Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGTACAACCAGCAATGAGAGAGAAATCGATAGGTGTAAGGGCAGGTCTAGAAAGAGGAAAAAAAATATGGGGAAGATTGAAAGGAGTCGGTATCAGTCAAAGAGTCATTCGCCATCTCTTTATGTAGTGAAGGTAGTGATCATCAGAATGAGGTTGAGGATGTCTGTTATGTTGAAAATAACTTGAGACGACTAAGATCTGTAATCGTTGTAGTAGGAGAGGAAGATAAATTAGAGACGTTTGATGGGAATGAACGACAAGAAAACGTCACACATCAACCTGATCATGACCACCCTTCTTTTGGGGATATGGACAGAAATGATGGGATGAGTAATAGAGAATTAGATAATCTTATATCTGAAGAGGCACCAGTGATTATAACTGACAATAGAAACTCTATAGTTGTGAAGGATGATGGAGTTCAAAATGAAGGAAGCAACAATAACCATGGAGGATCAACTCATGACCATCCTTTATATGAAAGAAAGAATGGTTGTTCTGTAAACACCGACGACACAAACTATATCGACTTAGAGTCGATTTTAAGACAGAGGGCTTTGGAAAACTTAAGAAAGTACAAACGGGTGCTCCCAAGGAATGTGGAAACTCCTGCTAATTGCGAAGTTGACAAAAGTAATGATGCGAAGCAACTGGACTCCCCTGTCTCTAAGTCGGTTCACGTGACTTCCCCTAGGGATGAGGCTGGGATAAATGGTAACAGGTTCTCTAGACAAGGTGGAGGGAATGCTGTAAATTCAATGATAATTGAAAATGGTGTTAAATCTACCGATGAAATGGACTCGGCCGTTGCATCTACGTATGATCCTGTCTGTTCTTCTCAGCGCCTGGGTAAGATTTCCAATGGAAGCAATGATATGAATGAACTGAAGCAGCATATTTCGTCAGTAGACCAGGAGGTTGTAAATGATAGGATTTGCCAGAAGGCAGATGCAGATATTTGTCCAACAACTAACAGAAGCAATTTGGTTATTGCAGCTTTGAAGCCCTGAGTCGAATGTTGATTCTCTTACTGAGCAGGCATCTGCCTCTCAGGAACCTATCCAAACAAAGCCATCTAAATCCGACATGTGCGACGATGAAACCGCTCAAACTCAGACCCAGATGAGGAACAATGATGTTCAAAACATTGGTGATGGTTTTGGATCTCCACCTCACAAGCCTTCTTCTTCTTCTTCCGTTAATTCTATTTCAGGAGAAAATCTCTTGAACGAGTCCAGACACGAGAGTGGTGAAGGCTCACAGTTCGAACAGAAAACCATGTCGGTAAAGCGGGGTGGTGAAATGGTGCAGGTGAAAATATTGAGTACTGAATAAATTTATATATTCAGCAGGGAGTATAACTGTACTAGTTTTCTTAAGAACTTGGAACGGATCTGCAAATATCCATTTCAGGTGAACTACAAGGTGTACATTCCAAAGAGAGCTCCTGGTTTGAGGAGGCAACTCAAGCGGTGACTTAAGATCCATGATTTTGCAGCCTTGTAGGATGCTCCTGTTGCTTGCCATTCCAAAGATTGTGAAGTTTTGGATTAGAATTTTCCATTCGCTTTCTGTGCGAAGGATCTATAAAGCCTTGAAATATGAACAATAATTAGTGCAGCCAATTGGTAGCATTTGTCTGTTAACTTTTCCATCAGAATGATCAATATGACCATTTGATCAAACGAGATCCAAGTTTTCTTTGTGAAATATTGGTAGCATTTTATTTGATCTATCATGAAATATTGGG
mRNA sequence
ATGGGAGTACAACCAGCAATGAGAGAGAAATCGATAGGTGTAAGGGCAGGTAGTGATCATCAGAATGAGGTTGAGGATGTCTGTTATGTTGAAAATAACTTGAGACGACTAAGATCTGTAATCGTTGTAGTAGGAGAGGAAGATAAATTAGAGACGTTTGATGGGAATGAACGACAAGAAAACGTCACACATCAACCTGATCATGACCACCCTTCTTTTGGGGATATGGACAGAAATGATGGGATGAGTAATAGAGAATTAGATAATCTTATATCTGAAGAGGCACCAGTGATTATAACTGACAATAGAAACTCTATAGTTGTGAAGGATGATGGAGTTCAAAATGAAGGAAGCAACAATAACCATGGAGGATCAACTCATGACCATCCTTTATATGAAAGAAAGAATGGTTGTTCTGTAAACACCGACGACACAAACTATATCGACTTAGAGTCGATTTTAAGACAGAGGGCTTTGGAAAACTTAAGAAAGTACAAACGGGTGCTCCCAAGGAATGTGGAAACTCCTGCTAATTGCGAAGTTGACAAAAGTAATGATGCGAAGCAACTGGACTCCCCTGTCTCTAAGTCGGTTCACGTGACTTCCCCTAGGGATGAGGCTGGGATAAATGGTAACAGGTTCTCTAGACAAGGTGGAGGGAATGCTGTAAATTCAATGATAATTGAAAATGGTGTTAAATCTACCGATGAAATGGACTCGGCCGTTGCATCTACGTATGATCCTGTCTGTTCTTCTCAGCGCCTGGGTAAGATTTCCAATGGAAGCAATGATATGAATGAACTGAAGCAGCATATTTCGTCAGTAGACCAGGAGGTTGTAAATGATAGGATTTGCCAGAAGGCAGATGCAGATATTTGTCCAACAACTAACAGAAGCAATTTGGCATCTGCCTCTCAGGAACCTATCCAAACAAAGCCATCTAAATCCGACATGTGCGACGATGAAACCGCTCAAACTCAGACCCAGATGAGGAACAATGATGTTCAAAACATTGGTGATGGTTTTGGATCTCCACCTCACAAGCCTTCTTCTTCTTCTTCCGTTAATTCTATTTCAGGAGAAAATCTCTTGAACGAGTCCAGACACGAGAGTGGTGAAGGCTCACAGTTCGAACAGAAAACCATGTCGGTAAAGCGGGGTGGTGAAATGGTGCAGGTGAACTACAAGGTGTACATTCCAAAGAGAGCTCCTGGTTTGAGGAGGCAACTCAAGCGGTGACTTAAGATCCATGATTTTGCAGCCTTGTAGGATGCTCCTGTTGCTTGCCATTCCAAAGATTGTGAAGTTTTGGATTAGAATTTTCCATTCGCTTTCTGTGCGAAGGATCTATAAAGCCTTGAAATATGAACAATAATTAGTGCAGCCAATTGGTAGCATTTGTCTGTTAACTTTTCCATCAGAATGATCAATATGACCATTTGATCAAACGAGATCCAAGTTTTCTTTGTGAAATATTGGTAGCATTTTATTTGATCTATCATGAAATATTGGG
