CmaCh01G012540 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G012540
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionhistidine-rich glycoprotein-like
LocationCma_Chr01: 9026329 .. 9027152 (-)
RNA-Seq ExpressionCmaCh01G012540
SyntenyCmaCh01G012540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCAAAGTATTAACAAACAAGGCATAAATGGCTTACTCTAAAACCTTTCTCCTTCTCAGCCTCCTCCTCGCTCTTCTTTACGTCTCCTCTCATGTCTCGGCTCGTTTACTTGGTTAGTTTATGCTCGAAGCTGAGCGCTCTCTTTTTCGTTATTTGTTGAGAATATTTCGAAAAGGACAAATTTGTTTTTGTATATAGTTTTGTAGTTTATGTGGATTATTTAGTGTGGTATTAGAGGATTGGATTGTAAATTTAAGTTTGTTGTTATTTGAATTTTAGATGGATTTTTATGTTTTGGAACGAGGTTAATCTATATCATATTTTAAGTTTATATAGTTAAGTTTTTAAATTGAGGAGTAATTTATTTGATATTATTTCAACTCTGTTTTTCATTCATGTAGAGGAAAAGAAAAGTGTTGTAAAGAGTGATGACCATGATGATGATCACGACCACGGCCTTGGATACCACTATGATGGCCATGATCATGACCATGAAGATGATCATGACCACGACAAACATGACCATGATGACCACGACGATCATGACCATGATGACCACGACGATCATGACCATAATGATCATGACAAGGATGACCACGACGATCATGACCATAATGATCATGACAAGGATGACCATGACGATCATGACCACGATGATCATGACCATGATCACGATCACGACGCTGATGTCAATAGCTTGGATGATCACCATGAACAGCACGACCATGACCATGATCACGATGATGACGACCATGACCACGACCATGACCATGATCACGATGATGACGACCACGATCACGACCATGACGGCATTAAAAATTAG

mRNA sequence

CACCAAAGTATTAACAAACAAGGCATAAATGGCTTACTCTAAAACCTTTCTCCTTCTCAGCCTCCTCCTCGCTCTTCTTTACGTCTCCTCTCATGTCTCGGCTCGTTTACTTGAGGAAAAGAAAAGTGTTGTAAAGAGTGATGACCATGATGATGATCACGACCACGGCCTTGGATACCACTATGATGGCCATGATCATGACCATGAAGATGATCATGACCACGACAAACATGACCATGATGACCACGACGATCATGACCATGATGACCACGACGATCATGACCATAATGATCATGACAAGGATGACCACGACGATCATGACCATAATGATCATGACAAGGATGACCATGACGATCATGACCACGATGATCATGACCATGATCACGATCACGACGCTGATGTCAATAGCTTGGATGATCACCATGAACAGCACGACCATGACCATGATCACGATGATGACGACCATGACCACGACCATGACCATGATCACGATGATGACGACCACGATCACGACCATGACGGCATTAAAAATTAG

Coding sequence (CDS)

ATGGCTTACTCTAAAACCTTTCTCCTTCTCAGCCTCCTCCTCGCTCTTCTTTACGTCTCCTCTCATGTCTCGGCTCGTTTACTTGAGGAAAAGAAAAGTGTTGTAAAGAGTGATGACCATGATGATGATCACGACCACGGCCTTGGATACCACTATGATGGCCATGATCATGACCATGAAGATGATCATGACCACGACAAACATGACCATGATGACCACGACGATCATGACCATGATGACCACGACGATCATGACCATAATGATCATGACAAGGATGACCACGACGATCATGACCATAATGATCATGACAAGGATGACCATGACGATCATGACCACGATGATCATGACCATGATCACGATCACGACGCTGATGTCAATAGCTTGGATGATCACCATGAACAGCACGACCATGACCATGATCACGATGATGACGACCATGACCACGACCATGACCATGATCACGATGATGACGACCACGATCACGACCATGACGGCATTAAAAATTAG

