CmaCh01G011090 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G011090
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	Cma_Chr01: 8122591 .. 8127489 (+)
RNA-Seq Expression	CmaCh01G011090
Synteny	CmaCh01G011090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCGAATCTTGTTATCATCTTCTTCCTTTCAATACTCTAATCCATATGATCACCATCAAACTTTCTTCCTCCAATTATCTTCTTTGGAAAAGCCAACTTCTCCCTCTTCTTGAGAGTCAAGACATGCTGGGCTATGTCGATGGAACTATGGTTCCACCACCTCGCTTTGAACCAGAAACCTCCTCAACATTCAACCCCAAATATTTGGCATGGAGAGCAGCCGATCAACGACTTCTCTGTCTCCTGCTCTCCTCTCTCACTGAGGAAGCCATGGCTGTTGTCGTTGGTCTCTCTACTGCACGTGATGTTTGGCTTGCGTTGGAAACTACGTACAGCCATCAGTCAAAAGCTCGTGAACTGAGACTCAAGGATGACTTGCAGTTGATGAAACGTGGCACAAAACCTGTTGCTGAGTATGCCCGTGCCTTCAAAAAAATTTGTGACCAACTTCATGCCATTGGCAGACCCGTCGAGGACATTGATAAAGTGCATTGGTTCCTTCGTGGACTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTATTGATGATTATTCTCGATTCACTTGGTTTTACCCTTTAAAATTTAAATCTGATTTTTTTGATATTTTTCTTCAATTTCAAAAATTTGTGGAAAATTAATATTCTTCTCGTATCAAGGTATTTCAAAGCGATGGTGGTACCGAATTTACTAGTACTTGTTTCAAAACTCATTTACGTAATTCTGGCATCCACCATCAACTCTCTTGTCCATATACACCTGCTCAAAATGGTCGTGTTGAGAGAAAACATCGTCATGTGACTGAGACTGGCTTGGCCCTTCTCTTTCACTCTCATCTTTCTCCTCGTTTTTGGGTTGACGCCTTCAGCACTGCAGCTTATATTATCAACCGGTTGCCTACTCCACTTCTTGGAGGTAAGTCACCCTTTGAACTCCTTTATGGCTACACTCCACATTATGACAATTTTCATCCCTTTGGTTGTCGTGTTTATCCTTATTTGCGTGATTATATGCCTAACAAGCTTTCTCCCCGCAGCATTCCTTGTATTTTTTTGGGTTATAGTCCTGTTCATAAAGGGTTCCGCTGTCTTGATCCCGCCACCACTAAGCTATATATCACCTGCCATGCTCAATTTGATGAAACTCACTTTCCTGCTATCCCTAGCTCCCAAGCCCAACCTCTTTCCACTATTCCTATTTCAAATTTCTTGGAACCACATCTTCATCATATTGATTCATCCCCCCCTACCACTTCATCACCGCACATTCCTCAATCCAGTTCATCCCCGTGTGATATTTGTTCTGACCTTGTAGATGAGTCTGTGCAGGTTGATACTTCTCTTGCAGGTTCCACTTTGTCACCCTCGACTTCTAATTCAACCTCTATTGAACCTCCTGTTGATTTCTCTTCTTTGAGCACTCATCCTATGATCACACGCGCCAAAGCTGGTATATTCAAGACTCGTCATCCAGCAAATCTTGGTATGTTGGGCTCATCTGGACTTCTCTCTGCTCTTCTTGCATCCACTGAGCCAAAAGGATTCAAATCTGCGGCTAAGAATCCTGCTTGGGTGGCTGCCATGGATGAAGAAATTCGAGCGTTACAACAAAATGATACTTGGACTTTGGTTCCTCGCCCTGCCAACACCAACATCGTGGGCTCTAAATGGGTGTTTCGTATTAAATATTTGCCCGATGGATCCGTCGAGCGTTTCAAGGCTCGTCTCGTTGCCAAAGGTTATACTCAGGTTCCTGGTCTTGACTACACTGACACTTTCAGTCCAGTTGTCAAAGCTACCACTGTCCGTGTTGTGCTTTCTATTGCAGTCACAAATAAATGGCCTCTTCGACAACTTGATGTCAAGAATGCTTTTCTCAATGGAACGCTTATTGAACGTGTTCATATGGAACAACCTCCTGGGTATGTTGATCCTCGATTTCCAAAGCATGTTTGTCTATTAAAGAAAGCTCTCTATGGCTTAAAGCAAGCTCCTCGTGCTTGGTTTCAGCGTTTTAGCTCATTTCTTCTCACACTTGGGTTTTCTTGTAGTCGCGCTGACACGTCCCTTTTTGTCTTTCATCAGCAATCTAACCTTATCTATTTGCTTCTTTATGTTGATGACATTATTGTTACCGGCAACAACTCATCTCTTATTAACAGCTTTACTCGCAAGCTTCATTCTGAGTTTGCTACCAAAGATTTGGGTTCTCTCAGTTACTTTCTTGGTCTTGAAGCTTCACCCACTCCTGATGGTCTCTTTATCAGTCAGTTAAAATATGCTCGAGATATTCTTACTCGTGCTCAGTTGCTCGATAGCAAACCAGTTCACACTCCCATGGTTGTTTCTCAACACCTGACTGCTGATGGTTCTCCTTTCTCTGATCCTACTCTCTACAGATCTCTTGTTGGCGCCCTTCAGTACTTGACTATCACGCGTCCAGATATTGCCTATGCTGTCAATTCTGTCAGTCAATTCTTGCATGCCCCTACTGCAGATCACTTTCTTGCTGTCAAACGTATTCTTCGCTATGTCAAAGGAACACTCCACTTTGGTCTTATCTTTCGTCCATCCACTGTTCCTAGTACGCTAGTCGCTTATTCGGATGCTGACTGGGCTGGTTGTCCCGATACTCGTCGTTCTACATCCGGCTATTCTATTTATCTTGGTAACAATCTCATTTCTTGGAGTGCCAAAAAGCAACCTACTGTATCACGCTCCAGCTGTGAATCTGAGTATCGTGCTCTTGCCACAACTGCTGCTGAACTTCTTTGGGTTACGCATCTTTTGCATGACCTCAAGGTCCCTATTTCACAGCAGCCCTTACTCTTATGTGACAACAAAAGTGCTATTTTTTTGAGCTCTAATCCTGTTTCTCACAAGCGGGCCAAGCATGTTGAACTAGATTATCATTTCCTTCGAGAACTTGTTATCGCTGGCAAACTTCGTACACAATATGTACCCTCTCATCTCCAAGTTGCTGACATCTTCACAAAGAGTATTTCTCGACCTCTCTTTGAATTTTTCAGATCCAAGCTTCATGTTCGTTCAAATCCGACGCTCAGCTTGCGGGGGGGTGTTAAGGATAGTTGACCGTTCATTAAGGCAAATATCTAGATATTTGCCTTACATTACGGGTTACCATATTTTCTCTTTTACTAAATGCAAATATATTGTATTCATTTATTATTCTTTCCTTTTATCGCTATTTCCTTATTATTTGTAATTTACCTTATTTCTGTATTCTGTAAATGATTATAAATAAGAGAACTCTCACCACCATTTGGGCGTGGTGGATTAATCAAACATTAACAGGTTGACTTGCATAGAACACATATAGGTTGACTTGTATTTGAAACGACGAGTTCAGACTAGTTCAAGTGTAATTTAGCAACTCTAGCTTAACTTACTGTATGGTTGGATGAATCGAATGATATACGAATATGTCGTATTTTATGTTATGCATGTGACAACAATAAAAAGATTGAATGAACATGACATGGAAAGTATGAAAAACATGTACACTAATGTTGTACTTTCTATCACGGTCATACTTGTTTAGAGCGTGTTGCCTACATGTCTATGCTACGTCGAACCCTTTACTTAATTTCAAGTTGTATTGTCTTATTATTGTTTTGTTTTTTTTGTAAAACTACTTGGTGAAGTGATGTCTAGGCATGTTAGACGTAAATCACCTCAAAACGTATTATAAGGGGAGTGACTAGTCGTTAACTCCTCCCCCTGATTTTGTATAACTGTTCGGCAAAATCACGCCTAGCTCTAGCATACTTTAATCGTCATCATTCATGACTTTTCCATAATGACTTTTCCATAAATTAATTAATTTTTAAAACAATAAATTAATTAATTTTTTATTTTTTATTTTTTATTTTTAAGATAAAACAATAAATTAATTTTATAAGACAAAGAAGTTGTTGGAGACTTAATGACTTTTCCATAATTCTCGAGCTAACATCGTGTATTCGTCGTCGTCATCATTCATGTAAGGATATTATTAATATTAATTTGTTTATAAAATTGTTAAATTACAGATTAAGTCCCTGAAATTTCAATATTACAAATTTAGTCGCTAAATTGTGAGACCAAAATATGTTTTATAAGGATATAAAAATCTCGGGTAACGGTGGGTGGGCTTAAACGGGTCCATATAAAATTAAAAAAAATTATATCTAATTGATCCATTAAAAAATTATTAAATACTTATGATGAAATAACAAAAATAGATAAATAAAAATTTAATTTAAATGTAAAAAAAGAAAAAGAGAAAGAAAAAAATAGTATTGGACCTAAGCCCATTTTTATTCGGCCCATTACATAGTTGACCCGACCCGATTACTTCACATCTCCAGATTCCGATTAATTTCCGATCTATTTTTTGTTCTACAGATTTCTAAGATCCTTTTATTGTTCCCACAATTCTTCATCTTCTTTCTTGGTATCGAAACGAATCTTCTTTTTCTTTTTTGTTCAGATTGTTCTGTTCGCCTTTTCATTTAATTCAAATTGCATCTTGATTTTCGATTTCTTCTTTTGATTGCAGAGGTTTTGATCTTTTGA

mRNA sequence

ATGGCTTCCGAATCTTGTTATCATCTTCTTCCTTTCAATACTCTAATCCATATGATCACCATCAAACTTTCTTCCTCCAATTATCTTCTTTGGAAAAGCCAACTTCTCCCTCTTCTTGAGAGTCAAGACATGCTGGGCTATGTCGATGGAACTATGGTTCCACCACCTCGCTTTGAACCAGAAACCTCCTCAACATTCAACCCCAAATATTTGGCATGGAGAGCAGCCGATCAACGACTTCTCTGTCTCCTGCTCTCCTCTCTCACTGAGGAAGCCATGGCTGTTGTCGTTGGTCTCTCTACTGCACGTGATGTTTGGCTTGCGTTGGAAACTACGTACAGCCATCAGTCAAAAGCTCGTGAACTGAGACTCAAGGATGACTTGCAGTTGATGAAACGTGGCACAAAACCTGTTGCTGAGTATGCCCGTGCCTTCAAAAAAATTTGTGACCAACTTCATGCCATTGGCAGACCCGTCGAGGACATTGATAAAGTGCATTGCACTGCAGCTTATATTATCAACCGGTTGCCTACTCCACTTCTTGGAGGTAAGTCACCCTTTGAACTCCTTTATGGCTACACTCCACATTATGACAATTTTCATCCCTTTGGTTGTCGTGTTTATCCTTATTTGCGTGATTATATGCCTAACAAGCTTTCTCCCCGCAGCATTCCTTGTATTTTTTTGGGTTATAGTCCTGTTCATAAAGGGTTCCGCTGTCTTGATCCCGCCACCACTAAGCTATATATCACCTGCCATGCTCAATTTGATGAAACTCACTTTCCTGCTATCCCTAGCTCCCAAGCCCAACCTCTTTCCACTATTCCTATTTCAAATTTCTTGGAACCACATCTTCATCATATTGATTCATCCCCCCCTACCACTTCATCACCGCACATTCCTCAATCCAGTTCATCCCCGTGTGATATTTGTTCTGACCTTGTAGATGAGTCTGTGCAGGTTGATACTTCTCTTGCAGGTTCCACTTTGTCACCCTCGACTTCTAATTCAACCTCTATTGAACCTCCTGTTGATTTCTCTTCTTTGAGCACTCATCCTATGATCACACGCGCCAAAGCTGGTATATTCAAGACTCGTCATCCAGCAAATCTTGGTATGTTGGGCTCATCTGGACTTCTCTCTGCTCTTCTTGCATCCACTGAGCCAAAAGGATTCAAATCTGCGGCTAAGAATCCTGCTTGGGTGGCTGCCATGGATGAAGAAATTCGAGCGTTACAACAAAATGATACTTGGACTTTGGTTCCTCGCCCTGCCAACACCAACATCGTGGGCTCTAAATGGGTGTTTCGTATTAAATATTTGCCCGATGGATCCGTCGAGCGTTTCAAGGCTCGTCTCGTTGCCAAAGGTTATACTCAGGTTCCTGGTCTTGACTACACTGACACTTTCAGTCCAGTTGTCAAAGCTACCACTGTCCGTGTTGTGCTTTCTATTGCAGTCACAAATAAATGGCCTCTTCGACAACTTGATGTCAAGAATGCTTTTCTCAATGGAACGCTTATTGAACGTGTTCATATGGAACAACCTCCTGGGTATGTTGATCCTCGATTTCCAAAGCATGTTTGTCTATTAAAGAAAGCTCTCTATGGCTTAAAGCAAGCTCCTCGTGCTTGGTTTCAGCGTTTTAGCTCATTTCTTCTCACACTTGGGTTTTCTTGTAGTCGCGCTGACACGTCCCTTTTTGTCTTTCATCAGCAATCTAACCTTATCTATTTGCTTCTTTATGTTGATGACATTATTGTTACCGGCAACAACTCATCTCTTATTAACAGCTTTACTCGCAAGCTTCATTCTGAGTTTGCTACCAAAGATTTGGGTTCTCTCAGTTACTTTCTTGGTCTTGAAGCTTCACCCACTCCTGATGGTCTCTTTATCAGTCAGTTAAAATATGCTCGAGATATTCTTACTCGTGCTCAGTTGCTCGATAGCAAACCAGTTCACACTCCCATGGTTGTTTCTCAACACCTGACTGCTGATGGTTCTCCTTTCTCTGATCCTACTCTCTACAGATCTCTTGTTGGCGCCCTTCAGTACTTGACTATCACGCGTCCAGATATTGCCTATGCTGTCAATTCTGTCAGTCAATTCTTGCATGCCCCTACTGCAGATCACTTTCTTGCTGTCAAACGTATTCTTCGCTATGTCAAAGGAACACTCCACTTTGGTCTTATCTTTCGTCCATCCACTGTTCCTAGTACGCTAGTCGCTTATTCGGATGCTGACTGGGCTGGTTGTCCCGATACTCGTCGTTCTACATCCGGCTATTCTATTTATCTTGGTAACAATCTCATTTCTTGGAGTGCCAAAAAGCAACCTACTGTATCACGCTCCAGCTGTGAATCTGAGTATCGTGCTCTTGCCACAACTGCTGCTGAACTTCTTTGGGTTACGCATCTTTTGCATGACCTCAAGATTTCTAAGATCCTTTTATTGTTCCCACAATTCTTCATCTTCTTTCTTGAGGTTTTGATCTTTTGA

Coding sequence (CDS)

ATGGCTTCCGAATCTTGTTATCATCTTCTTCCTTTCAATACTCTAATCCATATGATCACCATCAAACTTTCTTCCTCCAATTATCTTCTTTGGAAAAGCCAACTTCTCCCTCTTCTTGAGAGTCAAGACATGCTGGGCTATGTCGATGGAACTATGGTTCCACCACCTCGCTTTGAACCAGAAACCTCCTCAACATTCAACCCCAAATATTTGGCATGGAGAGCAGCCGATCAACGACTTCTCTGTCTCCTGCTCTCCTCTCTCACTGAGGAAGCCATGGCTGTTGTCGTTGGTCTCTCTACTGCACGTGATGTTTGGCTTGCGTTGGAAACTACGTACAGCCATCAGTCAAAAGCTCGTGAACTGAGACTCAAGGATGACTTGCAGTTGATGAAACGTGGCACAAAACCTGTTGCTGAGTATGCCCGTGCCTTCAAAAAAATTTGTGACCAACTTCATGCCATTGGCAGACCCGTCGAGGACATTGATAAAGTGCATTGCACTGCAGCTTATATTATCAACCGGTTGCCTACTCCACTTCTTGGAGGTAAGTCACCCTTTGAACTCCTTTATGGCTACACTCCACATTATGACAATTTTCATCCCTTTGGTTGTCGTGTTTATCCTTATTTGCGTGATTATATGCCTAACAAGCTTTCTCCCCGCAGCATTCCTTGTATTTTTTTGGGTTATAGTCCTGTTCATAAAGGGTTCCGCTGTCTTGATCCCGCCACCACTAAGCTATATATCACCTGCCATGCTCAATTTGATGAAACTCACTTTCCTGCTATCCCTAGCTCCCAAGCCCAACCTCTTTCCACTATTCCTATTTCAAATTTCTTGGAACCACATCTTCATCATATTGATTCATCCCCCCCTACCACTTCATCACCGCACATTCCTCAATCCAGTTCATCCCCGTGTGATATTTGTTCTGACCTTGTAGATGAGTCTGTGCAGGTTGATACTTCTCTTGCAGGTTCCACTTTGTCACCCTCGACTTCTAATTCAACCTCTATTGAACCTCCTGTTGATTTCTCTTCTTTGAGCACTCATCCTATGATCACACGCGCCAAAGCTGGTATATTCAAGACTCGTCATCCAGCAAATCTTGGTATGTTGGGCTCATCTGGACTTCTCTCTGCTCTTCTTGCATCCACTGAGCCAAAAGGATTCAAATCTGCGGCTAAGAATCCTGCTTGGGTGGCTGCCATGGATGAAGAAATTCGAGCGTTACAACAAAATGATACTTGGACTTTGGTTCCTCGCCCTGCCAACACCAACATCGTGGGCTCTAAATGGGTGTTTCGTATTAAATATTTGCCCGATGGATCCGTCGAGCGTTTCAAGGCTCGTCTCGTTGCCAAAGGTTATACTCAGGTTCCTGGTCTTGACTACACTGACACTTTCAGTCCAGTTGTCAAAGCTACCACTGTCCGTGTTGTGCTTTCTATTGCAGTCACAAATAAATGGCCTCTTCGACAACTTGATGTCAAGAATGCTTTTCTCAATGGAACGCTTATTGAACGTGTTCATATGGAACAACCTCCTGGGTATGTTGATCCTCGATTTCCAAAGCATGTTTGTCTATTAAAGAAAGCTCTCTATGGCTTAAAGCAAGCTCCTCGTGCTTGGTTTCAGCGTTTTAGCTCATTTCTTCTCACACTTGGGTTTTCTTGTAGTCGCGCTGACACGTCCCTTTTTGTCTTTCATCAGCAATCTAACCTTATCTATTTGCTTCTTTATGTTGATGACATTATTGTTACCGGCAACAACTCATCTCTTATTAACAGCTTTACTCGCAAGCTTCATTCTGAGTTTGCTACCAAAGATTTGGGTTCTCTCAGTTACTTTCTTGGTCTTGAAGCTTCACCCACTCCTGATGGTCTCTTTATCAGTCAGTTAAAATATGCTCGAGATATTCTTACTCGTGCTCAGTTGCTCGATAGCAAACCAGTTCACACTCCCATGGTTGTTTCTCAACACCTGACTGCTGATGGTTCTCCTTTCTCTGATCCTACTCTCTACAGATCTCTTGTTGGCGCCCTTCAGTACTTGACTATCACGCGTCCAGATATTGCCTATGCTGTCAATTCTGTCAGTCAATTCTTGCATGCCCCTACTGCAGATCACTTTCTTGCTGTCAAACGTATTCTTCGCTATGTCAAAGGAACACTCCACTTTGGTCTTATCTTTCGTCCATCCACTGTTCCTAGTACGCTAGTCGCTTATTCGGATGCTGACTGGGCTGGTTGTCCCGATACTCGTCGTTCTACATCCGGCTATTCTATTTATCTTGGTAACAATCTCATTTCTTGGAGTGCCAAAAAGCAACCTACTGTATCACGCTCCAGCTGTGAATCTGAGTATCGTGCTCTTGCCACAACTGCTGCTGAACTTCTTTGGGTTACGCATCTTTTGCATGACCTCAAGATTTCTAAGATCCTTTTATTGTTCCCACAATTCTTCATCTTCTTTCTTGAGGTTTTGATCTTTTGA

Protein sequence

MASESCYHLLPFNTLIHMITIKLSSSNYLLWKSQLLPLLESQDMLGYVDGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTYSHQSKARELRLKDDLQLMKRGTKPVAEYARAFKKICDQLHAIGRPVEDIDKVHCTAAYIINRLPTPLLGGKSPFELLYGYTPHYDNFHPFGCRVYPYLRDYMPNKLSPRSIPCIFLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIPISNFLEPHLHHIDSSPPTTSSPHIPQSSSSPCDICSDLVDESVQVDTSLAGSTLSPSTSNSTSIEPPVDFSSLSTHPMITRAKAGIFKTRHPANLGMLGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIRALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYVDPRFPKHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQSNLIYLLLYVDDIIVTGNNSSLINSFTRKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLIFRPSTVPSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLISWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKISKILLLFPQFFIFFLEVLIF

Homology

[Close]

BLAST of CmaCh01G011090 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 545.8 bits (1405), Expect = 8.4e-154
Identity = 314/733 (42.84%), Postives = 423/733 (57.71%), Query Frame = 0


Query: 169  AAYIINRLPTPLLGGKSPFELLYGYTPHYDNFHPFGCRVYPYLRDYMPNKLSPRSIPCIF 228
            A Y+INRLPTPLL  +SPF+ L+G +P+YD    FGC  YP+LR Y  +KL  +S  C+F
Sbjct: 657  AVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVF 716

Query: 229  LGYSPVHKGFRCLDPATTKLYITCHAQFDETHFP-------------------------- 288
            LGYS     + CL   T++LYI+ H +FDE  FP                          
Sbjct: 717  LGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHT 776

Query: 289  ---------------------AIPSSQAQPL--STIPISNFLEPHLHHIDSSP-PTTSSP 348
                                   PSS + P   S +  SN          SSP PT    
Sbjct: 777  TLPTRTPVLPAPSCSDPHHAATPPSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQ 836

Query: 349  HIPQ------------------SSSSPCDICSDLVDESVQVDTSLAGSTLSPSTSNSTS- 408
            + PQ                  S ++P +     + +S+      + S+ SP+TS S+S 
Sbjct: 837  NGPQPTTQPTQTQTQTHSSQNTSQNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSS 896

Query: 409  ---------IEPPVDFSS---------LSTHPMITRAKAGIFKTRHPANLGMLGSSGLLS 468
                     I PP   +          L+TH M TRAKAGI K     +L +        
Sbjct: 897  TSPTPPSILIHPPPPLAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPKYSLAV-------- 956

Query: 469  ALLASTEPKGFKSAAKNPAWVAAMDEEIRALQQNDTWTLV-PRPANTNIVGSKWVFRIKY 528
            +L A +EP+    A K+  W  AM  EI A   N TW LV P P++  IVG +W+F  KY
Sbjct: 957  SLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKY 1016

Query: 529  LPDGSVERFKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKN 588
              DGS+ R+KARLVAKGY Q PGLDY +TFSPV+K+T++R+VL +AV   WP+RQLDV N
Sbjct: 1017 NSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNN 1076

Query: 589  AFLNGTLIERVHMEQPPGYVDPRFPKHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSC 648
            AFL GTL + V+M QPPG++D   P +VC L+KALYGLKQAPRAW+    ++LLT+GF  
Sbjct: 1077 AFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVN 1136

Query: 649  SRADTSLFVFHQQSNLIYLLLYVDDIIVTGNNSSLINSFTRKLHSEFATKDLGSLSYFLG 708
            S +DTSLFV  +  +++Y+L+YVDDI++TGN+ +L+++    L   F+ KD   L YFLG
Sbjct: 1137 SVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLG 1196

Query: 709  LEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTA-DGSPFSDPTLYRSL 768
            +EA   P GL +SQ +Y  D+L R  ++ +KPV TPM  S  L+   G+  +DPT YR +
Sbjct: 1197 IEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGI 1256

Query: 769  VGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLIFRPSTVPS 813
            VG+LQYL  TRPDI+YAVN +SQF+H PT +H  A+KRILRY+ GT + G+  +     S
Sbjct: 1257 VGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLS 1316

HSP 2 Score: 82.8 bits (203), Expect = 2.0e-14
Identity = 40/145 (27.59%), Postives = 76/145 (52.41%), Query Frame = 0


Query: 22  KLSSSNYLLWKSQLLPLLESQDMLGYVDG-TMVPPPRFEPETSSTFNPKYLAWRAADQRL 81
           KL+S+NYL+W  Q+  L +  ++ G++DG T +PP     + +   NP Y  W+  D+ +
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLI 84

Query: 82  LCLLLSSLTEEAMAVVVGLSTARDVWLALETTYSHQSKARELRLKDDLQLMKRGTKPVAE 141
              +L +++      V   +TA  +W  L   Y++ S     +L+  L+   +GTK + +
Sbjct: 85  YSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDD 144

Query: 142 YARAFKKICDQLHAIGRPVEDIDKV 166
           Y +      DQL  +G+P++  ++V
Sbjct: 145 YMQGLVTRFDQLALLGKPMDHDEQV 169

[Close]

BLAST of CmaCh01G011090 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 530.0 bits (1364), Expect = 4.8e-149
Identity = 313/737 (42.47%), Postives = 419/737 (56.85%), Query Frame = 0


Query: 169  AAYIINRLPTPLLGGKSPFELLYGYTPHYDNFHPFGCRVYPYLRDYMPNKLSPRSIPCIF 228
            A Y+INRLPTPLL  +SPF+ L+G  P+Y+    FGC  YP+LR Y  +KL  +S  C F
Sbjct: 636  AVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAF 695

Query: 229  LGYSPVHKGFRCLDPATTKLYITCHAQFDETHFP------AIPSSQAQ------------ 288
            +GYS     + CL   T +LY + H QFDE  FP       + +SQ Q            
Sbjct: 696  MGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHT 755

Query: 289  PLSTIPISNFLEPHL-HHIDSSP-------------------------------PT---- 348
             L T P+     P L  H+D+SP                               PT    
Sbjct: 756  TLPTTPLVLPAPPCLGPHLDTSPRPPSSPSPLCTTQVSSSNLPSSSISSPSSSEPTAPSH 815

Query: 349  -----TSSPHIPQSSSSPCDICSDLVDESVQVD----------------------TSLAG 408
                 T+ PH  Q+S+S   I ++    S   +                      TS++ 
Sbjct: 816  NGPQPTAQPHQTQNSNSNSPILNNPNPNSPSPNSPNQNSPLPQSPISSPHIPTPSTSISE 875

Query: 409  STLSPSTSNSTSIEPPV----------DFSSLSTHPMITRAKAGIFKTRHPANLGMLGSS 468
                 S+S ST   PPV            + ++TH M TRAK GI K     +       
Sbjct: 876  PNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQKYSYA----- 935

Query: 469  GLLSALLASTEPKGFKSAAKNPAWVAAMDEEIRALQQNDTWTLV-PRPANTNIVGSKWVF 528
               ++L A++EP+    A K+  W  AM  EI A   N TW LV P P +  IVG +W+F
Sbjct: 936  ---TSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIF 995

Query: 529  RIKYLPDGSVERFKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQL 588
              K+  DGS+ R+KARLVAKGY Q PGLDY +TFSPV+K+T++R+VL +AV   WP+RQL
Sbjct: 996  TKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQL 1055

Query: 589  DVKNAFLNGTLIERVHMEQPPGYVDPRFPKHVCLLKKALYGLKQAPRAWFQRFSSFLLTL 648
            DV NAFL GTL + V+M QPPG+VD   P +VC L+KA+YGLKQAPRAW+    ++LLT+
Sbjct: 1056 DVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTV 1115

Query: 649  GFSCSRADTSLFVFHQQSNLIYLLLYVDDIIVTGNNSSLINSFTRKLHSEFATKDLGSLS 708
            GF  S +DTSLFV  +  ++IY+L+YVDDI++TGN++ L+      L   F+ K+   L 
Sbjct: 1116 GFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLH 1175

Query: 709  YFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTA-DGSPFSDPTL 768
            YFLG+EA   P GL +SQ +Y  D+L R  +L +KPV TPM  S  LT   G+   DPT 
Sbjct: 1176 YFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTE 1235

Query: 769  YRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLIFRPS 813
            YR +VG+LQYL  TRPD++YAVN +SQ++H PT DH+ A+KR+LRY+ GT   G+  +  
Sbjct: 1236 YRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKG 1295

[Close]

BLAST of CmaCh01G011090 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 6.1e-88
Identity = 221/661 (33.43%), Postives = 333/661 (50.38%), Query Frame = 0


Query: 168  TAAYIINRLPTPLLGGKSPFELLYGYTPHYDNFHPFGCRVYPYLRDYMPNKLSPRSIPCI 227
            TA Y+INR P+  L  + P  +       Y +   FGCR + ++      KL  +SIPCI
Sbjct: 616  TACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCI 675

Query: 228  FLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIPISNFLEPHLHH 287
            F+GY     G+R  DP   K+  +    F E+      +  ++ +    I NF+      
Sbjct: 676  FIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEV-RTAADMSEKVKNGIIPNFV------ 735

Query: 288  IDSSPPTTSSPHIPQSS----SSPCDICSDLVDESVQVDTSLAGSTLSPSTSNSTSIEPP 347
              + P T+++P   +S+    S   +   +++++  Q+D  +              +E P
Sbjct: 736  --TIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGV------------EEVEHP 795

Query: 348  VDFSSLSTHPMITRAKAGIFKTRHPANLGMLGSSGLLSALLASTEPKGFKSAAKNP---A 407
                     P+    +  +   R+P+   +L S           EP+  K    +P    
Sbjct: 796  TQ-GEEQHQPLRRSERPRVESRRYPSTEYVLISD--------DREPESLKEVLSHPEKNQ 855

Query: 408  WVAAMDEEIRALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARLVAKGYTQ 467
             + AM EE+ +LQ+N T+ LV  P     +  KWVF++K   D  + R+KARLV KG+ Q
Sbjct: 856  LMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQ 915

Query: 468  VPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYV 527
              G+D+ + FSPVVK T++R +LS+A +    + QLDVK AFL+G L E ++MEQP G+ 
Sbjct: 916  KKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFE 975

Query: 528  DPRFPKHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSL-FVFHQQSNLIYL 587
                   VC L K+LYGLKQAPR W+ +F SF+ +  +  + +D  + F    ++N I L
Sbjct: 976  VAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIIL 1035

Query: 588  LLYVDDIIVTGNNSSLINSFTRKLHSEFATKDLGSLSYFLGLE--ASPTPDGLFISQLKY 647
            LLYVDD+++ G +  LI      L   F  KDLG     LG++     T   L++SQ KY
Sbjct: 1036 LLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKY 1095

Query: 648  ARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFS-------DPTLYRSLVGALQY-LTIT 707
               +L R  + ++KPV TP+     L+    P +           Y S VG+L Y +  T
Sbjct: 1096 IERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCT 1155

Query: 708  RPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLIFRPSTVPSTLVAYSDADW 767
            RPDIA+AV  VS+FL  P  +H+ AVK ILRY++GT    L F  S     L  Y+DAD 
Sbjct: 1156 RPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGS--DPILKGYTDADM 1215

Query: 768  AGCPDTRRSTSGYSIYLGNNLISWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHD 811
            AG  D R+S++GY        ISW +K Q  V+ S+ E+EY A   T  E++W+   L +
Sbjct: 1216 AGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQE 1244

[Close]

BLAST of CmaCh01G011090 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 300.8 bits (769), Expect = 4.7e-80
Identity = 212/715 (29.65%), Postives = 349/715 (48.81%), Query Frame = 0


Query: 168  TAAYIINRLPTPLL--GGKSPFELLYGYTPHYDNFHPFGCRVYPYLRDYMPNKLSPRSIP 227
            TA Y+INR+P+  L    K+P+E+ +   P+  +   FG  VY ++++    K   +S  
Sbjct: 616  TATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKN-KQGKFDDKSFK 675

Query: 228  CIFLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIPI-------- 287
             IF+GY P   GF+  D    K  +      DET+   + +S+A    T+ +        
Sbjct: 676  SIFVGYEP--NGFKLWDAVNEKFIVARDVVVDETN---MVNSRAVKFETVFLKDSKESEN 735

Query: 288  SNFLEPHLHHIDSSPPTTS----------------SPHIPQSS-----------SSPCDI 347
             NF       I +  P  S                + + P  S           S  CD 
Sbjct: 736  KNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESENKNFPNDSRKIIQTEFPNESKECDN 795

Query: 348  CSDLVDESV----------------QVDTSLAGSTLSPSTSNSTS-------IEPP---- 407
               L D                    ++ S      + S  + T+       I+ P    
Sbjct: 796  IQFLKDSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKND 855

Query: 408  -VDFSSLSTHPMITRAKAGIFKTRHPANLGMLGSSGLLSALLASTEPKGFKSAAKNPAWV 467
             ++  +  +  + T+ +    +  +  N  +L +  + + +  S +   ++      +W 
Sbjct: 856  GIEIINRRSERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRD--DKSSWE 915

Query: 468  AAMDEEIRALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARLVAKGYTQVP 527
             A++ E+ A + N+TWT+  RP N NIV S+WVF +KY   G+  R+KARLVA+G+TQ  
Sbjct: 916  EAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKY 975

Query: 528  GLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYVDP 587
             +DY +TF+PV + ++ R +LS+ +     + Q+DVK AFLNGTL E ++M  P G    
Sbjct: 976  QIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--S 1035

Query: 588  RFPKHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQ--SNLIYLL 647
                +VC L KA+YGLKQA R WF+ F   L    F  S  D  +++  +   +  IY+L
Sbjct: 1036 CNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVL 1095

Query: 648  LYVDDIIVTGNNSSLINSFTRKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARD 707
            LYVDD+++   + + +N+F R L  +F   DL  + +F+G+      D +++SQ  Y + 
Sbjct: 1096 LYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKK 1155

Query: 708  ILTRAQLLDSKPVHTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTI-TRPDIAYAVNS 767
            IL++  + +   V TP+    +     S     T  RSL+G L Y+ + TRPD+  AVN 
Sbjct: 1156 ILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNI 1215

Query: 768  VSQFLHAPTADHFLAVKRILRYVKGTLHFGLIFRPS-TVPSTLVAYSDADWAGCPDTRRS 813
            +S++     ++ +  +KR+LRY+KGT+   LIF+ +    + ++ Y D+DWAG    R+S
Sbjct: 1216 LSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKS 1275

[Close]

BLAST of CmaCh01G011090 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 2.1e-64
Identity = 123/226 (54.42%), Postives = 165/226 (73.01%), Query Frame = 0


Query: 577 IYLLLYVDDIIVTGNNSSLINSFTRKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLK 636
           +YLLLYVDDI++TG++++L+N    +L S F+ KDLG + YFLG++    P GLF+SQ K
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 637 YARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYA 696
           YA  IL  A +LD KP+ TP+ +  + +   + + DP+ +RS+VGALQYLT+TRPDI+YA
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 120

Query: 697 VNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLIFRPSTVPSTLVAYSDADWAGCPDTR 756
           VN V Q +H PT   F  +KR+LRYVKGT+  GL    ++    + A+ D+DWAGC  TR
Sbjct: 121 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNS-KLNVQAFCDSDWAGCTSTR 180

Query: 757 RSTSGYSIYLGNNLISWSAKKQPTVSRSSCESEYRALATTAAELLW 803
           RST+G+  +LG N+ISWSAK+QPTVSRSS E+EYRALA TAAEL W
Sbjct: 181 RSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of CmaCh01G011090 vs. ExPASy TrEMBL
Match: A0A438E763 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_452 PE=4 SV=1)

HSP 1 Score: 1331.6 bits (3445), Expect = 0.0e+00
Identity = 721/1116 (64.61%), Postives = 763/1116 (68.37%), Query Frame = 0


Query: 1    MASESCYHLLPFNTLIHMITIKLSSSNYLLWKSQLLPLLESQDMLGYVDGTMVPPPRFEP 60
            MASES  HLLPFNTLIHMI IKLSSSNYLLWKSQLLPLLESQD+L YVDGT+VPPPRFEP
Sbjct: 1    MASESS-HLLPFNTLIHMINIKLSSSNYLLWKSQLLPLLESQDLLAYVDGTLVPPPRFEP 60

Query: 61   ETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTYSHQSKAR 120
            ETS+T + KYLAW+AADQRLLCLLLSSLTEEA+AVVVGLSTAR+VWLALE T+SH SKAR
Sbjct: 61   ETSTTLSTKYLAWKAADQRLLCLLLSSLTEEAIAVVVGLSTAREVWLALENTFSHHSKAR 120

Query: 121  ELRLKDDLQLMKRGTKPVAEYARAFKKICDQLHAIGRPVEDIDKVH-------------- 180
            ELRLKDDLQLMKRGTKPVAEYAR FK +CDQLHAIGRPVED DKVH              
Sbjct: 121  ELRLKDDLQLMKRGTKPVAEYARTFKTLCDQLHAIGRPVEDTDKVHWFLHGLGPDFSSFS 180

Query: 181  ------------------------------------------------------------ 240
                                                                        
Sbjct: 181  TPQMSLTPLPYFADLVSKAESFELFQRSLESSEPTTAAFTTTNRSRTTSHGTPFAFRNNQ 240

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 241  RGRSHSHNNNSSNRGRTYSGHGRRPPRCQICRIEGHYADRCNQRYARTDSSAHLAEAFNT 300

Query: 301  ------------------------------------------------------------ 360
                                                                        
Sbjct: 301  SCSLSGPEAADWFLDTGASAHMTTDPSNLDQSKNYMGKDSVIVGNGASLPITHTGTLSPV 360

Query: 361  ------------------------------------------------------------ 420
                                                                        
Sbjct: 361  PNIHLLDNRQTGRMVATGKRDGGLYVLERGNSAFISVLKNKSLRASYDLWHARLAHLRTS 420

Query: 421  -----------------------------------------------CTAAYIINRLPTP 480
                                                            TA YIINRLPTP
Sbjct: 421  GIHHQLSCPYTPAQNGRAERKHRHVTETGLALLFHSHLSPRFWVDAFSTATYIINRLPTP 480

Query: 481  LLGGKSPFELLYGYTPHYDNFHPFGCRVYPYLRDYMPNKLSPRSIPCIFLGYSPVHKGFR 540
            LLGGKSPFELLYG++PHY+NFHPFGCRVYP LRDYMPNKLSPRSIPCIFLGYSP HKGFR
Sbjct: 481  LLGGKSPFELLYGHSPHYENFHPFGCRVYPCLRDYMPNKLSPRSIPCIFLGYSPSHKGFR 540

Query: 541  CLDPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIPISNFLEPHLHHIDSSPPTTSSP- 600
            CLDP T++LYIT HAQFDETHFP +PSSQAQPLS++ ISNFLEP LHHID SPP+  SP 
Sbjct: 541  CLDPTTSRLYITRHAQFDETHFPTVPSSQAQPLSSLHISNFLEPRLHHIDPSPPSPPSPS 600

Query: 601  -HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLSPSTSNSTSIEPPVD-FSSLSTHPMIT 660
             HIP+S+SSPC+ICSDLVDESV+VDTSLAGS+L P  S+  SIE   D  SSL +HPMIT
Sbjct: 601  SHIPRSNSSPCNICSDLVDESVKVDTSLAGSSLPPLASSPHSIEHAADSSSSLGSHPMIT 660

Query: 661  RAKAGIFKTRHPANLGMLGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIRALQQND 720
            RAKAGIFKTRHPANLG+LGSSGLLSALLASTEPKGFKSAAKNPAW+AAMDEE++ALQQN 
Sbjct: 661  RAKAGIFKTRHPANLGVLGSSGLLSALLASTEPKGFKSAAKNPAWLAAMDEEVQALQQNG 720

Query: 721  TWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARLVAKGYTQVPGLDYTDTFSPVVKA 780
            TW LVPRP NTNIVGSKWVFR KYLPDGSVER KARLVAKGYTQVPGLDYTDTFSPVVKA
Sbjct: 721  TWILVPRPVNTNIVGSKWVFRTKYLPDGSVERLKARLVAKGYTQVPGLDYTDTFSPVVKA 780

Query: 781  TTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYVDPRFPKHVCLLKKALY 813
            TTVRVVLS+A+TNKWPLRQLDVKNAFLNGTL E V+MEQPPGY+DPRFP HVCLLKKALY
Sbjct: 781  TTVRVVLSLAITNKWPLRQLDVKNAFLNGTLTEHVYMEQPPGYIDPRFPTHVCLLKKALY 840

[Close]

BLAST of CmaCh01G011090 vs. ExPASy TrEMBL
Match: A0A438E275 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3495 PE=3 SV=1)

HSP 1 Score: 1319.7 bits (3414), Expect = 0.0e+00
Identity = 720/1110 (64.86%), Postives = 763/1110 (68.74%), Query Frame = 0


Query: 1    MASESCYHLLPFNTLIHMITIKLSSSNYLLWKSQLLPLLESQDMLGYVDGTMVPPPRFEP 60
            MASES  HLLPFNTLIHMITIKLSSSNYLLWKSQLLP LESQD+L YVDGT+VPPPRFEP
Sbjct: 118  MASESS-HLLPFNTLIHMITIKLSSSNYLLWKSQLLPFLESQDLLAYVDGTLVPPPRFEP 177

Query: 61   ETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTYSHQSKAR 120
            ETS+T + KYLAW+AA+QRLLCLLLSSLTEEA+AVVVGLSTAR+VWLALE T+SH SKAR
Sbjct: 178  ETSTTLSTKYLAWKAANQRLLCLLLSSLTEEAIAVVVGLSTAREVWLALENTFSHHSKAR 237

Query: 121  ELRLKDDLQLMKRGTKPVAEYARAFKKICDQLHAIGRPVEDIDKVH-------------- 180
            ELRLKDDLQLMKRGTKPVAEYAR FK +CDQLHAIGRPVED DKVH              
Sbjct: 238  ELRLKDDLQLMKRGTKPVAEYARTFKTLCDQLHAIGRPVEDTDKVHWFLHLVSKAESFEL 297

Query: 181  ------------------------------------------------------------ 240
                                                                        
Sbjct: 298  FQRSLESSEPTTAAFTATNRSRTTSHGTPFAFRNNQRGRSHSHNNNSSNRGRTYSGHGRR 357

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 358  PPRCQICCIEGHYADRCNQRYARTDSSAHLAEAFNTSCSLSGPEAADWFLDTRASAHMTT 417

Query: 301  ------------------------------------------------------------ 360
                                                                        
Sbjct: 418  DPSILDQSKNYMGKDSVIVGNGASLPITHTGTLSPVPNIHLLDNRQTGRVVATGKRDGGL 477

Query: 361  ------------------------------------------------------------ 420
                                                                        
Sbjct: 478  YVLERSNSAFIYVLKNKSLRASYDLWHARLAHLRTSGIHHQLSCPYTPAQNGRAERKHRH 537

Query: 421  -----------------------CTAAYIINRLPTPLLGGKSPFELLYGYTPHYDNFHPF 480
                                    TA YIIN LPTPLLGGKSPFELLY Y+PHY+NFHPF
Sbjct: 538  VTETGLALLFHSHLSPRFWVDAFSTATYIINWLPTPLLGGKSPFELLYDYSPHYENFHPF 597

Query: 481  GCRVYPYLRDYMPNKLSPRSIPCIFLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFPA 540
            GCRVYP LRDYM NKLSPRSIPCIFLGYSP HKGFRCLDP T++LYIT HAQFDETHFP 
Sbjct: 598  GCRVYPCLRDYMSNKLSPRSIPCIFLGYSPSHKGFRCLDPTTSRLYITRHAQFDETHFPT 657

Query: 541  IPSSQAQPLSTIPISNFLEPHLHHIDSSPPTTSSP--HIPQSSSSPCDICSDLVDESVQV 600
            +PSSQAQPLS++ ISNFLEP LHHID SPP+  SP  HIP+S+SSPC+ICSDLVDESVQV
Sbjct: 658  VPSSQAQPLSSLHISNFLEPRLHHIDPSPPSPPSPSSHIPRSNSSPCNICSDLVDESVQV 717

Query: 601  DTSLAGSTLSPSTSNSTSIEPPVD-FSSLSTHPMITRAKAGIFKTRHPANLGMLGSSGLL 660
            DTSLAG +L P  S+  SIE   D  SSL +HPMITRAKAGIFKTRHPANLG+LGSSGLL
Sbjct: 718  DTSLAGCSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSSGLL 777

Query: 661  SALLASTEPKGFKSAAKNPAWVAAMDEEIRALQQNDTWTLVPRPANTNIVGSKWVFRIKY 720
             ALLASTEPKGFKSAAKNPAW+AAMDEE++ALQQN TW LVPRP NTNIVGSKWVFR KY
Sbjct: 778  FALLASTEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFRTKY 837

Query: 721  LPDGSVERFKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKN 780
            LPDGSVER KARLVAKGYT VPGLDYTD FSPVVKATTVRVVLS+AVTNKWPLRQLDVKN
Sbjct: 838  LPDGSVERLKARLVAKGYTHVPGLDYTDIFSPVVKATTVRVVLSLAVTNKWPLRQLDVKN 897

Query: 781  AFLNGTLIERVHMEQPPGYVDPRFPKHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSC 827
            AFLNGTL E V+MEQPPGY+D RFP HVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSC
Sbjct: 898  AFLNGTLTEHVYMEQPPGYIDHRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSC 957

[Close]

BLAST of CmaCh01G011090 vs. ExPASy TrEMBL
Match: A0A2N9I601 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49318 PE=4 SV=1)

HSP 1 Score: 1266.5 bits (3276), Expect = 0.0e+00
Identity = 675/1068 (63.20%), Postives = 737/1068 (69.01%), Query Frame = 0


Query: 1    MASESCYHLLPFNTLIHMITIKLSSSNYLLWKSQLLPLLESQDMLGYVDGTMVPPPRFEP 60
            MAS+S   LLPFNT+IHM+TIKLSSSNYLLWKSQLLPLLESQ++LG+VDGT+VPPP F+P
Sbjct: 1    MASDSSPTLLPFNTMIHMVTIKLSSSNYLLWKSQLLPLLESQNLLGHVDGTLVPPPPFDP 60

Query: 61   ETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTYSHQSKAR 120
             TS T +PK+LAW+A DQRLL LLLSSLTEEAMA  VGLST+R+VW ALE T+SH+SKAR
Sbjct: 61   PTSQTPDPKHLAWKATDQRLLSLLLSSLTEEAMAEAVGLSTSREVWTALENTFSHRSKAR 120

Query: 121  ELRLKDDLQLMKRGTKPVAEYARAFKKICDQLHAIGRPVEDIDKVH-------------- 180
            E+RLKDDLQLMKRGT+PV  YARAFK +CDQLHAIGRPV+D DK H              
Sbjct: 121  EIRLKDDLQLMKRGTRPVTAYARAFKALCDQLHAIGRPVDDTDKTHWFLRGLGSDFSSFS 180

Query: 181  ------------------------------------------------------------ 240
                                                                        
Sbjct: 181  TAQLALTPLPCFADLVSKAESFELFQRSLEPSATTAAAFTATSRGRASNHGHFSSNRSNQ 240

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 241  QGRSNNHSSNRGRSNSGQGRRPPRCQICRTEGHYADRCHQRYARTDSSAHLAEAFNASCS 300

Query: 301  ------------------------------------------------------------ 360
                                                                        
Sbjct: 301  LSETNPSDWYLDTGASAHMTPAQATLDQSTTYTGKDCVIVGNGASLPITHTEFTCNRFQD 360

Query: 361  ----------------------------------------------------CTAAYIIN 420
                                                                 TAAYIIN
Sbjct: 361  HLSTSGIHHQLSCPHTPAQNGRAERKHRHVTETGLALLFHSHTSPRFWVDAFSTAAYIIN 420

Query: 421  RLPTPLLGGKSPFELLYGYTPHYDNFHPFGCRVYPYLRDYMPNKLSPRSIPCIFLGYSPV 480
            RLPT LLGGKSPFELLYG +P+Y+NFHPFGCRVYP LRDYMPNKLSPRSIPCIFLGYSP 
Sbjct: 421  RLPTSLLGGKSPFELLYGSSPNYENFHPFGCRVYPCLRDYMPNKLSPRSIPCIFLGYSPS 480

Query: 481  HKGFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIPISNFLEPHLHHIDSSP-- 540
            HKGFRCLDP T+++YIT HAQFDETHFP + +SQAQP+S++  SNFLEP L   D  P  
Sbjct: 481  HKGFRCLDPTTSRIYITRHAQFDETHFPFLNTSQAQPISSLQFSNFLEPSLPPTDMPPSS 540

Query: 541  PTTSSPHIPQSSSSPCDICSDLVDESVQVDTSLAGSTLSPSTSNSTSIE--------PPV 600
            P   SPHIPQS S+PCDIC+D VDES+QV+ SL G +L PS  +  S+E         PV
Sbjct: 541  PAPHSPHIPQSGSNPCDICTDPVDESLQVNDSLTGPSLPPSDPSPASLELPTELPTPAPV 600

Query: 601  DFSSLSTHPMITRAKAGIFKTRHPANLGMLGSSGLLSALLASTEPKGFKSAAKNPAWVAA 660
              + + +HPM+TRAKAGIFKTRHPANL +LG SGLLSALLASTEPKGFKSAAKNPAW+AA
Sbjct: 601  AATPMPSHPMLTRAKAGIFKTRHPANLAILGPSGLLSALLASTEPKGFKSAAKNPAWLAA 660

Query: 661  MDEEIRALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARLVAKGYTQVPGL 720
            MDEEI+ALQ N TW LVPRPANTNIVGSKWVFR KYLPDGS+ER KARLVAKGYTQVPGL
Sbjct: 661  MDEEIQALQTNRTWILVPRPANTNIVGSKWVFRTKYLPDGSIERLKARLVAKGYTQVPGL 720

Query: 721  DYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYVDPRF 780
            DYTDTFSPV+KATTVRVVLS+AVTNKWPLRQLDVKNAFLNG+L E V+MEQPPGY+DPRF
Sbjct: 721  DYTDTFSPVIKATTVRVVLSLAVTNKWPLRQLDVKNAFLNGSLTEHVYMEQPPGYIDPRF 780

Query: 781  PKHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQSNLIYLLLYVD 813
            P HVC LKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQS +IYLLLYVD
Sbjct: 781  PHHVCHLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQSGIIYLLLYVD 840

[Close]

BLAST of CmaCh01G011090 vs. ExPASy TrEMBL
Match: A0A438EBA0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2065 PE=4 SV=1)

HSP 1 Score: 1255.0 bits (3246), Expect = 0.0e+00
Identity = 716/1284 (55.76%), Postives = 756/1284 (58.88%), Query Frame = 0


Query: 1    MASESCYHLLPFNTLIHMITIKLSSSNYLLWKSQLLPLLESQDMLGYVDGTMVPPPRFEP 60
            MASES  HLLPFNTLIHMITIKLSSSNYLLWKSQLLPLLESQD+LGYVDGT+VPPPRFEP
Sbjct: 17   MASESS-HLLPFNTLIHMITIKLSSSNYLLWKSQLLPLLESQDLLGYVDGTLVPPPRFEP 76

Query: 61   ETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTYSHQSKAR 120
            ETS+T + KYLAW+AADQRLLCLLLSSLTEEA+ VVVGLSTAR+VWLALE T+SH SKAR
Sbjct: 77   ETSTTLSTKYLAWKAADQRLLCLLLSSLTEEAIVVVVGLSTAREVWLALENTFSHHSKAR 136

Query: 121  ELRLKDDLQLMKRGTKPVAEYARAFKKICDQLHAIGRPVEDIDKVH-------------- 180
            ELRLKDDLQLMKRGTKPVAEYAR FK +CDQLHAIGRPVED DKVH              
Sbjct: 137  ELRLKDDLQLMKRGTKPVAEYARTFKTLCDQLHAIGRPVEDTDKVHWFLRGLGTDFSSFS 196

Query: 181  ------------------------------------------------------------ 240
                                                                        
Sbjct: 197  TAQMSLTPLPYFADLVSKAESFELFQRSLESSEPTTAAFTATNRSHTTSHGTPFAFRNNQ 256

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 257  RGRSHSHNNNSSNRGRTYSGHGRRPPRCQICRIEGHYADRCNQRYARTDSSAHLAEAFNT 316

Query: 301  ------------------------------------------------------------ 360
                                                                        
Sbjct: 317  SCSLSGPEAADWFLDTGASAHMTTDPSILDQSKNYMGKDFVIVGNGASLPITHTGTLSPV 376

Query: 361  ------------------------------------------------------------ 420
                                                                        
Sbjct: 377  PNIHLLDVLVVPHLTKNLLSISKLTSDFPLSVTFTNNLFTVQNRQTGRVVATGKRDGGLY 436

Query: 421  ------------------------------------------------------------ 480
                                                                        
Sbjct: 437  VLERGNSAFISVLKNKSLRASYDLWHARLGHVNYSVISFINKKGHLSLTSLLPSPSLCST 496

Query: 481  ------------------------------------------------------------ 540
                                                                        
Sbjct: 497  CQLAKNHRLPYSRNEHRSSHVLDLIHCDLWGPSPIKSNSGFLYYVIFIDDHSRFTWLYPL 556

Query: 541  ------------------------------------------------------------ 600
                                                                        
Sbjct: 557  KFKSDFFDIFLQFQKFVENQHSARIKVFQSDGGAEFTNTCFKAHLRTSGIHHQLSCPYTP 616

Query: 601  -----------------------------------CTAAYIINRLPTPLLGGKSPFELLY 660
                                                T  YIINRLPTPLLGGKSPFELLY
Sbjct: 617  AQNGRAERKHRHVTETGLALLFHSHLSPRFWVDAFSTTTYIINRLPTPLLGGKSPFELLY 676

Query: 661  GYTPHYDNFHPFGCRVYPYLRDYMPNKLSPRSIPCIFLGYSPVHKGFRCLDPATTKLYIT 720
            GY+PHY+NFHPFGC VYP LRDYMPNKLSPRSIPCIFLGYSP HKGFRCLDP T++LYIT
Sbjct: 677  GYSPHYENFHPFGCHVYPCLRDYMPNKLSPRSIPCIFLGYSPSHKGFRCLDPTTSRLYIT 736

Query: 721  CHAQFDETHFPAIPSSQAQPLSTIPISNFLEPHLHHIDSSPPTTSSP--HIPQSSSSPCD 780
             HAQFDETHFP +PSSQAQPLS++ ISNFLEP LHHID SPP+  SP  HIP+S+SSPC+
Sbjct: 737  RHAQFDETHFPTVPSSQAQPLSSLHISNFLEPRLHHIDPSPPSPPSPSSHIPRSNSSPCN 796

Query: 781  ICSDLVDESVQVDTSLAGSTLSPSTSNSTSIEPPVD-FSSLSTHPMITRAKAGIFKTRHP 813
            ICSDLVDESVQVDTSLAGS+L P  S+  SIE   D  SSL +HPMITRAKAGIFKTRHP
Sbjct: 797  ICSDLVDESVQVDTSLAGSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHP 856

[Close]

BLAST of CmaCh01G011090 vs. ExPASy TrEMBL
Match: A0A438IHQ8 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2593 PE=4 SV=1)

HSP 1 Score: 1239.2 bits (3205), Expect = 0.0e+00
Identity = 669/998 (67.03%), Postives = 711/998 (71.24%), Query Frame = 0


Query: 1   MASESCYHLLPFNTLIHMITIKLSSSNYLLWKSQLLPLLESQDMLGYVDGTMVPPPRFEP 60
           MASES +HLLPFNTLIHMITIKLSSSNYLLWKSQLL LLESQD+LGYVDGT+VPPPRFEP
Sbjct: 26  MASES-FHLLPFNTLIHMITIKLSSSNYLLWKSQLLSLLESQDLLGYVDGTLVPPPRFEP 85

Query: 61  ETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTYSHQSKAR 120
           ETS+T + KYLAW+A DQRLLCLLLSSLTEEA+AVVVGLSTAR+VWLALE T+SH  KAR
Sbjct: 86  ETSTTLSTKYLAWKAIDQRLLCLLLSSLTEEAIAVVVGLSTAREVWLALENTFSHHLKAR 145

Query: 121 ELRLKDDLQLMKRGTKPVAEYARAFKKICDQLHAIGRPVEDIDKVHC------------- 180
           ELRLKDDLQLMKR TKPVAEYAR FK +CDQLHAIGRPVEDIDKVHC             
Sbjct: 146 ELRLKDDLQLMKRDTKPVAEYARTFKTLCDQLHAIGRPVEDIDKVHCRTTSHGTPFAFRS 205

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 206 NQRGRSHSHNNNSSNRGRTYSGHGRRPPRCQICRIEGYYANRCNQRYARTDSSAHLAKAL 265

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 266 NTSCSLSGLEAADWFLDTGASAHMTTDPSILDQSKNYMGKDSVIVGNGASLPITHTAHLR 325

Query: 301 --------------------------------------------------TAAYIINRLP 360
                                                             TA YIINRLP
Sbjct: 326 TSGIHHQLFCPYTPAQNGRAERKHRHVTETGLALLFYSHLSPRFWVDAFSTATYIINRLP 385

Query: 361 TPLLGGKSPFELLYGYTPHYDNFHPFGCRVYPYLRDYMPNKLSPRSIPCIFLGYSPVHKG 420
           TPLLGGK+ FELLYGY+PHY+NFHPFGCRVYP LRDYMPNKLSPRSIPCIFLGYSP HKG
Sbjct: 386 TPLLGGKASFELLYGYSPHYENFHPFGCRVYPCLRDYMPNKLSPRSIPCIFLGYSPSHKG 445

Query: 421 FRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIPISNFLEPHLHHIDSSP--PTT 480
           FRCLDP T++LYIT HAQFDETHFP IPSSQAQPLS++ ISNFLEP LHHID SP  PT+
Sbjct: 446 FRCLDPTTSRLYITRHAQFDETHFPTIPSSQAQPLSSLHISNFLEPRLHHIDPSPPSPTS 505

Query: 481 SSPHIPQSSSSPCDICSDLVDESVQVDTSLAGSTLSPSTSNSTSIEPPVD-FSSLSTHPM 540
            S HIP+S+SSPC+ICSDLVDESVQVDTSLAGS+  P  S+  SIE   D  SSL +HPM
Sbjct: 506 HSSHIPRSNSSPCNICSDLVDESVQVDTSLAGSSFPPLASSPHSIELAADSSSSLGSHPM 565

Query: 541 ITRAKAGIFKTRHPANLGMLGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIRALQQ 600
           ITRAKAGIFKTRHPANLG+LGS GLLS LL STEPKGFKSAAKNP W+A MDEE++ALQQ
Sbjct: 566 ITRAKAGIFKTRHPANLGVLGSFGLLSTLLTSTEPKGFKSAAKNPVWLATMDEEVQALQQ 625

Query: 601 NDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARLVAKGYTQVPGLDYTDTFSPVV 660
           N                                         GYTQVPGLDYTDTFS VV
Sbjct: 626 N-----------------------------------------GYTQVPGLDYTDTFSLVV 685

Query: 661 KATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYVDPRFPKHVCLLKKA 720
           KATTVRVVLS+AVTNKWPLRQ DVKNAFLNGTL E V+MEQP GY+D RFP HVCLLKKA
Sbjct: 686 KATTVRVVLSLAVTNKWPLRQFDVKNAFLNGTLTEHVYMEQPLGYIDSRFPTHVCLLKKA 745

Query: 721 LYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQSNLIYLLLYVDDIIVTGNNSS 780
           LYGLKQAPRAWFQRFSSFLLTLGFS SRA  SLFVFHQQS+LIYLLLYV DIIVTGNN S
Sbjct: 746 LYGLKQAPRAWFQRFSSFLLTLGFSSSRAYISLFVFHQQSSLIYLLLYVYDIIVTGNNPS 805

Query: 781 LINSFTRKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVH 813
           L+++FTRKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVH
Sbjct: 806 LLDNFTRKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVH 865

[Close]

BLAST of CmaCh01G011090 vs. NCBI nr
Match: RVW43615.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 1331.6 bits (3445), Expect = 0.0e+00
Identity = 721/1116 (64.61%), Postives = 763/1116 (68.37%), Query Frame = 0


Query: 1    MASESCYHLLPFNTLIHMITIKLSSSNYLLWKSQLLPLLESQDMLGYVDGTMVPPPRFEP 60
            MASES  HLLPFNTLIHMI IKLSSSNYLLWKSQLLPLLESQD+L YVDGT+VPPPRFEP
Sbjct: 1    MASESS-HLLPFNTLIHMINIKLSSSNYLLWKSQLLPLLESQDLLAYVDGTLVPPPRFEP 60

Query: 61   ETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTYSHQSKAR 120
            ETS+T + KYLAW+AADQRLLCLLLSSLTEEA+AVVVGLSTAR+VWLALE T+SH SKAR
Sbjct: 61   ETSTTLSTKYLAWKAADQRLLCLLLSSLTEEAIAVVVGLSTAREVWLALENTFSHHSKAR 120

Query: 121  ELRLKDDLQLMKRGTKPVAEYARAFKKICDQLHAIGRPVEDIDKVH-------------- 180
            ELRLKDDLQLMKRGTKPVAEYAR FK +CDQLHAIGRPVED DKVH              
Sbjct: 121  ELRLKDDLQLMKRGTKPVAEYARTFKTLCDQLHAIGRPVEDTDKVHWFLHGLGPDFSSFS 180

Query: 181  ------------------------------------------------------------ 240
                                                                        
Sbjct: 181  TPQMSLTPLPYFADLVSKAESFELFQRSLESSEPTTAAFTTTNRSRTTSHGTPFAFRNNQ 240

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 241  RGRSHSHNNNSSNRGRTYSGHGRRPPRCQICRIEGHYADRCNQRYARTDSSAHLAEAFNT 300

Query: 301  ------------------------------------------------------------ 360
                                                                        
Sbjct: 301  SCSLSGPEAADWFLDTGASAHMTTDPSNLDQSKNYMGKDSVIVGNGASLPITHTGTLSPV 360

Query: 361  ------------------------------------------------------------ 420
                                                                        
Sbjct: 361  PNIHLLDNRQTGRMVATGKRDGGLYVLERGNSAFISVLKNKSLRASYDLWHARLAHLRTS 420

Query: 421  -----------------------------------------------CTAAYIINRLPTP 480
                                                            TA YIINRLPTP
Sbjct: 421  GIHHQLSCPYTPAQNGRAERKHRHVTETGLALLFHSHLSPRFWVDAFSTATYIINRLPTP 480

Query: 481  LLGGKSPFELLYGYTPHYDNFHPFGCRVYPYLRDYMPNKLSPRSIPCIFLGYSPVHKGFR 540
            LLGGKSPFELLYG++PHY+NFHPFGCRVYP LRDYMPNKLSPRSIPCIFLGYSP HKGFR
Sbjct: 481  LLGGKSPFELLYGHSPHYENFHPFGCRVYPCLRDYMPNKLSPRSIPCIFLGYSPSHKGFR 540

Query: 541  CLDPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIPISNFLEPHLHHIDSSPPTTSSP- 600
            CLDP T++LYIT HAQFDETHFP +PSSQAQPLS++ ISNFLEP LHHID SPP+  SP 
Sbjct: 541  CLDPTTSRLYITRHAQFDETHFPTVPSSQAQPLSSLHISNFLEPRLHHIDPSPPSPPSPS 600

Query: 601  -HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLSPSTSNSTSIEPPVD-FSSLSTHPMIT 660
             HIP+S+SSPC+ICSDLVDESV+VDTSLAGS+L P  S+  SIE   D  SSL +HPMIT
Sbjct: 601  SHIPRSNSSPCNICSDLVDESVKVDTSLAGSSLPPLASSPHSIEHAADSSSSLGSHPMIT 660

Query: 661  RAKAGIFKTRHPANLGMLGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIRALQQND 720
            RAKAGIFKTRHPANLG+LGSSGLLSALLASTEPKGFKSAAKNPAW+AAMDEE++ALQQN 
Sbjct: 661  RAKAGIFKTRHPANLGVLGSSGLLSALLASTEPKGFKSAAKNPAWLAAMDEEVQALQQNG 720

Query: 721  TWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARLVAKGYTQVPGLDYTDTFSPVVKA 780
            TW LVPRP NTNIVGSKWVFR KYLPDGSVER KARLVAKGYTQVPGLDYTDTFSPVVKA
Sbjct: 721  TWILVPRPVNTNIVGSKWVFRTKYLPDGSVERLKARLVAKGYTQVPGLDYTDTFSPVVKA 780

Query: 781  TTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYVDPRFPKHVCLLKKALY 813
            TTVRVVLS+A+TNKWPLRQLDVKNAFLNGTL E V+MEQPPGY+DPRFP HVCLLKKALY
Sbjct: 781  TTVRVVLSLAITNKWPLRQLDVKNAFLNGTLTEHVYMEQPPGYIDPRFPTHVCLLKKALY 840

[Close]

BLAST of CmaCh01G011090 vs. NCBI nr
Match: RVW41798.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 1319.7 bits (3414), Expect = 0.0e+00
Identity = 720/1110 (64.86%), Postives = 763/1110 (68.74%), Query Frame = 0


Query: 1    MASESCYHLLPFNTLIHMITIKLSSSNYLLWKSQLLPLLESQDMLGYVDGTMVPPPRFEP 60
            MASES  HLLPFNTLIHMITIKLSSSNYLLWKSQLLP LESQD+L YVDGT+VPPPRFEP
Sbjct: 118  MASESS-HLLPFNTLIHMITIKLSSSNYLLWKSQLLPFLESQDLLAYVDGTLVPPPRFEP 177

Query: 61   ETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTYSHQSKAR 120
            ETS+T + KYLAW+AA+QRLLCLLLSSLTEEA+AVVVGLSTAR+VWLALE T+SH SKAR
Sbjct: 178  ETSTTLSTKYLAWKAANQRLLCLLLSSLTEEAIAVVVGLSTAREVWLALENTFSHHSKAR 237

Query: 121  ELRLKDDLQLMKRGTKPVAEYARAFKKICDQLHAIGRPVEDIDKVH-------------- 180
            ELRLKDDLQLMKRGTKPVAEYAR FK +CDQLHAIGRPVED DKVH              
Sbjct: 238  ELRLKDDLQLMKRGTKPVAEYARTFKTLCDQLHAIGRPVEDTDKVHWFLHLVSKAESFEL 297

Query: 181  ------------------------------------------------------------ 240
                                                                        
Sbjct: 298  FQRSLESSEPTTAAFTATNRSRTTSHGTPFAFRNNQRGRSHSHNNNSSNRGRTYSGHGRR 357

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 358  PPRCQICCIEGHYADRCNQRYARTDSSAHLAEAFNTSCSLSGPEAADWFLDTRASAHMTT 417

Query: 301  ------------------------------------------------------------ 360
                                                                        
Sbjct: 418  DPSILDQSKNYMGKDSVIVGNGASLPITHTGTLSPVPNIHLLDNRQTGRVVATGKRDGGL 477

Query: 361  ------------------------------------------------------------ 420
                                                                        
Sbjct: 478  YVLERSNSAFIYVLKNKSLRASYDLWHARLAHLRTSGIHHQLSCPYTPAQNGRAERKHRH 537

Query: 421  -----------------------CTAAYIINRLPTPLLGGKSPFELLYGYTPHYDNFHPF 480
                                    TA YIIN LPTPLLGGKSPFELLY Y+PHY+NFHPF
Sbjct: 538  VTETGLALLFHSHLSPRFWVDAFSTATYIINWLPTPLLGGKSPFELLYDYSPHYENFHPF 597

Query: 481  GCRVYPYLRDYMPNKLSPRSIPCIFLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFPA 540
            GCRVYP LRDYM NKLSPRSIPCIFLGYSP HKGFRCLDP T++LYIT HAQFDETHFP 
Sbjct: 598  GCRVYPCLRDYMSNKLSPRSIPCIFLGYSPSHKGFRCLDPTTSRLYITRHAQFDETHFPT 657

Query: 541  IPSSQAQPLSTIPISNFLEPHLHHIDSSPPTTSSP--HIPQSSSSPCDICSDLVDESVQV 600
            +PSSQAQPLS++ ISNFLEP LHHID SPP+  SP  HIP+S+SSPC+ICSDLVDESVQV
Sbjct: 658  VPSSQAQPLSSLHISNFLEPRLHHIDPSPPSPPSPSSHIPRSNSSPCNICSDLVDESVQV 717

Query: 601  DTSLAGSTLSPSTSNSTSIEPPVD-FSSLSTHPMITRAKAGIFKTRHPANLGMLGSSGLL 660
            DTSLAG +L P  S+  SIE   D  SSL +HPMITRAKAGIFKTRHPANLG+LGSSGLL
Sbjct: 718  DTSLAGCSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSSGLL 777

Query: 661  SALLASTEPKGFKSAAKNPAWVAAMDEEIRALQQNDTWTLVPRPANTNIVGSKWVFRIKY 720
             ALLASTEPKGFKSAAKNPAW+AAMDEE++ALQQN TW LVPRP NTNIVGSKWVFR KY
Sbjct: 778  FALLASTEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFRTKY 837

Query: 721  LPDGSVERFKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKN 780
            LPDGSVER KARLVAKGYT VPGLDYTD FSPVVKATTVRVVLS+AVTNKWPLRQLDVKN
Sbjct: 838  LPDGSVERLKARLVAKGYTHVPGLDYTDIFSPVVKATTVRVVLSLAVTNKWPLRQLDVKN 897

Query: 781  AFLNGTLIERVHMEQPPGYVDPRFPKHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSC 827
            AFLNGTL E V+MEQPPGY+D RFP HVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSC
Sbjct: 898  AFLNGTLTEHVYMEQPPGYIDHRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSC 957

[Close]

BLAST of CmaCh01G011090 vs. NCBI nr
Match: RVW45095.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 1255.0 bits (3246), Expect = 0.0e+00
Identity = 716/1284 (55.76%), Postives = 756/1284 (58.88%), Query Frame = 0


Query: 1    MASESCYHLLPFNTLIHMITIKLSSSNYLLWKSQLLPLLESQDMLGYVDGTMVPPPRFEP 60
            MASES  HLLPFNTLIHMITIKLSSSNYLLWKSQLLPLLESQD+LGYVDGT+VPPPRFEP
Sbjct: 17   MASESS-HLLPFNTLIHMITIKLSSSNYLLWKSQLLPLLESQDLLGYVDGTLVPPPRFEP 76

Query: 61   ETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTYSHQSKAR 120
            ETS+T + KYLAW+AADQRLLCLLLSSLTEEA+ VVVGLSTAR+VWLALE T+SH SKAR
Sbjct: 77   ETSTTLSTKYLAWKAADQRLLCLLLSSLTEEAIVVVVGLSTAREVWLALENTFSHHSKAR 136

Query: 121  ELRLKDDLQLMKRGTKPVAEYARAFKKICDQLHAIGRPVEDIDKVH-------------- 180
            ELRLKDDLQLMKRGTKPVAEYAR FK +CDQLHAIGRPVED DKVH              
Sbjct: 137  ELRLKDDLQLMKRGTKPVAEYARTFKTLCDQLHAIGRPVEDTDKVHWFLRGLGTDFSSFS 196

Query: 181  ------------------------------------------------------------ 240
                                                                        
Sbjct: 197  TAQMSLTPLPYFADLVSKAESFELFQRSLESSEPTTAAFTATNRSHTTSHGTPFAFRNNQ 256

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 257  RGRSHSHNNNSSNRGRTYSGHGRRPPRCQICRIEGHYADRCNQRYARTDSSAHLAEAFNT 316

Query: 301  ------------------------------------------------------------ 360
                                                                        
Sbjct: 317  SCSLSGPEAADWFLDTGASAHMTTDPSILDQSKNYMGKDFVIVGNGASLPITHTGTLSPV 376

Query: 361  ------------------------------------------------------------ 420
                                                                        
Sbjct: 377  PNIHLLDVLVVPHLTKNLLSISKLTSDFPLSVTFTNNLFTVQNRQTGRVVATGKRDGGLY 436

Query: 421  ------------------------------------------------------------ 480
                                                                        
Sbjct: 437  VLERGNSAFISVLKNKSLRASYDLWHARLGHVNYSVISFINKKGHLSLTSLLPSPSLCST 496

Query: 481  ------------------------------------------------------------ 540
                                                                        
Sbjct: 497  CQLAKNHRLPYSRNEHRSSHVLDLIHCDLWGPSPIKSNSGFLYYVIFIDDHSRFTWLYPL 556

Query: 541  ------------------------------------------------------------ 600
                                                                        
Sbjct: 557  KFKSDFFDIFLQFQKFVENQHSARIKVFQSDGGAEFTNTCFKAHLRTSGIHHQLSCPYTP 616

Query: 601  -----------------------------------CTAAYIINRLPTPLLGGKSPFELLY 660
                                                T  YIINRLPTPLLGGKSPFELLY
Sbjct: 617  AQNGRAERKHRHVTETGLALLFHSHLSPRFWVDAFSTTTYIINRLPTPLLGGKSPFELLY 676

Query: 661  GYTPHYDNFHPFGCRVYPYLRDYMPNKLSPRSIPCIFLGYSPVHKGFRCLDPATTKLYIT 720
            GY+PHY+NFHPFGC VYP LRDYMPNKLSPRSIPCIFLGYSP HKGFRCLDP T++LYIT
Sbjct: 677  GYSPHYENFHPFGCHVYPCLRDYMPNKLSPRSIPCIFLGYSPSHKGFRCLDPTTSRLYIT 736

Query: 721  CHAQFDETHFPAIPSSQAQPLSTIPISNFLEPHLHHIDSSPPTTSSP--HIPQSSSSPCD 780
             HAQFDETHFP +PSSQAQPLS++ ISNFLEP LHHID SPP+  SP  HIP+S+SSPC+
Sbjct: 737  RHAQFDETHFPTVPSSQAQPLSSLHISNFLEPRLHHIDPSPPSPPSPSSHIPRSNSSPCN 796

Query: 781  ICSDLVDESVQVDTSLAGSTLSPSTSNSTSIEPPVD-FSSLSTHPMITRAKAGIFKTRHP 813
            ICSDLVDESVQVDTSLAGS+L P  S+  SIE   D  SSL +HPMITRAKAGIFKTRHP
Sbjct: 797  ICSDLVDESVQVDTSLAGSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHP 856

[Close]

BLAST of CmaCh01G011090 vs. NCBI nr
Match: RVW96109.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 1239.2 bits (3205), Expect = 0.0e+00
Identity = 669/998 (67.03%), Postives = 711/998 (71.24%), Query Frame = 0


Query: 1   MASESCYHLLPFNTLIHMITIKLSSSNYLLWKSQLLPLLESQDMLGYVDGTMVPPPRFEP 60
           MASES +HLLPFNTLIHMITIKLSSSNYLLWKSQLL LLESQD+LGYVDGT+VPPPRFEP
Sbjct: 26  MASES-FHLLPFNTLIHMITIKLSSSNYLLWKSQLLSLLESQDLLGYVDGTLVPPPRFEP 85

Query: 61  ETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTYSHQSKAR 120
           ETS+T + KYLAW+A DQRLLCLLLSSLTEEA+AVVVGLSTAR+VWLALE T+SH  KAR
Sbjct: 86  ETSTTLSTKYLAWKAIDQRLLCLLLSSLTEEAIAVVVGLSTAREVWLALENTFSHHLKAR 145

Query: 121 ELRLKDDLQLMKRGTKPVAEYARAFKKICDQLHAIGRPVEDIDKVHC------------- 180
           ELRLKDDLQLMKR TKPVAEYAR FK +CDQLHAIGRPVEDIDKVHC             
Sbjct: 146 ELRLKDDLQLMKRDTKPVAEYARTFKTLCDQLHAIGRPVEDIDKVHCRTTSHGTPFAFRS 205

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 206 NQRGRSHSHNNNSSNRGRTYSGHGRRPPRCQICRIEGYYANRCNQRYARTDSSAHLAKAL 265

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 266 NTSCSLSGLEAADWFLDTGASAHMTTDPSILDQSKNYMGKDSVIVGNGASLPITHTAHLR 325

Query: 301 --------------------------------------------------TAAYIINRLP 360
                                                             TA YIINRLP
Sbjct: 326 TSGIHHQLFCPYTPAQNGRAERKHRHVTETGLALLFYSHLSPRFWVDAFSTATYIINRLP 385

Query: 361 TPLLGGKSPFELLYGYTPHYDNFHPFGCRVYPYLRDYMPNKLSPRSIPCIFLGYSPVHKG 420
           TPLLGGK+ FELLYGY+PHY+NFHPFGCRVYP LRDYMPNKLSPRSIPCIFLGYSP HKG
Sbjct: 386 TPLLGGKASFELLYGYSPHYENFHPFGCRVYPCLRDYMPNKLSPRSIPCIFLGYSPSHKG 445

Query: 421 FRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIPISNFLEPHLHHIDSSP--PTT 480
           FRCLDP T++LYIT HAQFDETHFP IPSSQAQPLS++ ISNFLEP LHHID SP  PT+
Sbjct: 446 FRCLDPTTSRLYITRHAQFDETHFPTIPSSQAQPLSSLHISNFLEPRLHHIDPSPPSPTS 505

Query: 481 SSPHIPQSSSSPCDICSDLVDESVQVDTSLAGSTLSPSTSNSTSIEPPVD-FSSLSTHPM 540
            S HIP+S+SSPC+ICSDLVDESVQVDTSLAGS+  P  S+  SIE   D  SSL +HPM
Sbjct: 506 HSSHIPRSNSSPCNICSDLVDESVQVDTSLAGSSFPPLASSPHSIELAADSSSSLGSHPM 565

Query: 541 ITRAKAGIFKTRHPANLGMLGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIRALQQ 600
           ITRAKAGIFKTRHPANLG+LGS GLLS LL STEPKGFKSAAKNP W+A MDEE++ALQQ
Sbjct: 566 ITRAKAGIFKTRHPANLGVLGSFGLLSTLLTSTEPKGFKSAAKNPVWLATMDEEVQALQQ 625

Query: 601 NDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARLVAKGYTQVPGLDYTDTFSPVV 660
           N                                         GYTQVPGLDYTDTFS VV
Sbjct: 626 N-----------------------------------------GYTQVPGLDYTDTFSLVV 685

Query: 661 KATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYVDPRFPKHVCLLKKA 720
           KATTVRVVLS+AVTNKWPLRQ DVKNAFLNGTL E V+MEQP GY+D RFP HVCLLKKA
Sbjct: 686 KATTVRVVLSLAVTNKWPLRQFDVKNAFLNGTLTEHVYMEQPLGYIDSRFPTHVCLLKKA 745

Query: 721 LYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQSNLIYLLLYVDDIIVTGNNSS 780
           LYGLKQAPRAWFQRFSSFLLTLGFS SRA  SLFVFHQQS+LIYLLLYV DIIVTGNN S
Sbjct: 746 LYGLKQAPRAWFQRFSSFLLTLGFSSSRAYISLFVFHQQSSLIYLLLYVYDIIVTGNNPS 805

Query: 781 LINSFTRKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVH 813
           L+++FTRKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVH
Sbjct: 806 LLDNFTRKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVH 865

[Close]

BLAST of CmaCh01G011090 vs. NCBI nr
Match: CAN78022.1 (hypothetical protein VITISV_015518 [Vitis vinifera])

HSP 1 Score: 1140.9 bits (2950), Expect = 0.0e+00
Identity = 669/1248 (53.61%), Postives = 707/1248 (56.65%), Query Frame = 0


Query: 1    MASESCYHLLPFNTLIHMITIKLSSSNYLLWKSQLLPLLESQDMLGYVDGTMVPPPRFEP 60
            MASES  HLLPFNTLIHMITIKLSSSNYLLWKSQLLPLLESQD+L YVDGT+VPPPRFEP
Sbjct: 1    MASESS-HLLPFNTLIHMITIKLSSSNYLLWKSQLLPLLESQDLLAYVDGTLVPPPRFEP 60

Query: 61   ETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTYSHQSKAR 120
            ETS+T + KYLAW+AADQRLLCLLLSSLTEEA+AVVVGLSTAR+VWLALE T+SH SKAR
Sbjct: 61   ETSTTLSTKYLAWKAADQRLLCLLLSSLTEEAIAVVVGLSTAREVWLALENTFSHHSKAR 120

Query: 121  ELRLKDDLQLMKRGTKPVAEYARAFKKICDQLHAIGRPVEDIDKVH-------------- 180
            ELRLKDDLQLMK GTKPVAEYAR FK +CDQLHAIGRPVED DKVH              
Sbjct: 121  ELRLKDDLQLMKCGTKPVAEYARTFKTLCDQLHAIGRPVEDTDKVHWFLRGTRPRFFQFF 180

Query: 181  ------------------------------------------------------------ 240
                                                                        
Sbjct: 181  YSSNXSLESSEPTTAAFTATNRSRTTSHGTPFAFRNNQRGRSHSHNNNSSNRGRTYSGHG 240

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 241  RRPPRCQICRIEGHYADRCNQRYARTDSSAHLAEAFNTSCSLSGPEAADWFLDTGASAHM 300

Query: 301  ------------------------------------------------------------ 360
                                                                        
Sbjct: 301  TTDPSXLDQSKNYMGKDSVIVGNGASLPITHTGTLSPVPNIHLLDVLVVXHLTKNLLSIS 360

Query: 361  ------------------------------------------------------------ 420
                                                                        
Sbjct: 361  KLTSDFPLSVTFTNNLFTVQNRQTGRXVATGKRDGGLYVLERGNSAFISVLKNKSLRASY 420

Query: 421  ------------------------------------------------------------ 480
                                                                        
Sbjct: 421  DLWHARLGHLSLTSLLPSPSLCSTCQLAKNHRLPYSRNEHRSSHVLDLIHCDLWGPSPIK 480

Query: 481  ------------------------------------------------------------ 540
                                                                        
Sbjct: 481  SNSGFLYYVIFIDDYSRFTWLYPLKFKSDFFDIFLQFQKFVENQHSARIKVFQSDGGAEF 540

Query: 541  -----------------------------------------------------------C 600
                                                                        
Sbjct: 541  TNTCFKAHLRTSGIHHQLSCPYTPAQNGRAERKHRHVTETGLALLFHSHLSPRFWVDAFS 600

Query: 601  TAAYIINRLPTPLLGGKSPFELLYGYTPHYDNFHPFGCRVYPYLRDYMPNKLSPRSIPCI 660
            TA YIINRLPTPLLGGKSPFELLYG +PHY+NFHPFGCRVYP LRDYMPNKLSPRSIPCI
Sbjct: 601  TATYIINRLPTPLLGGKSPFELLYGXSPHYENFHPFGCRVYPCLRDYMPNKLSPRSIPCI 660

Query: 661  FLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIPISNFLEPHLHH 720
            FLGYSP HKGFRCLDP T++LYIT HAQFDETHFP +PSSQAQPLS++ ISNFLEP LHH
Sbjct: 661  FLGYSPSHKGFRCLDPTTSRLYITRHAQFDETHFPTVPSSQAQPLSSLHISNFLEPRLHH 720

Query: 721  IDSSPPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLSPSTSNSTSIEPPVD 780
            ID SPP+  SP  HIP+S+SSPC+ICSDLVDESVQVDTSLAGS+L P  S+  SIE   D
Sbjct: 721  IDPSPPSPPSPSSHIPRSNSSPCNICSDLVDESVQVDTSLAGSSLPPLASSPHSIEHAAD 780

Query: 781  -FSSLSTHPMITRAKAGIFKTRHPANLGMLGSSGLLSALLASTEPKGFKSAAKNPAWVAA 813
              SSL +HPMITRAKAGIFKTRHPANLG+LGSSGLL ALLASTEPKGFKSAAKNPAW+AA
Sbjct: 781  SSSSLGSHPMITRAKAGIFKTRHPANLGVLGSSGLLXALLASTEPKGFKSAAKNPAWLAA 840

[Close]

BLAST of CmaCh01G011090 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 377.9 bits (969), Expect = 2.1e-104
Identity = 204/447 (45.64%), Postives = 277/447 (61.97%), Query Frame = 0


Query: 380 LSALLASTEPKGFKSAAKNPAWVAAMDEEIRALQQNDTWTLVPRPANTNIVGSKWVFRIK 439
           L  +  + EP  +  A +   W  AMD+EI A++   TW +   P N   +G KWV++IK
Sbjct: 77  LVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIK 136

Query: 440 YLPDGSVERFKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVK 499
           Y  DG++ER+KARLVAKGYTQ  G+D+ +TFSPV K T+V+++L+I+    + L QLD+ 
Sbjct: 137 YNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDIS 196

Query: 500 NAFLNGTLIERVHMEQPPGYV----DPRFPKHVCLLKKALYGLKQAPRAWFQRFSSFLLT 559
           NAFLNG L E ++M+ PPGY     D   P  VC LKK++YGLKQA R WF +FS  L+ 
Sbjct: 197 NAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIG 256

Query: 560 LGFSCSRADTSLFVFHQQSNLIYLLLYVDDIIVTGNNSSLINSFTRKLHSEFATKDLGSL 619
            GF  S +D + F+    +  + +L+YVDDII+  NN + ++    +L S F  +DLG L
Sbjct: 257 FGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPL 316

Query: 620 SYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTA-DGSPFSDPT 679
            YFLGLE + +  G+ I Q KYA D+L    LL  KP   PM  S   +A  G  F D  
Sbjct: 317 KYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAK 376

Query: 680 LYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLIFRP 739
            YR L+G L YL ITR DI++AVN +SQF  AP   H  AV +IL Y+KGT+  GL F  
Sbjct: 377 AYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGL-FYS 436

Query: 740 STVPSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLISWSAKKQPTVSRSSCESEYRALA 799
           S     L  +SDA +  C DTRRST+GY ++LG +LISW +KKQ  VS+SS E+EYRAL+
Sbjct: 437 SQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALS 496

Query: 800 TTAAELLWVTHLLHDLK--ISKILLLF 820
               E++W+     +L+  +SK  LLF
Sbjct: 497 FATDEMMWLAQFFRELQLPLSKPTLLF 522

[Close]

BLAST of CmaCh01G011090 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 248.8 bits (634), Expect = 1.5e-65
Identity = 123/226 (54.42%), Postives = 165/226 (73.01%), Query Frame = 0


Query: 577 IYLLLYVDDIIVTGNNSSLINSFTRKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLK 636
           +YLLLYVDDI++TG++++L+N    +L S F+ KDLG + YFLG++    P GLF+SQ K
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 637 YARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYA 696
           YA  IL  A +LD KP+ TP+ +  + +   + + DP+ +RS+VGALQYLT+TRPDI+YA
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 120

Query: 697 VNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLIFRPSTVPSTLVAYSDADWAGCPDTR 756
           VN V Q +H PT   F  +KR+LRYVKGT+  GL    ++    + A+ D+DWAGC  TR
Sbjct: 121 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNS-KLNVQAFCDSDWAGCTSTR 180

Query: 757 RSTSGYSIYLGNNLISWSAKKQPTVSRSSCESEYRALATTAAELLW 803
           RST+G+  +LG N+ISWSAK+QPTVSRSS E+EYRALA TAAEL W
Sbjct: 181 RSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of CmaCh01G011090 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 118.2 bits (295), Expect = 3.1e-26
Identity = 60/133 (45.11%), Postives = 82/133 (61.65%), Query Frame = 0


Query: 354 MITRAKAGIFKTRHPANLGMLGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIRALQ 413
           M+TR+KAGI K     +L +              EPK    A K+P W  AM EE+ AL 
Sbjct: 1   MLTRSKAGINKLNPKYSLTI--------TTTIKKEPKSVIFALKDPGWCQAMQEELDALS 60

Query: 414 QNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARLVAKGYTQVPGLDYTDTFSPV 473
           +N TW LVP P N NI+G KWVF+ K   DG+++R KARLVAKG+ Q  G+ + +T+SPV
Sbjct: 61  RNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPV 120

Query: 474 VKATTVRVVLSIA 487
           V+  T+R +L++A
Sbjct: 121 VRTATIRTILNVA 125

[Close]

BLAST of CmaCh01G011090 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 82.0 bits (201), Expect = 2.4e-15
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 685 YLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLIFRPSTVPSTLVAY 744
           YLTITRPD+ +AVN +SQF  A       AV ++L YVKGT+  GL F  +T    L A+
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGL-FYSATSDLQLKAF 61

Query: 745 SDADWAGCPDTRRSTSGY 763
           +D+DWA CPDTRRS +G+
Sbjct: 62  ADSDWASCPDTRRSVTGF 78

[Close]

BLAST of CmaCh01G011090 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-12
Identity = 47/159 (29.56%), Postives = 77/159 (48.43%), Query Frame = 0


Query: 19  ITIKLSSSNYLLWKSQLLPLLESQDMLGYVDGTMVPPPRFEPETSSTFNPKYLAWRAADQ 78
           + + +  SNY  W+   L    S D++G++DGT++P            N   + W+  D 
Sbjct: 22  VMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTLLPT-----------NANDVNWQKRDG 81

Query: 79  RLLCLLLSSLT-EEAMAVVVGLSTARDVWLALETTYSHQSKARELRLKDDLQLMKRGTKP 138
            +   L  +LT ++     V  ST+RD+WL ++  + +   AR LRL  +L+    G   
Sbjct: 82  IVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMR 141

Query: 139 VAEYARAFKKICDQLHAIGRPVEDIDKVHCTAAYIINRL 177
           VA+Y R  KK+ D L  +  PV D + V     Y++N L
Sbjct: 142 VADYYRKMKKLADSLRNVDVPVTDRNLV----MYVLNGL 165

The following BLAST results are available for this feature:

BLAST of CmaCh01G011090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	8.4e-154	42.84	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.8e-149	42.47	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	6.1e-88	33.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.7e-80	29.65	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92519	2.1e-64	54.42	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CmaCh01G011090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438E763	0.0e+00	64.61	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438E275	0.0e+00	64.86	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A2N9I601	0.0e+00	63.20	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49318 PE=4 SV=1	[more]
A0A438EBA0	0.0e+00	55.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438IHQ8	0.0e+00	67.03	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]

BLAST of CmaCh01G011090 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW43615.1	0.0e+00	64.61	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW41798.1	0.0e+00	64.86	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW45095.1	0.0e+00	55.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW96109.1	0.0e+00	67.03	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
CAN78022.1	0.0e+00	53.61	hypothetical protein VITISV_015518 [Vitis vinifera]	[more]

BLAST of CmaCh01G011090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.1e-104	45.64	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.5e-65	54.42	DNA/RNA polymerases superfamily protein	[more]
ATMG00820.1	3.1e-26	45.11	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00240.1	2.4e-15	52.56	Gag-Pol-related retrotransposon family protein	[more]
AT1G34070.1	1.5e-12	29.56	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 415..657 e-value: 5.5E-68 score: 229.2
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 73..166 e-value: 1.9E-13 score: 50.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 325..345
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 383..759 coord: 165..263
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 742..815 e-value: 1.28991E-38 score: 138.37
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 415..812

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G011090.1	CmaCh01G011090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004672	protein kinase activity