CmaCh01G013490 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G013490
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr01: 9636393 .. 9639806 (-)
RNA-Seq ExpressionCmaCh01G013490
SyntenyCmaCh01G013490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTTTTGTTTGTGGTTAGCATCTCATTAAAGAGCGTTGCTGAGTTTTTCACGGCCATAAAGAATAAACCTGCCTTGGATGCTGTTGCTCTTTTGAGCTTCAACTGGTTCATACTTGGAATACATGCTTACCCGATGCTGCCAAATATTGCTCGTTTGCTTGTTCCTCTGACCTCGAGGTTTGTTGGACAAATAGTGGAATGGTTTGGTTTCTCCATTTTCTGATCCAATCTAAACTACTTCCTGCAACTCGAGAGGTACATCACCTAATCCCATTAGACAATGGATCATAAAACTTTATCTTCTAGTCGTGAATTTTCCATGTAGCATGCGATACATAGGGGTTTAAAAGTTGTTTATTCATCTTTACCATGATCTCAATGTGAATTCTCAATATTGTTTATAACTTATACATGGGTTAGACTATCTACTTTAATGTAACTTATTTGTTTGTTCACTTCTGTGACTATGAGTGATCCGTTCTCACGTCTTTCCAAGCTTTATGCAATTGATTAAGTTTCTATATAGAAAGCCCACAATTATGAGTCATCACATTTGGGGACTTTTATGATGTATTGGACTCTATCATTGGATCAAGCCGTGGGTGCTGATGCTCGTCTTCACTACCATAATTTCTGCAGGTAAAGCAAACAAACTAGTTGGATATGTATTGAGTATTTATTTGACTTGTCTTCTAAATATTAGGAAGTTATTTACTATCTATACTTTAGTTGAATATTCAACCTATGCATATTATGTTGATGATTATTGAGAGAGAGAGTAGTCTCACGTGGGTTAATTAAGAGGAAGATCATGGGTTTATAAGTAAGGAATAGTATCTCCATTGATATGAGGCATTTTGGGAAAATCCAAAGCAAAACCATGAGAGTTTATGCTCAAAGTGGATAATATCCTACTATTGTGGAGGTTTGTGATTCCTAACATATTATACAAAAAAAAAAAAAAACATACAACTTGGATAATTATTGGATACGTATTGAATATTCTGAATAGTATTATACATACATTAAAAATAATACATTAATACATTTCGAGAGTAGGATAAATCTAAGTCATTTTTAGTTTTTTTTTCCAAAAAGGTTTAAGTCGTGTGTGCTTTTGCTGGCCTACATGGGTCGGGTCGGGTGGTTGTAGTTGACAACCATAGCTACCATATTATGAAGGCCTTTCTTCCAAAGAAATGAGTATAACCAAATCCTAATGGAACTTTAAATTATTGTTATAATTGTTTTGAATGGAAGGACAGATGTGTGGCTGGGGGCTGTTCATTGAATAAAGTCCACAGTTTTGTCTTAAGCTTTAGACTCAAAAGTGGATTCTTCTTGATTTAGGCCTGTGCTTTGATTCATTAAATGTTTGGTTTTGAATGCTTGGCTTGTATTTTGCCACATTACTTTGCCACTTATTGTCTTTATTCTTGTGATATTGGTTGGCCGACTTGTCGGTTAAAATGCTCTGGGGACCAGTTTTTGTTCTTTATTACTCTTTGCTAATAAGCACAATATGTGAGATAACTCCTTGTTACTCTAAATTATTGGTTGAGTTGAGAAGTGTCAGTAATCAGCTAGAAGTTTTTACTAGATGGTGATGCTTTGCTAGTTGAACTTGGTCGAAATATTAGTTCCTATTCGATAGGGTTAATTGTGTCATCTGGTTCTTGCACGGTACACCATATTGCATAATGTTTGAATTGGGTTTAGGCTAACGTGTTGTATCGTGGTCGGTCAAGGATAATACATGTTTCAAAGGAAAAAAATTATATGGTATTACTATTGAGTGTTTGCATAATGTTTGAACTGTGTTTAGGCTGACGTCTTGTGTTGTAGTCGATCGAGGATGTACATGTTACGAAGCGGAGAAATACTCTACGGTATCACTATGGAGTGTTTAAACGAGGTATCGTTGGCTTGGTTATTATTGTATATGGATTTGACTGAACTTTATAGATAAATTACTCACTCAACCATATTATTGAGAGATGGAAATCTTTTAATACTAGATTTGCATAATATTTACTATTTACCCATTTAAACAATGGCAAAAAGAAGGGCCTTGAATAAAATTAGTTGGTTGGGTTTACATGGGTGTATGTTAAAAATGGTTAGACGAACACGACTCTCCACAATGGTATGATTCCATTCAACACCTTCTCCCTCGAACAAACTATGCCTCTCCTTAATCGAGGCTCGTCTCCCTTTTCTTTTGAAGGCATATGTTTGACATTTGAGGATTCTATTGACCTAGTTAAATTTAGGGCATGACTTTGATACCATGTTACACGAACACGACTCTCCACAATGGTATGATATAAAGATTTCATGTTAATGGAGAGAGTATTCTTTGATTATAAATTCATGATCATTTCCTAAATCCGATGTGGAACTTTCCTTCAACAATTATAAATTTATAAACTAATTTTAAACTAAAATGATTAGAGAAATTTTAAAATCAAAAGTGTCATAGTTCATGTTGGGTTGGTAGGGCCAAGTGATTCGGGAGATTTGATTAAAGTTTATGGTCCCAAATTTCAAAGAGGGAGACTGAAAAGTCAATAGGTAAAACAAATGGGACAGAAATTGCTATGTGAATTGCTTGACAACGTCCATCACATATTATTGTATAGACCCTTTCAAAGTCGGTCATTTTTTTACTTCTTTTTCCAATTTTTCTTTACAAATATCTCTGACTATTGCATTCAAAGTTCATAAATATAATCTGAAAAAAAATGTATTATTTGTTGTTTTTAATTGATTTTTTGGGTGACAAGTTCAATCATAATTGTGTGTATGTTGCTTAGAATTTTCTTGCAGAAGTCTAATCACATTCATACAAATATTAGGTTTTTCGCGAACAGTTTGAACCTCTAATCCTGGATAAGTTAGTTTAGATATTAATAAGTTGTTATAAAATAGTTTTTCTAATGTTCTGTTCGTGACTATGATTTAGAATTTAGATTTTGTGTTCAATAGCTTCTATGTTCTTTTGTGGCATGACTATGTTACTTGATTCAAATTGTTTCTAAGGGCAGAAACTATTGAGTCGTTTTACATATGTTTTCCTCAGGAGGTCACTTAACATAAAATTGTTTCTAGCTTCATTACAATGGTTACATGAGTGAGTCGCATGAGAATAAGGTACACTTTATTGTGGTTCTTTTAAATTTATTTATAATTTTATATTTTTTAAGATCATTTTTATTTAAATATGATATGATTTCTTTATTGGGTGAGATGTAGGAAATTTTCGTGTTATTCTTATTTAAATCGCATTTACCCTTTGTTTAATACAAAAATGTCTCAAGATCTTGTAAGGTGGGAATATTTGTTTGTTTGATCTTATACATCACAAAAATTATATATTTATGAATTATTCTTTTTTATCAGACTATGA