Coding sequence (CDS)
ATGGGAGTACAACCAGCAATGAGAGAGAAATCGATAGGTGTAAGGGCAGGTAGTGATCATCAGAATGAGGTTGAGGATGTCTGTTATGTTGAAAATAACTTGAGACGACTAAGATCTGTAATCGTTGTAGTAGGAGAGGAAGATAAATTAGAGACGTTTGATGGGAATGAACGACAAGAAAACGTCACACATCAACCTGATCATGACCACCCTTCTTTTGGGGATATGGACAGAAATGATGGGATGAGTAATAGAGAATTAGATAATCTTATATCTGAAGAGGCACCAGTGATTATAACTGACAATAGAAACTCTATAGTTGTGAAGGATGATGGAGTTCAAAATGAAGGAAGCAACAATAACCATGGAGGATCAACTCATGACCATCCTTTATATGAAAGAAAGAATGGTTGTTCTGTAAACACCGACGACACAAACTATATCGACTTAGAGTCGATTTTAAGACAGAGGGCTTTGGAAAACTTAAGAAAGTACAAACGGGTGCTCCCAAGGAATGTGGAAACTCCTGCTAATTGCGAAGTTGACAAAAGTAATGATGCGAAGCAACTGGACTCCCCTGTCTCTAAGTCGGTTCACGTGACTTCCCCTAGGGATGAGGCTGGGATAAATGGTAACAGGTTCTCTAGACAAGGTGGAGGGAATGCTGTAAATTCAATGATAATTGAAAATGGTGTTAAATCTACCGATGAAATGGACTCGGCCGTTGCATCTACGTATGATCCTGTCTGTTCTTCTCAGCGCCTGGGTAAGATTTCCAATGGAAGCAATGATATGAATGAACTGAAGCAGCATATTTCGTCAGTAGACCAGGAGGTTGTAAATGATAGGATTTGCCAGAAGGCAGATGCAGATATTTGTCCAACAACTAACAGAAGCAATTTGGCATCTGCCTCTCAGGAACCTATCCAAACAAAGCCATCTAAATCCGACATGTGCGACGATGAAACCGCTCAAACTCAGACCCAGATGAGGAACAATGATGTTCAAAACATTGGTGATGGTTTTGGATCTCCACCTCACAAGCCTTCTTCTTCTTCTTCCGTTAATTCTATTTCAGGAGAAAATCTCTTGAACGAGTCCAGACACGAGAGTGGTGAAGGCTCACAGTTCGAACAGAAAACCATGTCGGTAAAGCGGGGTGGTGAAATGGTGCAGGTGAACTACAAGGTGTACATTCCAAAGAGAGCTCCTGGTTTGAGGAGGCAACTCAAGCGGTGA
Protein sequence
MGVQPAMREKSIGVRAGSDHQNEVEDVCYVENNLRRLRSVIVVVGEEDKLETFDGNERQENVTHQPDHDHPSFGDMDRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKNGCSVNTDDTNYIDLESILRQRALENLRKYKRVLPRNVETPANCEVDKSNDAKQLDSPVSKSVHVTSPRDEAGINGNRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVCSSQRLGKISNGSNDMNELKQHISSVDQEVVNDRICQKADADICPTTNRSNLASASQEPIQTKPSKSDMCDDETAQTQTQMRNNDVQNIGDGFGSPPHKPSSSSSVNSISGENLLNESRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLRRQLKR
Homology
BLAST of CmaCh01G012180 vs. ExPASy TrEMBL
Match:
A0A6J1FN60 (pre-mRNA-splicing factor CWC22 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446687 PE=4 SV=1)
HSP 1 Score: 697.2 bits (1798), Expect = 4.1e-197
Identity = 372/414 (89.86%), Postives = 379/414 (91.55%), Query Frame = 0
Query: 17 GSDHQNEVEDVCYVENNLRRLRSVIVVVGEEDKLETFDGNERQENVTHQPDHDHPSFGDM 76
GSDHQNEVE+VCYVENN RRLRSVIVVVGEEDKLETFDGNE QENVTHQPDHDHPSFGD+
Sbjct: 202 GSDHQNEVENVCYVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDI 261
Query: 77 DRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN 136
+RNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN
Sbjct: 262 NRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN 321
Query: 137 GCSVNTDDTNYIDLESILRQRALENLRKYKRVLPRNVETPANCEVDKSNDAKQLDSPVSK 196
GCSVNTDDTN IDLESILRQRALENLRKYKRVLPRNVETPAN EVD SNDAKQLDSPVSK
Sbjct: 322 GCSVNTDDTNCIDLESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSPVSK 381
Query: 197 SVHVTSPRDEAGINGNRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVCSSQRLG 256
VHVTSPRDEAGING+RFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPV SSQ LG
Sbjct: 382 LVHVTSPRDEAGINGHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQHLG 441
Query: 257 KISNGSNDMNELKQHISSVDQEVVNDRICQKADADICPTTNRSNL--------------- 316
KISNGSNDMNELKQHISSVDQEVVND IC ADADICPTTNRSNL
Sbjct: 442 KISNGSNDMNELKQHISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVDSLT 501
