSSN 60
MDVDEFYRQPAAVPFKWEIKPGVPRNHH LH FPTHSPQQHKKLKPPPAVTATQFHRSSN
Sbjct: 1 MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKPPPAVTATQFHRSSN 60
Query: 61 SLRTRSDRWSSSQSKLAEPEQVSVGCFSSPLPNRKATKILNRKPEPDCASELETLPRWSL 120
SLRTRSDRWSS+QSKLAEPEQVSVGCFSSPLPNRKA+KI+NRKPEPD ASELETLPRWS+
Sbjct: 61 SLRTRSDRWSSTQSKLAEPEQVSVGCFSSPLPNRKASKIVNRKPEPDYASELETLPRWSV 120
Query: 121 SSKKSISPFRNSVSSSPSPSSLSSYQSSPRPTSDSEWAGFGLF 164
SSKKSISPFRNSVSS SSLSSYQSSPRPTSDSEWAGFGLF
Sbjct: 121 SSKKSISPFRNSVSS----SSLSSYQSSPRPTSDSEWAGFGLF 159
BLAST of CmaCh01G013750 vs. NCBI nr
Match:
XP_038899347.1 (uncharacterized protein LOC120086669 [Benincasa hispida])
HSP 1 Score: 216.1 bits (549), Expect = 2.3e-52
Identity = 121/168 (72.02%), Postives = 132/168 (78.57%), Query Frame = 0
Query: 1 MDVDEFYRQPAAVPFKWEIKPGVPRNHHCLHPFPTHS-PQQHKKLKPPPAVTATQFHRSS 60
MDVDEFYRQPAAVPFKWEIKPGVP+NHH L PTHS PQ H+KLKPPP+V + F S
Sbjct: 1 MDVDEFYRQPAAVPFKWEIKPGVPKNHHRLRHSPTHSPPQHHQKLKPPPSV--SNFLHPS 60
Query: 61 NSL----RTRSDRWSSSQSKLAEPEQVSVGCFSSPLPNRKATKILNRKPEPDCASELETL 120
NSL RTRSDRW SQ PEQVS GCF SPLPNRK+ K L+R PEPD +S LE+L
Sbjct: 61 NSLHSSSRTRSDRWRFSQ-----PEQVSSGCFPSPLPNRKSAKSLSRNPEPDYSSGLESL 120
Query: 121 PRWSLSSKKSISPFRNSVSSSPSPSSLSSYQSSPRPTSDSEWAGFGLF 164
RWS+SS+KSISPFR SVSS SPSS SSY SSPRPTSD+EWAGFGLF
Sbjct: 121 SRWSVSSRKSISPFRYSVSS--SPSSYSSYHSSPRPTSDTEWAGFGLF 159
BLAST of CmaCh01G013750 vs. TAIR 10
Match:
AT1G77400.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G21695.1); Has 328 Blast hits to 314 proteins in 61 species: Archae - 0; Bacteria - 12; Metazoa - 130; Fungi - 28; Plants - 92; Viruses - 10; Other Eukaryotes - 56 (source: NCBI BLink). )
HSP 1 Score: 61.2 bits (147), Expect = 8.7e-10
Identity = 63/235 (26.81%), Postives = 88/235 (37.45%), Query Frame = 0
Query: 1 MDVDEFYRQPAAVPFKWEIKPGVPRNHHCLHPFPTHSPQQHKKLKP-------------P 60
+DVD+ +++P +PF WEI+PGVP+ P T Q KKL P P
Sbjct: 4 IDVDDSFKRPGTIPFSWEIRPGVPKT-RMSQPGNTTPLQPPKKLSPLRFKPLSHSQPLLP 63
Query: 61 PAVTATQFHRSSNSL------------------------------------------RTR 120
PA++ SNS R
Sbjct: 64 PALSPPSSSFISNSKSRPLSPLTPHSFSTTPSKLKPPRTPSSLSGFYSPGPSFRSSPRAF 123
Query: 121 SDRWSSSQSKLAEPEQ----------VSVGCFSSP-------LPNRKATKILNRKPEPDC 164
S+RW + PE GCF SP K +R
Sbjct: 124 SERWQLHRPNRIRPESEPEPSSDFSVAGFGCFPSPKFRLRKVKSGGSRRKSGSRSENDYY 183
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1ISY3 | 5.2e-87 | 100.00 | uncharacterized protein LOC111480325 OS=Cucurbita maxima OX=3661 GN=LOC111480325... | [more] |
A0A6J1FHC7 | 3.4e-78 | 93.25 | uncharacterized protein LOC111445775 OS=Cucurbita moschata OX=3662 GN=LOC1114457... | [more] |
A0A1S3BAM4 | 3.9e-50 | 70.18 | uncharacterized protein LOC103487607 OS=Cucumis melo OX=3656 GN=LOC103487607 PE=... | [more] |
A0A6J1BQH3 | 6.7e-50 | 67.63 | uncharacterized protein DKFZp434B061-like OS=Momordica charantia OX=3673 GN=LOC1... | [more] |
A0A7J7DRX3 | 4.5e-30 | 48.94 | B-like cyclin OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G01012 PE=3 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
XP_022981067.1 | 1.1e-86 | 100.00 | uncharacterized protein LOC111480325 [Cucurbita maxima] | [more] |
KAG6608039.1 | 2.3e-81 | 96.32 | hypothetical protein SDJN03_01381, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023525665.1 | 3.7e-79 | 94.48 | uncharacterized protein LOC111789202 [Cucurbita pepo subsp. pepo] | [more] |
XP_022940016.1 | 7.0e-78 | 93.25 | uncharacterized protein LOC111445775 [Cucurbita moschata] | [more] |
XP_038899347.1 | 2.3e-52 | 72.02 | uncharacterized protein LOC120086669 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
AT1G77400.1 | 8.7e-10 | 26.81 | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR0077... | [more] |