CmaCh01G009500 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G009500
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	proline-rich proteoglycan 2-like
Location	Cma_Chr01: 6048997 .. 6049433 (+)
RNA-Seq Expression	CmaCh01G009500
Synteny	CmaCh01G009500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCAATACTAAGAGATGACATTACCAAGCTTGGTTTGGGTTCCAATAGACTTGTTCCAGAGGGTCCAAATCAGATGTTCCCTCCTGAAATTCCTCTACACAACCTTGGTTCCAAGAGACTTGTTCCGGGTGGGCCAAATCAGATGTTCCCTCCTGAAACTCCTCCGCACAACCTTGGTTCCAAGAGACTTGTTCCGGGTGGGCCAAATCAGATGTTCCCTCCTGAAACTCCTCTACACAACCTTGGTTCCAAGAGACTTGTTCCGGGTGGGCCAAATCAGATGTTCCCTCCTGAAACTCCTCCACACAACCTTGGTTCCAAGAGACTTGTTCCGGGTGGGCCAAATCAGATGTTCCCTCCTGAAACTCCTCTACACAACCTTGGTTCTAAGAGACTTGTTCCGGGTGGGCCAAATCAGATGTTCCCTCCTGA

mRNA sequence

ATGAAGTCAATACTAAGAGATGACATTACCAAGCTTGGTTTGGGTTCCAATAGACTTGTTCCAGAGGGTCCAAATCAGATGTTCCCTCCTGAAATTCCTCTACACAACCTTGGTTCCAAGAGACTTGTTCCGGGTGGGCCAAATCAGATGTTCCCTCCTGAAACTCCTCCGCACAACCTTGGTTCCAAGAGACTTGTTCCGGGTGGGCCAAATCAGATGTTCCCTCCTGAAACTCCTCTACACAACCTTGGTTCCAAGAGACTTGTTCCGGGTGGGCCAAATCAGATGTTCCCTCCTGAAACTCCTCCACACAACCTTGGTTCCAAGAGACTTGTTCCGGATGTTCCCTCCTGA

Coding sequence (CDS)

ATGAAGTCAATACTAAGAGATGACATTACCAAGCTTGGTTTGGGTTCCAATAGACTTGTTCCAGAGGGTCCAAATCAGATGTTCCCTCCTGAAATTCCTCTACACAACCTTGGTTCCAAGAGACTTGTTCCGGGTGGGCCAAATCAGATGTTCCCTCCTGAAACTCCTCCGCACAACCTTGGTTCCAAGAGACTTGTTCCGGGTGGGCCAAATCAGATGTTCCCTCCTGAAACTCCTCTACACAACCTTGGTTCCAAGAGACTTGTTCCGGGTGGGCCAAATCAGATGTTCCCTCCTGAAACTCCTCCACACAACCTTGGTTCCAAGAGACTTGTTCCGGATGTTCCCTCCTGA

Protein sequence

MKSILRDDITKLGLGSNRLVPEGPNQMFPPEIPLHNLGSKRLVPGGPNQMFPPETPPHNLGSKRLVPGGPNQMFPPETPLHNLGSKRLVPGGPNQMFPPETPPHNLGSKRLVPDVPS

Homology

[Close]

BLAST of CmaCh01G009500 vs. ExPASy TrEMBL
Match: A0A6J1F0K6 (uncharacterized protein LOC111438388 OS=Cucurbita moschata OX=3662 GN=LOC111438388 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.8e-52
Identity = 102/117 (87.18%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MKSILRDDITKLGLGSNRLVPEGPNQMFPPEIPLHNLGSKRLVPGGPNQMFPPETPPHNL 60
           MKSI+RD ITKLGLGS R V  GPNQMFPPE PLHNLGSKRLVPGGPNQMFPP TP HNL
Sbjct: 1   MKSIVRDVITKLGLGSKRFVSGGPNQMFPPETPLHNLGSKRLVPGGPNQMFPPRTPLHNL 60