Protein sequence

MAYSKTFLLLSLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYHYDGHDHDHEDDHDHDKHDHDDHDDHDHDDHDDHDHNDHDKDDHDDHDHNDHDKDDHDDHDHDDHDHDHDHDADVNSLDDHHEQHDHDHDHDDDDHDHDHDHDHDDDDHDHDHDGIKN
Homology
BLAST of CmaCh01G012540 vs. ExPASy TrEMBL
Match: A0A6J1J1J4 (histidine-rich glycoprotein-like OS=Cucurbita maxima OX=3661 GN=LOC111480431 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.0e-65
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0

Query: 1   MAYSKTFLLLSLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYHYDGHDHDHE 60
           MAYSKTFLLLSLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYHYDGHDHDHE
Sbjct: 1   MAYSKTFLLLSLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYHYDGHDHDHE 60

Query: 61  DDHDHDKHDHDDHDDHDHDDHDDHDHNDHDKDDHDDHDHNDHDKDDHDDHDHDDHDHDHD 120
           DDHDHDKHDHDDHDDHDHDDHDDHDHNDHDKDDHDDHDHNDHDKDDHDDHDHDDHDHDHD
Sbjct: 61  DDHDHDKHDHDDHDDHDHDDHDDHDHNDHDKDDHDDHDHNDHDKDDHDDHDHDDHDHDHD 120

Query: 121 HDADVNSLDDHHEQHDHDHDHDDDDHDHDHDHDHDDDDHDHDHDGIKN 169
           HDADVNSLDDHHEQHDHDHDHDDDDHDHDHDHDHDDDDHDHDHDGIKN
Sbjct: 121 HDADVNSLDDHHEQHDHDHDHDDDDHDHDHDHDHDDDDHDHDHDGIKN 168

BLAST of CmaCh01G012540 vs. ExPASy TrEMBL
Match: A0A6J1FL97 (prostatic spermine-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111446778 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 5.5e-47
Identity = 145/172 (84.30%), Postives = 153/172 (88.95%), Query Frame = 0

Query: 1   MAYSKTFLLLSLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYHYDGHDHDHE 60
           MAYSKTFLLL LLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGY YD    DH+
Sbjct: 1   MAYSKTFLLLGLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYRYD----DHD 60

Query: 61  DDHDHDKHDHDDHDDHDHDDHDDHDHNDHDKDDHDDHDHNDHDKDDHDDHDHDDH----- 120
           DDHDHDKHDHDDHDDHDHDDHD  DH+DHDKDDHDDHDH+DHDKDDHDD+DHDDH     
Sbjct: 61  DDHDHDKHDHDDHDDHDHDDHDKDDHDDHDKDDHDDHDHDDHDKDDHDDNDHDDHDKDDH 120

Query: 121 ------DHDHDHDADVNSLDDHHEQHDHDHDHDDDDHDHDHDHDHDDDDHDH 162
                 DHDHDHDA+VNSLDDHHEQ+DHDHDHDDDDHDH+HDHDHDDDDHD+
Sbjct: 121 DDHDYDDHDHDHDANVNSLDDHHEQYDHDHDHDDDDHDHNHDHDHDDDDHDN 168

BLAST of CmaCh01G012540 vs. ExPASy TrEMBL
Match: A0A1S3QDS3 (histidine-rich glycoprotein-like OS=Salmo salar OX=8030 GN=LOC106590924 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.5e-07
Identity = 94/158 (59.49%), Postives = 105/158 (66.46%), Query Frame = 0

Query: 37  SDDHDDDHDHGLGYHYDGHDHDHEDDHDHDKHDHDDHD---DHDHDDHD-DHDHNDHDKD 96
           S +HD DHDH   + +D HDHDH++DHDHD HDHD H+   DHDHD HD DHD +DHD D
Sbjct: 59  SHNHDQDHDHDHDHDHDSHDHDHDNDHDHDSHDHDSHNHDHDHDHDSHDHDHDSHDHDHD 118

Query: 97  DHD---------DHDH--------NDHDKD-DHD-DHDHDDHDHDHDHDADV---NSLD- 156
            HD         DHDH        NDHD+D DHD DHDHD HDHDHDHD D+   N  D 
Sbjct: 119 SHDHDHDNDHDQDHDHNNDSHDHDNDHDQDQDHDNDHDHDSHDHDHDHDHDIDHDNDHDN 178

Query: 157 DHHEQHDHDHDHDDDDHDHDHDHDHD---DDDHDHDHD 165
           DH   HD+DHDHD  DHD+DHDHDHD   D DHDHDHD
Sbjct: 179 DHDNDHDNDHDHDSHDHDNDHDHDHDHDHDQDHDHDHD 216

BLAST of CmaCh01G012540 vs. ExPASy TrEMBL
Match: A0A1S3QC47 (histidine-rich glycoprotein-like OS=Salmo salar OX=8030 GN=LOC106590925 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-06
Identity = 96/137 (70.07%), Postives = 102/137 (74.45%), Query Frame = 0

Query: 39  DHDDDHDHGLGYHYDGHDHDHED-DHDHD-KHDHD-DHDDHDHD--DHD-DHDHNDHDKD 98
           DHD DHDH   + +D HDHDH+  DHDHD  HDHD DHDDHDHD  DHD DHDH+ HD D
Sbjct: 70  DHDHDHDHDNDHDHDSHDHDHDSHDHDHDHDHDHDHDHDDHDHDSLDHDPDHDHDSHDHD 129

Query: 99  -DHD-DHDH-NDHDKDDHDDHDHDDHDHDHDHDADVNSLDDHHEQHDHDHDHD-DDDHDH 158
            DHD DHDH NDHD D H DHDHD HDHDHDHD D     DH   HDHDHDHD D+DHDH
Sbjct: 130 HDHDHDHDHDNDHDHDSH-DHDHDSHDHDHDHDHD----RDHDHDHDHDHDHDNDNDHDH 189

Query: 159 DHDHDHDDD-DHDHDHD 165
           D+DHDHD D DHDHDHD
Sbjct: 190 DNDHDHDQDHDHDHDHD 201

BLAST of CmaCh01G012540 vs. ExPASy TrEMBL
Match: A0A1Q9CBF0 (Nipped-B-like protein B OS=Symbiodinium microadriaticum OX=2951 GN=nipblb PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.2e-05
Identity = 88/131 (67.18%), Postives = 94/131 (71.76%), Query Frame = 0

Query: 39   DHDDDHDHGLGYHYDGHDHDHEDDHDHDKHDHDDHDDHDHDDHDDHDH-NDHDKDDHDDH 98
            DHD DHDH   + +D HDHDH+ DHDHD HDHD   DHDHD   DHDH +DHD D   DH
Sbjct: 944  DHDHDHDHDHDHDHD-HDHDHDHDHDHD-HDHDHDHDHDHDHDHDHDHDHDHDHDHDHDH 1003

Query: 99   DH-NDHDKDDHDDHDHD-DHDHDHDHDADVNSLDDHHEQHDHDHDHD-DDDHDHDHDHDH 158
            DH +DHD D   DHDHD DHDHDHDHD D +   DH   HDHDHDHD D DHDHDHDHDH
Sbjct: 1004 DHDHDHDHDHDHDHDHDHDHDHDHDHDHDHDHDHDHDHDHDHDHDHDHDHDHDHDHDHDH 1063

Query: 159  D-DDDHDHDHD 165
            D D DHDHDHD
Sbjct: 1064 DHDHDHDHDHD 1072

BLAST of CmaCh01G012540 vs. NCBI nr
Match: XP_022981233.1 (histidine-rich glycoprotein-like [Cucurbita maxima])

HSP 1 Score: 258.5 bits (659), Expect = 4.1e-65
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0

Query: 1   MAYSKTFLLLSLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYHYDGHDHDHE 60
           MAYSKTFLLLSLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYHYDGHDHDHE
Sbjct: 1   MAYSKTFLLLSLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYHYDGHDHDHE 60

Query: 61  DDHDHDKHDHDDHDDHDHDDHDDHDHNDHDKDDHDDHDHNDHDKDDHDDHDHDDHDHDHD 120
           DDHDHDKHDHDDHDDHDHDDHDDHDHNDHDKDDHDDHDHNDHDKDDHDDHDHDDHDHDHD
Sbjct: 61  DDHDHDKHDHDDHDDHDHDDHDDHDHNDHDKDDHDDHDHNDHDKDDHDDHDHDDHDHDHD 120

Query: 121 HDADVNSLDDHHEQHDHDHDHDDDDHDHDHDHDHDDDDHDHDHDGIKN 169
           HDADVNSLDDHHEQHDHDHDHDDDDHDHDHDHDHDDDDHDHDHDGIKN
Sbjct: 121 HDADVNSLDDHHEQHDHDHDHDDDDHDHDHDHDHDDDDHDHDHDGIKN 168

BLAST of CmaCh01G012540 vs. NCBI nr
Match: KAG6607931.1 (hypothetical protein SDJN03_01273, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 220.7 bits (561), Expect = 9.5e-54
Identity = 156/176 (88.64%), Postives = 161/176 (91.48%), Query Frame = 0

Query: 1   MAYSKTFLLLSLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYHYDGHDHDHE 60
           MAYSKTFLLL LLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGY +D HDHDH+
Sbjct: 1   MAYSKTFLLLGLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYRHDDHDHDHD 60

Query: 61  DDHDHDK--------HDHDDHDDHDHDDHDDHDHNDHDKDDHDDHDHNDHDKDDHDDHDH 120
           DDHDHDK        HDHDDHDDHD DDHDDHDH+DHDKDDHDDHDH+DHDKDDHDDHDH
Sbjct: 61  DDHDHDKYDHDGHDDHDHDDHDDHDKDDHDDHDHDDHDKDDHDDHDHDDHDKDDHDDHDH 120

Query: 121 DDHDHDHDHDADVNSLDDHHEQHDHDHDHDDDDHDHDHDHDHDDDDHDHDHDGIKN 169
           D  DHDHDHDA+VNSLDDHHEQHDHDHDHDDDDHDHDHDHDHDDDDHDHDHD IKN
Sbjct: 121 D--DHDHDHDANVNSLDDHHEQHDHDHDHDDDDHDHDHDHDHDDDDHDHDHDDIKN 174

BLAST of CmaCh01G012540 vs. NCBI nr
Match: KAG7037450.1 (hypothetical protein SDJN02_01077, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.8 bits (538), Expect = 4.4e-51
Identity = 154/192 (80.21%), Postives = 160/192 (83.33%), Query Frame = 0

Query: 1   MAYSKTFLLLSLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYHYDGHDHDHE 60
           MAYSKTFLLL LLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHG GYH+D    DH+
Sbjct: 1   MAYSKTFLLLGLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGFGYHHD----DHD 60

Query: 61  DDHDHDKHDHDDHDDHDHDDHDDHDHNDHDKDDHDDHDHNDHDKDDHDDHDHDDH----- 120
           DDHDHDKHDHDDHDDHD DDHDDHDH+DHDKDDHDDHDH+DHDKDDHDDHDHDDH     
Sbjct: 61  DDHDHDKHDHDDHDDHDKDDHDDHDHDDHDKDDHDDHDHDDHDKDDHDDHDHDDHDKDDH 120

Query: 121 -------------------DHDHDHDADVNSLDDHHEQHDHDHDHDDDDHDHDHDHDHDD 169
                              DHDHDHDA+VNSLDDHHEQHDHDHDHDDDDHDH+HDHDHDD
Sbjct: 121 DDHDHDDHDKDDHDDHDHDDHDHDHDANVNSLDDHHEQHDHDHDHDDDDHDHNHDHDHDD 180

BLAST of CmaCh01G012540 vs. NCBI nr
Match: XP_022941496.1 (prostatic spermine-binding protein-like [Cucurbita moschata])

HSP 1 Score: 197.2 bits (500), Expect = 1.1e-46
Identity = 145/172 (84.30%), Postives = 153/172 (88.95%), Query Frame = 0

Query: 1   MAYSKTFLLLSLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYHYDGHDHDHE 60
           MAYSKTFLLL LLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGY YD    DH+
Sbjct: 1   MAYSKTFLLLGLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYRYD----DHD 60

Query: 61  DDHDHDKHDHDDHDDHDHDDHDDHDHNDHDKDDHDDHDHNDHDKDDHDDHDHDDH----- 120
           DDHDHDKHDHDDHDDHDHDDHD  DH+DHDKDDHDDHDH+DHDKDDHDD+DHDDH     
Sbjct: 61  DDHDHDKHDHDDHDDHDHDDHDKDDHDDHDKDDHDDHDHDDHDKDDHDDNDHDDHDKDDH 120

Query: 121 ------DHDHDHDADVNSLDDHHEQHDHDHDHDDDDHDHDHDHDHDDDDHDH 162
                 DHDHDHDA+VNSLDDHHEQ+DHDHDHDDDDHDH+HDHDHDDDDHD+
Sbjct: 121 DDHDYDDHDHDHDANVNSLDDHHEQYDHDHDHDDDDHDHNHDHDHDDDDHDN 168

BLAST of CmaCh01G012540 vs. NCBI nr
Match: XP_023525565.1 (prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.3 bits (495), Expect = 4.3e-46
Identity = 146/174 (83.91%), Postives = 154/174 (88.51%), Query Frame = 0

Query: 1   MAYSKTFLLLSLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYHYDGHDHDHE 60
           MAYSKTFLLL LLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYH+D HDHDH+
Sbjct: 1   MAYSKTFLLLGLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYHHDDHDHDHD 60

Query: 61  DDHDHDKHDHDDHDDHDHDDHDDHDHNDHDKDDHDDHDHNDHDKDDHDDHDHDDH----- 120
           DDHD+DK+DHDDHDDHDHDDHD  DH+DHDKDDHD  DH+DHDKDDHDDHDHDDH     
Sbjct: 61  DDHDNDKYDHDDHDDHDHDDHDKDDHDDHDKDDHDKDDHDDHDKDDHDDHDHDDHDKDDH 120

Query: 121 -DHDHDHDADVNSLDDHHEQHDHDHDHDDDDHDHDHDHDHDDDDHDHDHDGIKN 169
            DHDHDHDA+VNSLDDH     HDHDHD+D  DHDHDHDHDDDDHDHDHD IKN
Sbjct: 121 DDHDHDHDANVNSLDDH-----HDHDHDND--DHDHDHDHDDDDHDHDHDDIKN 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1J1J42.0e-65100.00histidine-rich glycoprotein-like OS=Cucurbita maxima OX=3661 GN=LOC111480431 PE=... [more]
A0A6J1FL975.5e-4784.30prostatic spermine-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A1S3QDS35.5e-0759.49histidine-rich glycoprotein-like OS=Salmo salar OX=8030 GN=LOC106590924 PE=4 SV=... [more]
A0A1S3QC472.1e-0670.07histidine-rich glycoprotein-like OS=Salmo salar OX=8030 GN=LOC106590925 PE=4 SV=... [more]
A0A1Q9CBF05.2e-0567.18Nipped-B-like protein B OS=Symbiodinium microadriaticum OX=2951 GN=nipblb PE=4 S... [more]
Match NameE-valueIdentityDescription
XP_022981233.14.1e-65100.00histidine-rich glycoprotein-like [Cucurbita maxima][more]
KAG6607931.19.5e-5488.64hypothetical protein SDJN03_01273, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7037450.14.4e-5180.21hypothetical protein SDJN02_01077, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022941496.11.1e-4684.30prostatic spermine-binding protein-like [Cucurbita moschata][more]
XP_023525565.14.3e-4683.91prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G012540.1CmaCh01G012540.1mRNA