Query: 317 --ASASQEPIQTKPSKSDMCDDETAQTQTQMRNNDVQNIGDGFGSPPHKPSSSSSVNSIS 376
ASASQE IQTKPSKSDM D ET QTQTQMRNNDVQNIGDGFGS HKPSSSSS+NSIS
Sbjct: 502 EQASASQESIQTKPSKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSIS 561
Query: 377 GENLLNESRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGL-RRQLKR 413
GE+LLN+SRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGL RRQLKR
Sbjct: 562 GESLLNDSRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 615
BLAST of CmaCh01G012180 vs. ExPASy TrEMBL
Match:
A0A6J1FTH5 (pre-mRNA-splicing factor CWC22 homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446687 PE=4 SV=1)
HSP 1 Score: 697.2 bits (1798), Expect = 4.1e-197
Identity = 372/414 (89.86%), Postives = 379/414 (91.55%), Query Frame = 0
Query: 17 GSDHQNEVEDVCYVENNLRRLRSVIVVVGEEDKLETFDGNERQENVTHQPDHDHPSFGDM 76
GSDHQNEVE+VCYVENN RRLRSVIVVVGEEDKLETFDGNE QENVTHQPDHDHPSFGD+
Sbjct: 184 GSDHQNEVENVCYVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDI 243
Query: 77 DRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN 136
+RNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN
Sbjct: 244 NRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN 303
Query: 137 GCSVNTDDTNYIDLESILRQRALENLRKYKRVLPRNVETPANCEVDKSNDAKQLDSPVSK 196
GCSVNTDDTN IDLESILRQRALENLRKYKRVLPRNVETPAN EVD SNDAKQLDSPVSK
Sbjct: 304 GCSVNTDDTNCIDLESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSPVSK 363
Query: 197 SVHVTSPRDEAGINGNRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVCSSQRLG 256
VHVTSPRDEAGING+RFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPV SSQ LG
Sbjct: 364 LVHVTSPRDEAGINGHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQHLG 423
Query: 257 KISNGSNDMNELKQHISSVDQEVVNDRICQKADADICPTTNRSNL--------------- 316
KISNGSNDMNELKQHISSVDQEVVND IC ADADICPTTNRSNL
Sbjct: 424 KISNGSNDMNELKQHISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVDSLT 483
Query: 317 --ASASQEPIQTKPSKSDMCDDETAQTQTQMRNNDVQNIGDGFGSPPHKPSSSSSVNSIS 376
ASASQE IQTKPSKSDM D ET QTQTQMRNNDVQNIGDGFGS HKPSSSSS+NSIS
Sbjct: 484 EQASASQESIQTKPSKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSIS 543
Query: 377 GENLLNESRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGL-RRQLKR 413
GE+LLN+SRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGL RRQLKR
Sbjct: 544 GESLLNDSRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 597
BLAST of CmaCh01G012180 vs. ExPASy TrEMBL
Match:
A0A6J1FKY7 (pre-mRNA-splicing factor CWC22 homolog isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111446687 PE=4 SV=1)
HSP 1 Score: 607.4 bits (1565), Expect = 4.3e-170
Identity = 334/397 (84.13%), Postives = 344/397 (86.65%), Query Frame = 0
Query: 17 GSDHQNEVEDVCYVENNLRRLRSVIVVVGEEDKLETFDGNERQENVTHQPDHDHPSFGDM 76
GSDHQNEVE+VCYVENN RRLRSVIVVVGEEDKLETFDGNE QENVTHQPDHDHPSFGD+
Sbjct: 202 GSDHQNEVENVCYVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDI 261
Query: 77 DRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN 136
+RNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN
Sbjct: 262 NRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN 321
Query: 137 GCSVNTDDTNYIDLESILRQRALENLRKYKRVLPRNVETPANCEVDKSNDAKQLDSPVSK 196
GCSVNTDDTN IDLESILRQRALENLRKYKRVLPRNVETPAN EVD SNDAKQLDSPVSK