Query: 61  GSKRLVPGGPNQMFPPETPLHNLGSKRLVPGGPNQMFPPETPPHNLGSKRLVPDVPS 118
           GSKRLVP GPNQMFPPETPLHNLGSKRLVP GPNQMFPPETP HNLGSKRLVP  P+
Sbjct: 61  GSKRLVPDGPNQMFPPETPLHNLGSKRLVPDGPNQMFPPETPLHNLGSKRLVPGGPN 117

[Close]

BLAST of CmaCh01G009500 vs. ExPASy TrEMBL
Match: A0A6J1EWC0 (proline-rich proteoglycan 2-like OS=Cucurbita moschata OX=3662 GN=LOC111436722 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.6e-19
Identity = 55/110 (50.00%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 8   DITKLGLGSNRLVPEGPNQMFPPEIPLHNLGSKRLVPGGPNQMFPPETPPHNLGSKRLVP 67
           +I  LGL + R VP  PN    PE P  NLG+KR VP GPN+   P+TPP  LG+KR V 
Sbjct: 49  EIPPLGLRAKRHVPTSPNPKTSPESPRLNLGTKRRVPTGPNRATSPKTPPLGLGTKRCVS 108

Query: 68  GGPNQMFPPETPLHNLGSKRLVPGGPNQMFPPETPPHNLGSKRLVPDVPS 118
            GPN    P++P  +LG+KR VP GPN     E+PP NL +KR VP  P+
Sbjct: 109 TGPNPATSPQSPPSSLGTKRRVPKGPNPATSSESPPLNLVTKRRVPTRPN 158

[Close]

BLAST of CmaCh01G009500 vs. ExPASy TrEMBL
Match: M4D9I0 (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.7e-19
Identity = 59/115 (51.30%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 15  GSNRLVPEGPNQMFPPEIPLH---NLGSKRLVPGGPNQMFPPETPPHNL---GSKRLVPG 74
           G  RLVP GPN    P  P H   N G KRLVP GPN    P +PPH++   G KRLVP 
Sbjct: 117 GVKRLVPSGPNNETSPPSPPHSIANFGVKRLVPSGPNNETSPPSPPHSIADFGVKRLVPS 176

Query: 75  GPNQMFPPETPLH---NLGSKRLVPGGPNQMFPPETPPH---NLGSKRLVPDVPS 118
           GPN    P +P H   N G KRLVP GPN    P +PPH   N G KRLVP  P+
Sbjct: 177 GPNNETSPPSPPHSIANFGVKRLVPSGPNNETSPPSPPHSIANFGVKRLVPSGPN 231

[Close]

BLAST of CmaCh01G009500 vs. ExPASy TrEMBL
Match: A0A438IDU1 (Zinc finger protein 39 OS=Vitis vinifera OX=29760 GN=Zfp39 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 9.7e-19
Identity = 62/128 (48.44%), Postives = 72/128 (56.25%), Query Frame = 0


Query: 10  TKLGLGSNRLVPEGPNQMFPPEIP-----LHNLGSKRLVPGGPNQMFPPETP-----PHN 69
           TK   G  RLVP GPN + PPE P       + G KRLVP GPN + PPETP       +
Sbjct: 83  TKTQFGMKRLVPSGPNPVEPPETPSTSFTKTHFGVKRLVPSGPNPVEPPETPSTSFTKTH 142

Query: 70  LGSKRLVPGGPNQMFPPETPLHN-----LGSKRLVPGGPNQMFPPETP-----PHNLGSK 118
            G KRLVP GPN + PPETP  +      G KRLVP GP+ + PPETP       + G K
Sbjct: 143 FGVKRLVPSGPNPVEPPETPSTSFTKTYFGVKRLVPSGPDPVEPPETPSTSFTKTHFGVK 202

[Close]