mRNA sequence

ATGGCTCTTTTGTTTGTGGTTAGCATCTCATTAAAGAGCGTTGCTGAGTTTTTCACGGCCATAAAGAATAAACCTGCCTTGGATGCTGTTGCTCTTTTGAGCTTCAACTGGTTCATACTTGGAATACATGCTTACCCGATGCTGCCAAATATTGCTCGTTTGCTTGTTCCTCTGACCTCGAGACTATGA

Coding sequence (CDS)

ATGGCTCTTTTGTTTGTGGTTAGCATCTCATTAAAGAGCGTTGCTGAGTTTTTCACGGCCATAAAGAATAAACCTGCCTTGGATGCTGTTGCTCTTTTGAGCTTCAACTGGTTCATACTTGGAATACATGCTTACCCGATGCTGCCAAATATTGCTCGTTTGCTTGTTCCTCTGACCTCGAGACTATGA

Protein sequence

MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTSRL
Homology
[Close]
BLAST of CmaCh01G013490 vs. ExPASy TrEMBL
Match: A0A6J1FLE1 (uncharacterized protein LOC111446814 OS=Cucurbita moschata OX=3662 GN=LOC111446814 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.2e-21
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           MALLFVVSISLKSV EFFT IKNKPALDAVALLSFNWFILGI AYPMLPNIARLLVPLTS
Sbjct: 228 MALLFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFILGILAYPMLPNIARLLVPLTS 287

Query: 61  R 62
           R
Sbjct: 288 R 288

[Close]
BLAST of CmaCh01G013490 vs. ExPASy TrEMBL
Match: A0A5A7UFG8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00660 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-18
Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           +AL+FVVSISLKSV EFFT IKNKPALDAVALLSFNWF+LGI AYP LPNIAR L PL S
Sbjct: 145 VALMFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFVLGILAYPTLPNIARFLAPLAS 204

Query: 61  RL 63
           R+
Sbjct: 205 RV 206

[Close]
BLAST of CmaCh01G013490 vs. ExPASy TrEMBL
Match: A0A1S3B9G5 (uncharacterized protein LOC103487633 OS=Cucumis melo OX=3656 GN=LOC103487633 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-18
Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           +AL+FVVSISLKSV EFFT IKNKPALDAVALLSFNWF+LGI AYP LPNIAR L PL S
Sbjct: 227 VALMFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFVLGILAYPTLPNIARFLAPLAS 286

Query: 61  RL 63
           R+
Sbjct: 287 RV 288

[Close]
BLAST of CmaCh01G013490 vs. ExPASy TrEMBL
Match: A0A6J1IHW7 (uncharacterized protein LOC111477072 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477072 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.7e-18
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 0 

Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           +AL+FVVSISLKSV EFFT IKNKPALDAV+LLSFNWF+LGI AYP LPN+ARLL PL S
Sbjct: 256 VALMFVVSISLKSVVEFFTTIKNKPALDAVSLLSFNWFVLGILAYPTLPNMARLLAPLAS 315

Query: 61  RL 63
           R+
Sbjct: 316 RV 317

[Close]
BLAST of CmaCh01G013490 vs. ExPASy TrEMBL
Match: A0A6J1F6D4 (uncharacterized protein LOC111442593 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111442593 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.7e-18
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 0 

Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           +AL+FVVSISLKSV EFFT IKNKPALDAVALLSFNWF+LGI AYP LPN+AR+L PL S
Sbjct: 256 VALMFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFVLGILAYPTLPNMARVLAPLAS 315

Query: 61  RL 63
           R+
Sbjct: 316 RV 317

[Close]
BLAST of CmaCh01G013490 vs. NCBI nr
Match: KAG6608015.1 (hypothetical protein SDJN03_01357, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.2 bits (274), Expect = 6.7e-21
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           MALLFVVSISLKSV EFFT IKNKPALDAVALLSFNWFILGI AYPMLPNIARLLVPLTS
Sbjct: 293 MALLFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFILGILAYPMLPNIARLLVPLTS 352

Query: 61  R 62
           R
Sbjct: 353 R 353

[Close]
BLAST of CmaCh01G013490 vs. NCBI nr
Match: XP_022941541.1 (uncharacterized protein LOC111446814 [Cucurbita moschata])