Sbjct: 322 GCSVNTDDTNCIDLESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSPVSK 381
Query: 197 SVHVTSPRDEAGINGNRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVCSSQRLG 256
VHVTSPRDEAGING+RFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPV SSQ L
Sbjct: 382 LVHVTSPRDEAGINGHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQHLA 441
Query: 257 KISNGSNDMNELKQHISSVDQEVVNDRICQKADADICPTTNRSNLASASQEPIQTKPSKS 316
LK S+VD + + ASASQE IQTKPSKS
Sbjct: 442 -----------LKPE-SNVD--------------------SLTEQASASQESIQTKPSKS 501
Query: 317 DMCDDETAQTQTQMRNNDVQNIGDGFGSPPHKPSSSSSVNSISGENLLNESRHESGEGSQ 376
DM D ET QTQTQMRNNDVQNIGDGFGS HKPSSSSS+NSISGE+LLN+SRHESGEGSQ
Sbjct: 502 DMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSISGESLLNDSRHESGEGSQ 561
Query: 377 FEQKTMSVKRGGEMVQVNYKVYIPKRAPGL-RRQLKR 413
FEQKTMSVKRGGEMVQVNYKVYIPKRAPGL RRQLKR
Sbjct: 562 FEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 566
BLAST of CmaCh01G012180 vs. ExPASy TrEMBL
Match:
A0A6J1CDR0 (uncharacterized protein LOC111010601 OS=Momordica charantia OX=3673 GN=LOC111010601 PE=4 SV=1)
HSP 1 Score: 515.0 bits (1325), Expect = 2.9e-142
Identity = 300/422 (71.09%), Postives = 325/422 (77.01%), Query Frame = 0
Query: 17 GSDHQNEVEDVCYVENNLRRLRSVIVVVGEEDKLETFDGNERQENVTHQPDHDHPSFGDM 76
GSD+QNEVED YVENN RRLRSVIVVVGEE+KL+TFDGNE+QE V H PD DHPSFGDM
Sbjct: 188 GSDYQNEVEDGSYVENNFRRLRSVIVVVGEENKLKTFDGNEQQEEVMHHPDDDHPSFGDM 247
Query: 77 DRNDGMSNRELDNLISEEA-------PVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDH 136
D NDGMS RELD + S EA V+I D RN +VVKD GVQNEGSNNNHGG T+DH
Sbjct: 248 DSNDGMSKRELDRVTSNEASEVENKKEVVIPDIRNFLVVKDGGVQNEGSNNNHGGVTNDH 307
Query: 137 PLYERKNGCSVNTDDTNYIDLESILRQRALENLRKYKRVLPRNVETPANCEVDKSNDAKQ 196
PL E NG S NTD N IDLESILRQRALENLRK+K V P+NVET ANC+VD SNDAKQ
Sbjct: 308 PLNEGNNG-SGNTDRINCIDLESILRQRALENLRKFKGVPPKNVETSANCQVDNSNDAKQ 367
Query: 197 LDSPVSKSVHVTSPRDEAGINGNRFSRQGGGNAVNSMII-ENGVKSTDEMDSAVASTYDP 256
L SPVS SV + SPRD+A ING FS QGGGNAVN MI+ ENGV+ST+ +DSAVAST+DP
Sbjct: 368 LYSPVSNSVRIKSPRDDAEINGKGFSGQGGGNAVNPMIVEENGVESTNAIDSAVASTHDP 427
Query: 257 VCSSQRLGKISNGSNDMNELKQHISSVDQEVVNDRICQKADADICPTTNRSNL------- 316
+ SSQ LGKIS+ SN MNELKQ ISS+DQE VND ICQK DADIC TT+RSNL
Sbjct: 428 IYSSQNLGKISSTSNGMNELKQDISSLDQEAVNDNICQKVDADICSTTSRSNLVYAALRP 487
Query: 317 ----------ASASQEPIQTKPSKSDMCDDETAQTQTQMRNNDVQNIGDGFGSPPHKPSS 376
ASA QE IQTKPS SDM DE AQ Q Q RNND QNI +GF S HKP
Sbjct: 488 DSKVDFLVKQASAPQEYIQTKPSISDMGVDEIAQMQIQTRNNDDQNIVNGFDSSAHKP-- 547
Query: 377 SSSVNSISGENLLNESRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGL-RRQL 413
SSS+N SGEN LN+ RHESGEGSQFEQKTMSV RGGEMVQVNYKVYIPKRAP L RRQL
Sbjct: 548 SSSLNYFSGENSLNKPRHESGEGSQFEQKTMSVMRGGEMVQVNYKVYIPKRAPALARRQL 606
BLAST of CmaCh01G012180 vs. ExPASy TrEMBL
Match:
A0A6J1F6D1 (uncharacterized protein LOC111442542 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442542 PE=4 SV=1)
HSP 1 Score: 507.7 bits (1306), Expect = 4.6e-140
Identity = 292/422 (69.19%), Postives = 330/422 (78.20%), Query Frame = 0
Query: 17 GSDHQNEVEDVCYVENNLRRLRSVIVVVGEEDKLETFDGNERQENVTHQPDHDHPSFGDM 76
GSD QNEVED YVEN+ RRL+S+IVVVGEED+L+TF GNE+QE VTHQ D +HPSFGDM
Sbjct: 190 GSDFQNEVEDDSYVENSCRRLKSIIVVVGEEDELKTFVGNEQQEAVTHQLDDNHPSFGDM 249
Query: 77 DRNDGMSNRELDNLISEEAP-------VIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDH 136
+ DG S RELD +IS+EAP ++ DNRNS+++ DDGV+NEGSN NHGG T+DH
Sbjct: 250 NSKDGTSKRELDYVISKEAPEVESKNKIVTPDNRNSLILNDDGVRNEGSNKNHGGVTNDH 309
Query: 137 PLYERKNGCSVNTDDTNYIDLESILRQRALENLRKYKRVLPRNVETPANCEVDKSNDAKQ 196
L ERKNGCS NT+ N IDLESILRQ+ALENLRK+K V PRNVE ANC+V+ +NDAKQ
Sbjct: 310 SLDERKNGCSGNTESINCIDLESILRQKALENLRKFKGVSPRNVEIIANCKVENNNDAKQ 369
Query: 197 LDSPVSKSVHVTSPRDEAGINGNRFSRQGGGNAVNSMIIE-NGVKSTDEMDSAVASTYDP 256
L SPVSKSVHVT PRD+A IN FSRQ GG+AVNSMI++ NG KSTD +D+AVAS +DP
Sbjct: 370 LISPVSKSVHVTFPRDDAEINVKGFSRQDGGDAVNSMIVKGNGFKSTDAIDTAVASMHDP 429
Query: 257 VCSSQRLGKISNGSNDMNELKQHISSVDQEVVNDRICQKADADICPTTNRSNL------- 316
VCSSQ LGKISNGSN MNE KQ ISS+DQEV+ND IC KADADI TTNRSNL
Sbjct: 430 VCSSQNLGKISNGSNGMNEPKQDISSLDQEVINDNICLKADADIYSTTNRSNLVIAAFRP 489
Query: 317 ----------ASASQEPIQTKPSKSDMCDDETAQTQTQMRNNDVQNIGDGFGSPPHKPSS 376
AS QE IQTK S SD+ DETAQTQTQM NND QNI +GFGS +K S
Sbjct: 490 ESKVDSFIKKASVDQECIQTKSSISDIVVDETAQTQTQMTNNDDQNIRNGFGSSAYK--S 549
Query: 377 SSSVNSISGENLLNESRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGL-RRQL 413
SSS+N ISGEN L++SR ESGEGSQFEQKTMSV RGGEMVQVNYKVYIPKRAP L RRQL
Sbjct: 550 SSSLNPISGENRLDKSRQESGEGSQFEQKTMSVMRGGEMVQVNYKVYIPKRAPALTRRQL 609
BLAST of CmaCh01G012180 vs. NCBI nr
Match:
XP_023525531.1 (uncharacterized protein LOC111789118 isoform X1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 715.7 bits (1846), Expect = 2.3e-202
Identity = 378/414 (91.30%), Postives = 386/414 (93.24%), Query Frame = 0
Query: 17 GSDHQNEVEDVCYVENNLRRLRSVIVVVGEEDKLETFDGNERQENVTHQPDHDHPSFGDM 76
GSDHQNEVEDVCYVENN RRLRSVIV+VGEEDKLETFDGNE QENVTHQPDHDHPSFGD+
Sbjct: 204 GSDHQNEVEDVCYVENNFRRLRSVIVIVGEEDKLETFDGNELQENVTHQPDHDHPSFGDI 263
Query: 77 DRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN 136
+RNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN
Sbjct: 264 NRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN 323
Query: 137 GCSVNTDDTNYIDLESILRQRALENLRKYKRVLPRNVETPANCEVDKSNDAKQLDSPVSK 196
GCSVNTDDTN IDLESILRQRALENLRKYKRVLPRNVETPANCEVD SNDAKQLDSPVSK
Sbjct: 324 GCSVNTDDTNCIDLESILRQRALENLRKYKRVLPRNVETPANCEVDNSNDAKQLDSPVSK 383
Query: 197 SVHVTSPRDEAGINGNRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVCSSQRLG 256
SVHVTSPRDEAGING+RFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPV SSQRLG
Sbjct: 384 SVHVTSPRDEAGINGDRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQRLG 443
Query: 257 KISNGSNDMNELKQHISSVDQEVVNDRICQKADADICPTTNRSNL--------------- 316
K+SNGSND+NELKQHISSVDQEVVND ICQKADADICPTTNRSNL
Sbjct: 444 KVSNGSNDLNELKQHISSVDQEVVNDSICQKADADICPTTNRSNLVIAALKPESNVDSLT 503
Query: 317 --ASASQEPIQTKPSKSDMCDDETAQTQTQMRNNDVQNIGDGFGSPPHKPSSSSSVNSIS 376
ASASQE IQTKPSKS+M D ETAQTQTQMRNNDVQNIGDGFGSP HKPSSSSS+NSIS
Sbjct: 504 EQASASQESIQTKPSKSNMGDGETAQTQTQMRNNDVQNIGDGFGSPAHKPSSSSSLNSIS 563
Query: 377 GENLLNESRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGL-RRQLKR 413
GENLLNESRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGL RRQLKR
Sbjct: 564 GENLLNESRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 617
BLAST of CmaCh01G012180 vs. NCBI nr
Match:
KAG7037416.1 (hypothetical protein SDJN02_01042 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 704.5 bits (1817), Expect = 5.3e-199
Identity = 374/414 (90.34%), Postives = 382/414 (92.27%), Query Frame = 0
Query: 17 GSDHQNEVEDVCYVENNLRRLRSVIVVVGEEDKLETFDGNERQENVTHQPDHDHPSFGDM 76
GSDHQNEVEDVCYVENN RRLRSVIVVVGEEDKLETFDGNE QENVTHQPDHDHPSFGD+
Sbjct: 186 GSDHQNEVEDVCYVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDI 245
Query: 77 DRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN 136
+RNDGMSNRELDNLISEEAPVIITDNRNSIVVK+DGVQNEGSNNNHGGSTHDHPLYERKN
Sbjct: 246 NRNDGMSNRELDNLISEEAPVIITDNRNSIVVKEDGVQNEGSNNNHGGSTHDHPLYERKN 305
Query: 137 GCSVNTDDTNYIDLESILRQRALENLRKYKRVLPRNVETPANCEVDKSNDAKQLDSPVSK 196
GCS NT+DTN IDLESILRQRALENLRKYKRVLPRNVETP+NCEVD SNDAKQLDSPVSK
Sbjct: 306 GCSGNTNDTNCIDLESILRQRALENLRKYKRVLPRNVETPSNCEVDNSNDAKQLDSPVSK 365
Query: 197 SVHVTSPRDEAGINGNRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVCSSQRLG 256
S HVTSPRDEAGI+GNRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPV SSQRLG
Sbjct: 366 SAHVTSPRDEAGIDGNRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQRLG 425
Query: 257 KISNGSNDMNELKQHISSVDQEVVNDRICQKADADICPTTNRSNL--------------- 316
KISNGSNDMNELK+HISSVDQEVVND IC ADADICPTTNRSNL
Sbjct: 426 KISNGSNDMNELKKHISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVDSLT 485
Query: 317 --ASASQEPIQTKPSKSDMCDDETAQTQTQMRNNDVQNIGDGFGSPPHKPSSSSSVNSIS 376
ASASQE IQTKPSKSDM DDETAQTQTQMRNNDVQNIGDGFGS HKPSSSSS+NSIS
Sbjct: 486 EQASASQESIQTKPSKSDMGDDETAQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSIS 545
Query: 377 GENLLNESRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGL-RRQLKR 413
GENLLNESRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGL RRQLKR
Sbjct: 546 GENLLNESRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 599
BLAST of CmaCh01G012180 vs. NCBI nr
Match:
XP_022941379.1 (pre-mRNA-splicing factor CWC22 homolog isoform X1 [Cucurbita moschata])
HSP 1 Score: 697.2 bits (1798), Expect = 8.5e-197
Identity = 372/414 (89.86%), Postives = 379/414 (91.55%), Query Frame = 0
Query: 17 GSDHQNEVEDVCYVENNLRRLRSVIVVVGEEDKLETFDGNERQENVTHQPDHDHPSFGDM 76
GSDHQNEVE+VCYVENN RRLRSVIVVVGEEDKLETFDGNE QENVTHQPDHDHPSFGD+
Sbjct: 202 GSDHQNEVENVCYVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDI 261
Query: 77 DRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN 136
+RNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN
Sbjct: 262 NRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN 321
Query: 137 GCSVNTDDTNYIDLESILRQRALENLRKYKRVLPRNVETPANCEVDKSNDAKQLDSPVSK 196
GCSVNTDDTN IDLESILRQRALENLRKYKRVLPRNVETPAN EVD SNDAKQLDSPVSK
Sbjct: 322 GCSVNTDDTNCIDLESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSPVSK 381
Query: 197 SVHVTSPRDEAGINGNRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVCSSQRLG 256
VHVTSPRDEAGING+RFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPV SSQ LG
Sbjct: 382 LVHVTSPRDEAGINGHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQHLG 441
Query: 257 KISNGSNDMNELKQHISSVDQEVVNDRICQKADADICPTTNRSNL--------------- 316
KISNGSNDMNELKQHISSVDQEVVND IC ADADICPTTNRSNL
Sbjct: 442 KISNGSNDMNELKQHISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVDSLT 501
Query: 317 --ASASQEPIQTKPSKSDMCDDETAQTQTQMRNNDVQNIGDGFGSPPHKPSSSSSVNSIS 376
ASASQE IQTKPSKSDM D ET QTQTQMRNNDVQNIGDGFGS HKPSSSSS+NSIS
Sbjct: 502 EQASASQESIQTKPSKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSIS 561
Query: 377 GENLLNESRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGL-RRQLKR 413
GE+LLN+SRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGL RRQLKR
Sbjct: 562 GESLLNDSRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 615
BLAST of CmaCh01G012180 vs. NCBI nr
Match:
XP_022941380.1 (pre-mRNA-splicing factor CWC22 homolog isoform X2 [Cucurbita moschata])
HSP 1 Score: 697.2 bits (1798), Expect = 8.5e-197
Identity = 372/414 (89.86%), Postives = 379/414 (91.55%), Query Frame = 0
Query: 17 GSDHQNEVEDVCYVENNLRRLRSVIVVVGEEDKLETFDGNERQENVTHQPDHDHPSFGDM 76
GSDHQNEVE+VCYVENN RRLRSVIVVVGEEDKLETFDGNE QENVTHQPDHDHPSFGD+
Sbjct: 184 GSDHQNEVENVCYVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDI 243
Query: 77 DRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN 136
+RNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN
Sbjct: 244 NRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN 303
Query: 137 GCSVNTDDTNYIDLESILRQRALENLRKYKRVLPRNVETPANCEVDKSNDAKQLDSPVSK 196
GCSVNTDDTN IDLESILRQRALENLRKYKRVLPRNVETPAN EVD SNDAKQLDSPVSK
Sbjct: 304 GCSVNTDDTNCIDLESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSPVSK 363
Query: 197 SVHVTSPRDEAGINGNRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVCSSQRLG 256
VHVTSPRDEAGING+RFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPV SSQ LG
Sbjct: 364 LVHVTSPRDEAGINGHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQHLG 423
Query: 257 KISNGSNDMNELKQHISSVDQEVVNDRICQKADADICPTTNRSNL--------------- 316
KISNGSNDMNELKQHISSVDQEVVND IC ADADICPTTNRSNL
Sbjct: 424 KISNGSNDMNELKQHISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVDSLT 483
Query: 317 --ASASQEPIQTKPSKSDMCDDETAQTQTQMRNNDVQNIGDGFGSPPHKPSSSSSVNSIS 376
ASASQE IQTKPSKSDM D ET QTQTQMRNNDVQNIGDGFGS HKPSSSSS+NSIS
Sbjct: 484 EQASASQESIQTKPSKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSIS 543
Query: 377 GENLLNESRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGL-RRQLKR 413
GE+LLN+SRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGL RRQLKR
Sbjct: 544 GESLLNDSRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 597
BLAST of CmaCh01G012180 vs. NCBI nr
Match:
XP_023525532.1 (pre-mRNA-splicing factor CWC22 homolog isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 623.2 bits (1606), Expect = 1.6e-174
Identity = 340/397 (85.64%), Postives = 349/397 (87.91%), Query Frame = 0
Query: 17 GSDHQNEVEDVCYVENNLRRLRSVIVVVGEEDKLETFDGNERQENVTHQPDHDHPSFGDM 76
GSDHQNEVEDVCYVENN RRLRSVIV+VGEEDKLETFDGNE QENVTHQPDHDHPSFGD+
Sbjct: 204 GSDHQNEVEDVCYVENNFRRLRSVIVIVGEEDKLETFDGNELQENVTHQPDHDHPSFGDI 263
Query: 77 DRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN 136
+RNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN
Sbjct: 264 NRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKN 323
Query: 137 GCSVNTDDTNYIDLESILRQRALENLRKYKRVLPRNVETPANCEVDKSNDAKQLDSPVSK 196
GCSVNTDDTN IDLESILRQRALENLRKYKRVLPRNVETPANCEVD SNDAKQLDSPVSK
Sbjct: 324 GCSVNTDDTNCIDLESILRQRALENLRKYKRVLPRNVETPANCEVDNSNDAKQLDSPVSK 383
Query: 197 SVHVTSPRDEAGINGNRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVCSSQRLG 256
SVHVTSPRDEAGING+RFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPV SSQRL
Sbjct: 384 SVHVTSPRDEAGINGDRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQRLA 443
Query: 257 KISNGSNDMNELKQHISSVDQEVVNDRICQKADADICPTTNRSNLASASQEPIQTKPSKS 316
LK S+VD + + ASASQE IQTKPSKS
Sbjct: 444 -----------LKPE-SNVD--------------------SLTEQASASQESIQTKPSKS 503
Query: 317 DMCDDETAQTQTQMRNNDVQNIGDGFGSPPHKPSSSSSVNSISGENLLNESRHESGEGSQ 376
+M D ETAQTQTQMRNNDVQNIGDGFGSP HKPSSSSS+NSISGENLLNESRHESGEGSQ
Sbjct: 504 NMGDGETAQTQTQMRNNDVQNIGDGFGSPAHKPSSSSSLNSISGENLLNESRHESGEGSQ 563
Query: 377 FEQKTMSVKRGGEMVQVNYKVYIPKRAPGL-RRQLKR 413
FEQKTMSVKRGGEMVQVNYKVYIPKRAPGL RRQLKR
Sbjct: 564 FEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 568
BLAST of CmaCh01G012180 vs. TAIR 10
Match:
AT5G53930.1 (unknown protein; LOCATED IN: chloroplast; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 53.5 bits (127), Expect = 4.6e-07
Identity = 76/278 (27.34%), Postives = 125/278 (44.96%), Query Frame = 0
Query: 149 DLESILRQRALENLRKYKRVLPRNVETPANCEVDKSNDAKQLDSPVSKSVHVTSPRDEAG 208
DLE+IL++RALENL++++ V KS AK+ S VS+ + ++
Sbjct: 276 DLEAILKKRALENLKRFRGV------------TQKSGIAKKEVSSVSEGEPMQIESEKVE 335
Query: 209 INGNRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVCSSQRLGKISNGSNDMNEL 268
+ Q ++ S +EN K ++ + T +SQ+ +G ++
Sbjct: 336 SQDHDLMEQKLCDSAVSKDLENSEKILHVINVKESGTALANSASQQ--DQQSGDTAKVKV 395
Query: 269 KQHISSVDQEVVNDRICQKADADICPTTNRSNLASAS-QEPIQTKPSKSDMCDDETAQTQ 328
+SS C + P ++ +L AS +E ++ ++++ D T
Sbjct: 396 SSGLSS----------CTTKRKLVRPVLSKDSLNLASKKEASGSQDAEAESIDGSTVDKN 455
Query: 329 TQMRNNDVQNIGDGFGSPPHKPSSSSSVNSIS------------GENLLNESRHESGEGS 388
+ +G P K SS+ + S S G ++ E+ + S
Sbjct: 456 CLESTLALVTKNEGEHIEPTKVSSTLNAESSSHADTEEVDEVKGGSQSEQKTIDETKDES 515
Query: 389 QFEQKTMSVKRGGEMVQVNYKVYIPKRAPGL-RRQLKR 413
Q+EQKTM+V RGGEMVQV+YKVYIPK+A L RR+L R
Sbjct: 516 QYEQKTMTVMRGGEMVQVSYKVYIPKKASSLGRRKLNR 529
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1FN60 | 4.1e-197 | 89.86 | pre-mRNA-splicing factor CWC22 homolog isoform X1 OS=Cucurbita moschata OX=3662 ... | [more] |
A0A6J1FTH5 | 4.1e-197 | 89.86 | pre-mRNA-splicing factor CWC22 homolog isoform X2 OS=Cucurbita moschata OX=3662 ... | [more] |
A0A6J1FKY7 | 4.3e-170 | 84.13 | pre-mRNA-splicing factor CWC22 homolog isoform X3 OS=Cucurbita moschata OX=3662 ... | [more] |
A0A6J1CDR0 | 2.9e-142 | 71.09 | uncharacterized protein LOC111010601 OS=Momordica charantia OX=3673 GN=LOC111010... | [more] |
A0A6J1F6D1 | 4.6e-140 | 69.19 | uncharacterized protein LOC111442542 isoform X1 OS=Cucurbita moschata OX=3662 GN... | [more] |
Match Name | E-value | Identity | Description | |
XP_023525531.1 | 2.3e-202 | 91.30 | uncharacterized protein LOC111789118 isoform X1 [Cucurbita pepo subsp. pepo] | [more] |
KAG7037416.1 | 5.3e-199 | 90.34 | hypothetical protein SDJN02_01042 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
XP_022941379.1 | 8.5e-197 | 89.86 | pre-mRNA-splicing factor CWC22 homolog isoform X1 [Cucurbita moschata] | [more] |
XP_022941380.1 | 8.5e-197 | 89.86 | pre-mRNA-splicing factor CWC22 homolog isoform X2 [Cucurbita moschata] | [more] |
XP_023525532.1 | 1.6e-174 | 85.64 | pre-mRNA-splicing factor CWC22 homolog isoform X2 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
AT5G53930.1 | 4.6e-07 | 27.34 | unknown protein; LOCATED IN: chloroplast; Has 1807 Blast hits to 1807 proteins i... | [more] |