BLAST of CmaCh01G009500 vs. ExPASy TrEMBL
Match: A0A398AAA3 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRARA_C04081 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.3e-18
Identity = 58/115 (50.43%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 15  GSNRLVPEGPNQMFPPEIPLH---NLGSKRLVPGGPNQMFPPETPPHNL---GSKRLVPG 74
           G  RLVP GPN    P  P H   N G KRLVP GPN    P +PPH++   G KRLVP 
Sbjct: 270 GVKRLVPSGPNNETSPPSPPHFIANFGVKRLVPSGPNNETSPPSPPHSIADFGVKRLVPS 329

Query: 75  GPNQMFPPETPLHNL---GSKRLVPGGPNQMFPPETPPH---NLGSKRLVPDVPS 118
           GPN    P +P H++   G KRLVP GPN    P +PPH   N G KRLVP  P+
Sbjct: 330 GPNNETSPPSPPHSIADFGVKRLVPSGPNNETSPPSPPHSIANFGVKRLVPSGPN 384

[Close]

BLAST of CmaCh01G009500 vs. NCBI nr
Match: XP_022932063.1 (uncharacterized protein LOC111438388 [Cucurbita moschata])

HSP 1 Score: 214.9 bits (546), Expect = 3.6e-52
Identity = 102/117 (87.18%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MKSILRDDITKLGLGSNRLVPEGPNQMFPPEIPLHNLGSKRLVPGGPNQMFPPETPPHNL 60
           MKSI+RD ITKLGLGS R V  GPNQMFPPE PLHNLGSKRLVPGGPNQMFPP TP HNL
Sbjct: 1   MKSIVRDVITKLGLGSKRFVSGGPNQMFPPETPLHNLGSKRLVPGGPNQMFPPRTPLHNL 60

Query: 61  GSKRLVPGGPNQMFPPETPLHNLGSKRLVPGGPNQMFPPETPPHNLGSKRLVPDVPS 118
           GSKRLVP GPNQMFPPETPLHNLGSKRLVP GPNQMFPPETP HNLGSKRLVP  P+
Sbjct: 61  GSKRLVPDGPNQMFPPETPLHNLGSKRLVPDGPNQMFPPETPLHNLGSKRLVPGGPN 117

[Close]

BLAST of CmaCh01G009500 vs. NCBI nr
Match: XP_022930205.1 (proline-rich proteoglycan 2-like [Cucurbita moschata])

HSP 1 Score: 104.8 bits (260), Expect = 5.3e-19
Identity = 55/110 (50.00%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 8   DITKLGLGSNRLVPEGPNQMFPPEIPLHNLGSKRLVPGGPNQMFPPETPPHNLGSKRLVP 67
           +I  LGL + R VP  PN    PE P  NLG+KR VP GPN+   P+TPP  LG+KR V 
Sbjct: 49  EIPPLGLRAKRHVPTSPNPKTSPESPRLNLGTKRRVPTGPNRATSPKTPPLGLGTKRCVS 108

Query: 68  GGPNQMFPPETPLHNLGSKRLVPGGPNQMFPPETPPHNLGSKRLVPDVPS 118
            GPN    P++P  +LG+KR VP GPN     E+PP NL +KR VP  P+
Sbjct: 109 TGPNPATSPQSPPSSLGTKRRVPKGPNPATSSESPPLNLVTKRRVPTRPN 158

[Close]

BLAST of CmaCh01G009500 vs. NCBI nr
Match: XP_009136047.2 (proline-rich receptor-like protein kinase PERK10 [Brassica rapa])

HSP 1 Score: 104.8 bits (260), Expect = 5.3e-19
Identity = 58/117 (49.57%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 13  GLGSNRLVPEGPNQMFPPEIPLHNL---GSKRLVPGGPNQMFPPETPPHNL---GSKRLV 72
           G G  RLVP GPN    P  P H++   G KRLVP GPN    P +PPH++   G KRLV
Sbjct: 180 GFGVKRLVPSGPNNETSPPSPPHSIVDFGVKRLVPSGPNNETSPPSPPHSIADFGVKRLV 239