HSP 1 Score: 110.2 bits (274), Expect = 6.7e-21
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           MALLFVVSISLKSV EFFT IKNKPALDAVALLSFNWFILGI AYPMLPNIARLLVPLTS
Sbjct: 228 MALLFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFILGILAYPMLPNIARLLVPLTS 287

Query: 61  R 62
           R
Sbjct: 288 R 288

[Close]
BLAST of CmaCh01G013490 vs. NCBI nr
Match: XP_023523435.1 (uncharacterized protein LOC111787648, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.2 bits (274), Expect = 6.7e-21
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           MALLFVVSISLKSV EFFT IKNKPALDAVALLSFNWFILGI AYPMLPNIARLLVPLTS
Sbjct: 147 MALLFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFILGILAYPMLPNIARLLVPLTS 206

Query: 61  R 62
           R
Sbjct: 207 R 207

[Close]
BLAST of CmaCh01G013490 vs. NCBI nr
Match: XP_008444253.1 (PREDICTED: uncharacterized protein LOC103487633 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 6.9e-18
Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           +AL+FVVSISLKSV EFFT IKNKPALDAVALLSFNWF+LGI AYP LPNIAR L PL S
Sbjct: 227 VALMFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFVLGILAYPTLPNIARFLAPLAS 286

Query: 61  RL 63
           R+
Sbjct: 287 RV 288

[Close]
BLAST of CmaCh01G013490 vs. NCBI nr
Match: KAG6591853.1 (hypothetical protein SDJN03_14199, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.1 bits (248), Expect = 6.9e-18
Identity = 50/62 (80.65%), Postives = 57/62 (91.94%), Query Frame = 0 

Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           +AL+FVVSISLKSV EFFT IKNKPALDAVALLSFNWF+LGI AYP+LPN+AR+L PL S
Sbjct: 263 VALMFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFVLGILAYPILPNMARVLAPLAS 322

Query: 61  RL 63
           R+
Sbjct: 323 RV 324

[Close]
BLAST of CmaCh01G013490 vs. TAIR 10
Match: AT5G45310.1 (unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 77.4 bits (189), Expect = 4.5e-15
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 0 

Query: 2   ALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVP 58
           AL  VV ISLKSV +FF+ +KNKPALDAVAL+S NWFI+G   YP LP +AR++VP
Sbjct: 268 ALFTVVGISLKSVVQFFSTVKNKPALDAVALMSLNWFIVGTLTYPTLPRVARIVVP 323

The following BLAST results are available for this feature:
BLAST of CmaCh01G013490 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh01G013490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FLE13.2e-2195.08uncharacterized protein LOC111446814 OS=Cucurbita moschata OX=3662 GN=LOC1114468... [more]
A0A5A7UFG83.3e-1882.26Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B9G53.3e-1882.26uncharacterized protein LOC103487633 OS=Cucumis melo OX=3656 GN=LOC103487633 PE=... [more]
A0A6J1IHW75.7e-1880.65uncharacterized protein LOC111477072 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1F6D45.7e-1880.65uncharacterized protein LOC111442593 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of CmaCh01G013490 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6608015.16.7e-2195.08hypothetical protein SDJN03_01357, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022941541.16.7e-2195.08uncharacterized protein LOC111446814 [Cucurbita moschata][more]
XP_023523435.16.7e-2195.08uncharacterized protein LOC111787648, partial [Cucurbita pepo subsp. pepo][more]
XP_008444253.16.9e-1882.26PREDICTED: uncharacterized protein LOC103487633 [Cucumis melo][more]
KAG6591853.16.9e-1880.65hypothetical protein SDJN03_14199, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh01G013490 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G45310.14.5e-1566.07unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, infloresce... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36073FAMILY NOT NAMEDcoord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G013490.1CmaCh01G013490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane