CmaCh01G013670 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G013670
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr01: 9730554 .. 9733849 (+)
RNA-Seq ExpressionCmaCh01G013670
SyntenyCmaCh01G013670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCGCAGGCATATATCATGGTTTTAGTGAAACACAAACCGAGTCTCAGGTGTGTGCATGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCATTTATACCTCTATTGCAATTATGTGTGATGAATGTTTGAAAATTGTATCCCTTTCCGTCGACAAGATTTTGGAAGAACTGAATACATTACAACTCATAAGATTTTAGCATTATCATTGAAGTTGAAATTGATACTAGGAACAAACTAATTACTTGGCTATTAGTTCCACCCTGTTAACAGTTCAATGTTTGTAGGTTGTGGGTATTGAAGAGGATTTGTCGGGAATGCAAATGCTTATAGACAGAGTTAAAAGATGGTGGCAGGACTAGGAGCCGCACTGTGAAGGTTTGATTAGAGCTTGATATAAGATTTAAATATGCGAAGACATAAAATACGCGTGTTAGTATGCTTGAGAATTAAATGTCAAGAAAATTAGTCATCAAGAAAGTAATGTGCGTTTAATTAATTTAATAAGATTTAAATATGGTTTAATTAATTTAATAAGACGCAATGTGCGTTTAAAAATTAGTCATCAAGAAAGTAAACAAAATTAGAGGAAAAACTGCCTCCAAAAATATCTTGGGCAAAAAAGTCCTGTATTGTTTTGATGATTAAAGAAAATACATATTTTCTAGATTTTGTTTTCAGAAATCAAGGTATATTCATTTTTGGGTTTTAAAAAAAATAAAAAAGTTTCTTAAAATATAGTTTCATGAACTCGGTAGATTACATGAATTCATCATGTTACATACATAGTGTGTATATATGCATTGTATGTGCTATTTATTTATTTATGTTGGGGAGAATTTGAACCTCTATTCTTTGAATTAAGAGTATAAAGTTTTAATTTATTGAGTTATGTATATGTTTAATTTGTATATATGCATTTAACAAATAACAAAAAACTATTCACTCTTTGAGTACGAAATATAATATTGAAAACACTATTAAATATTGGTCCTTCGGACGACTTACACAACATACAACAATATATGGAGAAACAACAGAAAATTACAAAAGCAAACACCCAACCCCAAAGGGAGAGTGGTTCTCGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGAATGGGGTGTAGAAAGAAACCGTTGCATTATTCAAATATTGTCACTACTACATGAAAACCCTTGAATGAAAGGCCATCAAGAGAGTGAAGTCCAACAGTCCTTAGATTCATGTCTCTCGCATTGCCCTGACAGCTTGAAACCTTGGTTCCTTTGGAAGGAACTTCTGCTCAGCATAAATCGACATGTAGTCTCCAAACACAAACTTGGGATATCCTTCTTCCACCTCCTGGTTTGCTTTATTCACCACCTGTGCTGCAGGACCTATGATGGCTTCCATTGAAGGGTTGTAAAACGAAGCAAGTGATCTCCTATTCCCATTTGGTGAGGGCAGAACCCGGTGCCAAACACTCTTGTATCTTCCATTGCTCAGGACCTCAATCTGATCACCTGTGTTGATGACTATGGAGTTCTGCAATGGCTGGACATCTATCCACTGCCCATCTTTCAGGATTTGAAGGCCTCCCACCTCGTCGTCTTGGAAGAGTAAGATAACACCACCAGCATCGGTGTGCGCACGGAGGCCGTTCACCAACTCCGGGTGTGGGCATGGTGGGTAGTGACTGACTTTGGTTCCAAAGAAGGCCTTGTCCAGCCCACCGCCACCATTGAAGGCAGCCTGTATGTATCCCTCAGGTAAACCCAAGTTCTCATCCATCACTGCCATCACTTTTGCAGCTAGCTTCTTCAGCTCCGATCTATACTCTGCCATGGTTTCCCTGCCACAATATCCGTGAGTTGCTTTCAAAACCTACTCTCTGTCTGTAAGAAAATTTGATTGCATGATTTAAGTGTAGGTGCATGCTTACTTGAATCCAGGAATGTTGGAGGGCCATTCGTTGTTATCATGGAGAAGGAAGACATCTTCCCAATCAAGACTTTCCAGCTTCTCGCCGCTCTTGCGTTCCAGCAAATCATTCAGGAGCTTCACAGGTTTTGAACTCTTGAAATTCTCTTCTCTTTCCAGCTTGTAGCACTCTGAACAAACCTTCTTCACCCTCTCTAGGAGCTCTTCTGGAATCCCATGGTTCACCAGCTGAAATTCAGGTAACATATATTTTAGTCCACAATATTATACAACATAACATTTAATGAGTGCTCATGTTCATGCTTTGGACACTACTTTAAAAACTTTAAAAACATAGAATCAGCGCTCCTTGCATTCAAACATTGACCAACCTAAGTATAACTCACTCGGTTAA

mRNA sequence

ATGGGAGCGCAGGCATATATCATGGTTTTAGTGAAACACAAACCGAGTCTCAGTTCAATGTTTACAGAGTTAAAAGATGGTGGCAGGACTAGGAGCCGCACTGTGAAGATTTTGTTTTCAGAAATCAAGGGTTGTAAAACGAAGCAAGTGATCTCCTATTCCCATTTGGTGAGGGCAGAACCCGGATTTGAAGGCCTCCCACCTCGTCGTCTTGGAAGAAAGGCCTTGTCCAGCCCACCGCCACCATTGAAGGCAGCCTGTATGTATCCCTCAGGTAAACCCAAGTTCTCATCCATCACTGCCATCACTTTTGCAGCTAGCTTCTTCAGCTCCGATCTATACTCTGCCATGGTTTCCCTGCCACAATATCCGAATGTTGGAGGGCCATTCGTTGTTATCATGGAGAAGGAAGACATCTTCCCAATCAAGACTTTCCAGCTTCTCGCCGCTCTTGCCACTCTGAACAAACCTTCTTCACCCTCTCTAGGAGCTCTTCTGGAATCCCATGGTTCACCAGCTGAAATTCAGAATCAGCGCTCCTTGCATTCAAACATTGACCAACCTAAGTATAACTCACTCGGTTAA

Coding sequence (CDS)

ATGGGAGCGCAGGCATATATCATGGTTTTAGTGAAACACAAACCGAGTCTCAGTTCAATGTTTACAGAGTTAAAAGATGGTGGCAGGACTAGGAGCCGCACTGTGAAGATTTTGTTTTCAGAAATCAAGGGTTGTAAAACGAAGCAAGTGATCTCCTATTCCCATTTGGTGAGGGCAGAACCCGGATTTGAAGGCCTCCCACCTCGTCGTCTTGGAAGAAAGGCCTTGTCCAGCCCACCGCCACCATTGAAGGCAGCCTGTATGTATCCCTCAGGTAAACCCAAGTTCTCATCCATCACTGCCATCACTTTTGCAGCTAGCTTCTTCAGCTCCGATCTATACTCTGCCATGGTTTCCCTGCCACAATATCCGAATGTTGGAGGGCCATTCGTTGTTATCATGGAGAAGGAAGACATCTTCCCAATCAAGACTTTCCAGCTTCTCGCCGCTCTTGCCACTCTGAACAAACCTTCTTCACCCTCTCTAGGAGCTCTTCTGGAATCCCATGGTTCACCAGCTGAAATTCAGAATCAGCGCTCCTTGCATTCAAACATTGACCAACCTAAGTATAACTCACTCGGTTAA

Protein sequence

MGAQAYIMVLVKHKPSLSSMFTELKDGGRTRSRTVKILFSEIKGCKTKQVISYSHLVRAEPGFEGLPPRRLGRKALSSPPPPLKAACMYPSGKPKFSSITAITFAASFFSSDLYSAMVSLPQYPNVGGPFVVIMEKEDIFPIKTFQLLAALATLNKPSSPSLGALLESHGSPAEIQNQRSLHSNIDQPKYNSLG
Homology
[Close]
BLAST of CmaCh01G013670 vs. NCBI nr
Match: KAG7031658.1 (hypothetical protein SDJN02_05699, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.8 bits (133), Expect = 4.7e-04
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 125 NVGGPFVVIMEKEDIFPIKTFQLLAALA 153
           NVGGPFVVIMEKEDIFPIK FQLLAALA
Sbjct: 126 NVGGPFVVIMEKEDIFPIKIFQLLAALA 153

The following BLAST results are available for this feature:
BLAST of CmaCh01G013670 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh01G013670 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh01G013670 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031658.14.7e-0496.43hypothetical protein SDJN02_05699, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh01G013670 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G013670.1CmaCh01G013670.1mRNA