Query: 73  PGGPNQMFPPETPLHNL---GSKRLVPGGPNQMFPPETPPH---NLGSKRLVPDVPS 118
           P GPN    P +PLH++   G  RLVP GPN    P +PPH   N G KRLVP  P+
Sbjct: 240 PSGPNNETSPPSPLHSIADFGVNRLVPSGPNNETSPPSPPHSIANFGVKRLVPSKPN 296

[Close]

BLAST of CmaCh01G009500 vs. NCBI nr
Match: XP_010645829.1 (PREDICTED: proline-rich proteoglycan 2-like [Vitis vinifera])

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-18
Identity = 62/128 (48.44%), Postives = 72/128 (56.25%), Query Frame = 0


Query: 10  TKLGLGSNRLVPEGPNQMFPPEIP-----LHNLGSKRLVPGGPNQMFPPETP-----PHN 69
           TK   G  RLVP GPN + PPE P       + G KRLVP GPN + PPETP       +
Sbjct: 76  TKTQFGMKRLVPSGPNPVEPPETPSTSFTKTHFGVKRLVPSGPNPVEPPETPSTSFTKTH 135

Query: 70  LGSKRLVPGGPNQMFPPETPLHN-----LGSKRLVPGGPNQMFPPETP-----PHNLGSK 118
            G KRLVP GPN + PPETP  +      G KRLVP GP+ + PPETP       + G K
Sbjct: 136 FGVKRLVPSGPNPVEPPETPSTSFTKTYFGVKRLVPSGPDPVEPPETPSTSFTKTHFGVK 195

[Close]

BLAST of CmaCh01G009500 vs. NCBI nr
Match: RVW94906.1 (Zinc finger protein 39 [Vitis vinifera])

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-18
Identity = 62/128 (48.44%), Postives = 72/128 (56.25%), Query Frame = 0


Query: 10  TKLGLGSNRLVPEGPNQMFPPEIP-----LHNLGSKRLVPGGPNQMFPPETP-----PHN 69
           TK   G  RLVP GPN + PPE P       + G KRLVP GPN + PPETP       +
Sbjct: 83  TKTQFGMKRLVPSGPNPVEPPETPSTSFTKTHFGVKRLVPSGPNPVEPPETPSTSFTKTH 142

Query: 70  LGSKRLVPGGPNQMFPPETPLHN-----LGSKRLVPGGPNQMFPPETP-----PHNLGSK 118
            G KRLVP GPN + PPETP  +      G KRLVP GP+ + PPETP       + G K
Sbjct: 143 FGVKRLVPSGPNPVEPPETPSTSFTKTYFGVKRLVPSGPDPVEPPETPSTSFTKTHFGVK 202

The following BLAST results are available for this feature:

BLAST of CmaCh01G009500 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh01G009500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0K6	1.8e-52	87.18	uncharacterized protein LOC111438388 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]
A0A6J1EWC0	2.6e-19	50.00	proline-rich proteoglycan 2-like OS=Cucurbita moschata OX=3662 GN=LOC111436722 P...	[more]
M4D9I0	5.7e-19	51.30	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1	[more]
A0A438IDU1	9.7e-19	48.44	Zinc finger protein 39 OS=Vitis vinifera OX=29760 GN=Zfp39 PE=4 SV=1	[more]
A0A398AAA3	1.3e-18	50.43	Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRARA_C04081 PE=4 SV=1	[more]

BLAST of CmaCh01G009500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932063.1	3.6e-52	87.18	uncharacterized protein LOC111438388 [Cucurbita moschata]	[more]
XP_022930205.1	5.3e-19	50.00	proline-rich proteoglycan 2-like [Cucurbita moschata]	[more]
XP_009136047.2	5.3e-19	49.57	proline-rich receptor-like protein kinase PERK10 [Brassica rapa]	[more]
XP_010645829.1	2.0e-18	48.44	PREDICTED: proline-rich proteoglycan 2-like [Vitis vinifera]	[more]
RVW94906.1	2.0e-18	48.44	Zinc finger protein 39 [Vitis vinifera]	[more]

BLAST of CmaCh01G009500 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G009500.1	CmaCh01G009500.1	mRNA